BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34010.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933996 jgi|Araly1|933996|scaffold_401984.1 1264 0.0
Ahg473105 jgi|Araly1|473105|fgenesh2_kg.1__3059__AT1G29010.1 71.3 2e-11
> Ahg933996 jgi|Araly1|933996|scaffold_401984.1
Length=933
Score = 1264 bits (684), Expect = 0.0
Identities = 851/927 (92%), Gaps = 30/927 (3%)
Strand=Plus/Plus
Query 3 ACTTGAGAACAATGTGTAGTAACAACAACACAAGTAGTGGAAGCTATGGAGAGTTACAGT 62
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 18 ACTTGAGAACAATGTGTAGTAACAACAACACAAGTAGTGGAAGCTATGGAGACTTACAGT 77
Query 63 TACATGATGAGTCCTCTGGTTCTTGTCGGAAGAAACAGAAGAAAGACAAAGTACGACGAA 122
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TACATGATGAGTACTCTGGTTCTTGTCGGAAGAAACAGAAGAAAGACAAAGTACGACGAA 137
Query 123 GAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTTCAAGAAGAGTACAAACCTCCAC 182
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 138 GAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTTCAAGACGAGTACAAATCTCCAC 197
Query 183 TTTCTTCGTCTCCTTCATTACCAAACATTGATCATCATCATCACACTCTCTTTGCTCCGG 242
||||| | || | ||||||||||||| ||||| |||||| || ||||||||||||||
Sbjct 198 TTTCT-C--CT--T-CATTACCAAACATAGATCACCATCAT-AC--TCTCTTTGCTCCGG 248
Query 243 CTAGTAGCGTCTATGATTTAGTGATGACTTC-TCCAAACTTTTCTTTCCCCGAGAAACTT 301
||||||||| |||||||||||||| || ||| |||||||||||||||||| ||||| |||
Sbjct 249 CTAGTAGCGGCTATGATTTAGTGACGA-TTCCTCCAAACTTTTCTTTCCCGGAGAACCTT 307
Query 302 GCGTCAACGTTACCGGTTTTCCCG-ATTTCGTACGGATCTTTGATTCCTCCGGCGCCGAT 360
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 308 CCGTC---GTTACCGGTTTTCCCGCATT-CGTACGGATCTTTGATTCCTCCGGCGCCGGT 363
Query 361 TTTTCAGAGGAGCCAACATTCTCTAATGATGAATCTACCGAATCCATCTCCAGGAGCAGG 420
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 364 TTTTCAGAGGAACCAACATTCTCTAATGATGAATCTACCAAATCCATCTCCAGGAACAGG 423
Query 421 AAGATTTTATCAATTCATAGAGCCCCCTTCAAACCAAAGATCTTGCGTCGATTCTGTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 424 AAGATTTTATCAATTCATAGAGCCCCCTTCAAACCAAAGATCTTGCGTCGATTCTGTCTC 483
Query 481 TCAGTTTCTTGAAGAAGAAAATAAAAAGATATTCACTGCTAAGAAGAGGCCATGGCCTTT 540
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct 484 TCAGTTTCTTGAGGAAGAAAATAAAAAGATGGTCACTGCGAAGAAGAGGCCATGGCATTT 543
Query 541 TCTCACTGACACCACGAAACCTAGTGTTGGACCAACCACAAC-ATCAACAATCATAAGGC 599
|||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct 544 TCTCACAGACACCACGAAACCTAGCGTTGGACCAACCACAACTA-CAAGAATCATAAGG- 601
Query 600 CGGATGCGACACAAAACCGGTCAATGGGTATAACTCCGGTTCAAGAGACCGGTACAACAA 659
| |||| | ||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 602 -G-ATGCAATACAAAACCGGTCAATGGATGTAAGTCCGGTTCAAGAGACCGGTACAACAA 659
Query 660 CTAGCAACCCCATCGCCATTGATTCACCTACGTCCATTCCACGTCATTACCCGAGGTTTA 719
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TTAGCAATCCCATCGCCATTGATTCGCCTACGTCCATTCCACGTCATTACCCGAGGTTTA 719
Query 720 TCCCGCTTGGTTTACAGTATGAACAACAACAACAAAAACTAAAAGACTTGGATGAGACTA 779
|||||||||| ||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 720 TCCCGCTTGGCTTACAGTATGAACAACAACCACAAAAA-TA-----CTTGGATGAGAATA 773
Query 780 TGCAATGGAGAAGTAAGAAGCCTTTCTACAGCTTTATACCCTCTGGTGATCCGAGCAATG 839
|||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 774 TGCAATGGAGAAGTAAAAAGCCGTTCTATAGCTTCATACCCTCTGGTGATCCCAGCAATG 833
Query 840 ATGACCAAGAACAACGACCATGTGACCTATTTGGATCAGCTGCTG---ATCATGGAATTG 896
|||||| |||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 834 ATGACCGAGAACAACGACCATGTGACCGATATGAATCAGCTGCTGCTGATCATGGAATTG 893
Query 897 ATCTCAACCTTAAGTTATAGGGATTTT 923
|||||| ||||||||||||| ||||||
Sbjct 894 ATCTCAGCCTTAAGTTATAGAGATTTT 920
> Ahg473105 jgi|Araly1|473105|fgenesh2_kg.1__3059__AT1G29010.1
Length=1010
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 122 AGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 159
||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5