BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34000.1

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482347 jgi|Araly1|482347|fgenesh2_kg.4__1407__AT2G34000.1         684    0.0  


> Ahg482347 jgi|Araly1|482347|fgenesh2_kg.4__1407__AT2G34000.1
Length=429

 Score =  684 bits (370),  Expect = 0.0
 Identities = 410/429 (96%), Gaps = 3/429 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTTCAATGATCCTTCATTAAACACAATCATCCTTTGGTTCGCCTCCGTAACGTCT  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTTTCAATGATCCTTCATTAAACTCAATCATCCTTTGGTTCGCCTCCGTAACGTCT  60

Query  61   CTCGTGACTATCTCAGTCATCTTCGCCCTTCTCATTATTTGTTTACTCAAACGCCGTAGG  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTGGTGACTATCTCAGTCATCTTCGCCCTTCTCATTATTTGTTTACTCAAACGCCGTAGG  120

Query  121  TTTGATGTATCACCGGAAACCGAGAACGAGAACCAAGGAAGAAGAGAGCCACGGTGCCAA  180
            |||||||||||||| ||||||||||| ||| |||  |||||||||||||||| |||||||
Sbjct  121  TTTGATGTATCACCAGAAACCGAGAATGAGCACCGCGGAAGAAGAGAGCCACCGTGCCAA  180

Query  181  GGGCTTAGCGCTTCCGTGATTGCTGCCTTTCCCACCTTTTCTTACAAACCGGATAATAAT  240
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct  181  GGGCTTAGCGCTTCCGTGATTGCCGCCTTTCCCACTTTTTCTTACAAACCGGATAATAAC  240

Query  241  GATCCTGAGAGCAACAATCAGGAGATCGAGTGTCCGGTTTGCTTAGGATTAATCCCCAAG  300
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  GATCCCGAGAGCAACAATCAGGAGATCGAGTGTCCGGTTTGCTTAGGGTTAATCCCCAAG  300

Query  301  AATGTTGTAATTAAGGTTTTACCAAATTGTATGCACATGTTTGATGAGGAATGTATCGGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AATGTTGTAATTAAGGTTTTACCAAATTGTATGCACATGTTTGATGAGGAATGTATCGGT  360

Query  361  AAGTGGCTTGAATCACACGCAACTTGTCCTGTGTGTCGTAGA-TTGGCTGAGCCAATGAC  419
            |||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||| |
Sbjct  361  AAGTGGCTTGAATCACACGCAACTTGTCCTGTGTGTCGTAGACTTGT-TGAGCCGATGGC  419

Query  420  TA-GCAATG  427
            || ||||||
Sbjct  420  TAAGCAATG  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16483214448


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5