BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34020.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1 2979 0.0
Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958 473 2e-132
> Ahg482349 jgi|Araly1|482349|fgenesh2_kg.4__1409__AT2G34020.1
Length=2000
Score = 2979 bits (1613), Expect = 0.0
Identities = 1801/1892 (95%), Gaps = 11/1892 (1%)
Strand=Plus/Plus
Query 133 TTCACAATAAAGCAGCTCACATGCAAACATTCTCGTTTAAGAGGAGACCCAACCATTCAC 192
||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 79 TTC-CACTAAAGCAGCTCACATGCAAACATTCTCGTTTAAGAGGCGACCCAACCATTCAC 137
Query 193 ATTTCCCATCAActctcttcttcttctttctctctttaactctgttcatctctGGTGTGA 252
||||||||| |||||||||||| |||||||| |||||| ||||||||||||||| |||||
Sbjct 138 ATTTCCCATTAACTCTCTTCTTTTTCTTTCTATCTTTAGCTCTGTTCATCTCTGCTGTGA 197
Query 253 GTTCTCGTGTACTAAGTCCTGTCCCTCTAG-ATAACTCGAGCTTGATCTCTGATGGTGTC 311
| |||||||| |||||||| || ||||| | ||||||||| |||||||||||||||||||
Sbjct 198 GCTCTCGTGTCCTAAGTCCCGTACCTCT-GAATAACTCGATCTTGATCTCTGATGGTGTC 256
Query 312 CATGGCGCCTCGGATTACAAGTATCTCACTCTCGACCCTCCAAAGAACGTTTCCAAAGCA 371
|||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 257 CATGGCGCCTTGGATTACAAGTATCTCACTCTCGATCCTCCAGAGAACGTCAAAAAAGCA 316
Query 372 GCTTGCATCCATGTCTACGGGTTCCTTCCATGTGCAGACAATATTGGAGGTTATGTCTTC 431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GCTTGCATTCATGTCTACGGGTTCCTTCCATGTGCAGACAATATTGGAGGTTATGTCTTC 376
Query 432 CAAGTTTTTTCCTTTGGCTGTCTCTTGATCATTGGTGACTATTTCTTGTCTCAAGGAAGA 491
|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 377 CAAGTTTTCTCCTTTGGCTGTCTTTTGATCATTGGTGACTATTTCTTGTCTGAAGGAAGA 436
Query 492 TCCAAACTCTTTGTAATCTTCGAGGTCGGGTTTTATGGTGGTATCGTCTTCCCTCTCCTT 551
|| ||||||||| |||| |||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 437 TCAAAACTCTTTCTAATATTCGAGGTCGGGTTCTATGGCGGTATCATCTTCCCTCTCCTT 496
Query 552 ACCATGTTCCCAAGAATTGCCCTTATGATATCGCCTGGACTAGCAGCGACCCACGAGGGT 611
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 497 ACAATGTTCCCAAGAATTGCCCTTATGATATCGCCTGGACTAGTAGCGACCCACGAGGGT 556
Query 612 GCT-TTAATGATTGTTGGAAACAACGTTGGAGTTACTATTGGACACACAATCTTTGCTCT 670
||| || ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 557 GCTCTT-ATGATTGCGGGAAACAACGTTGGAGTTACTATGGGACACACAATTTTTGCTCT 615
Query 671 GACAATGCAATGGGGAGCTTGTGTTATCTTTGGTTTGACTAGTCCTAATTCAGATCCATC 730
||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 616 GACAATGCATTGGGGAGCTTGTGTTGTCTTTGGTTTGACCGGTCCTAATTCAGATCCATC 675
Query 731 AATCCGAAGAGGATCTATCAAAAGAACATCCTCTGACACAAAGAATCCAAGAAGAGGATT 790
||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 676 AATCCGAAGAGGATCCATCAAAAGAACAGCCTCTGATACAAAGAATCCAAGAAGGGGATT 735
Query 791 TTACAGGATGAAGATACTAAAAAGTGTTGTTGAAGCAAGCGTAGATGCGGATCCTAAGAA 850
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 736 TTAAAGGATGAAGATACTAAAAAGTGTTGTTGAAGCAAGCTTAGATGCGGATCCTAAGAA 795
Query 851 CAAAAAAGCTGCAGGGATTATGCTCTTGACTCTAGTTCCATTTCTCTTAGTGACATTGCC 910
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CAAGAAAGCTGCAGGGATTATGCTCTTGACTCTAGTTCCATTTCTCTTAGTGACATTGCC 855
Query 911 TGATTTATTGGATGTACAATCTTGGAGTGATATCATTATGTTGATCACACTCATAATCTC 970
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TGATTTATTGGATGCACAATCTTGGAGTGATATCATTATGTTGATCACACTCATAATCTC 915
Query 971 CTGTTCTTCAACCTTTATCTACTTTGTTTACTCGTATTTTGATACGGCAGACCAAAAGAA 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TTGTTCTTCAACCTTTATCTACTTTGTTTACTCGTATTTTGATACGGCAGACCAAAAGAA 975
Query 1031 GAGCTTAGATCATGCCAAGTTTGAGCTTATGTCAGAAGTTCATAAGCATTTGCAGAGTTT 1090
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 976 GAGCTTAGATCACGCCAAGTTTGAGCTCATGTCAGAAGTTCATAAGCATTTGCAGAGTTT 1035
Query 1091 TTCGCCTCGAACCCTTATTAGAGATGGACAACTAAGTAAAGAAAGCTTGAAAAGTTTGTT 1150
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 TTCGCCTCGAACCCTTATTAGAGACGGACAACTAAGTAAAGAAAGCTTGAAAAGTTTGTT 1095
Query 1151 TGATAAAATCGATAGGAACAAAGATGGGAAGATTCAAATCTCGGAGCTTAAAGACTTAAC 1210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CGATAAAATCGATAGGAACAAAGATGGGAAGATTCAAATCTCGGAGCTTAAAGACTTAAC 1155
Query 1211 CGTGGAGTTTGGAGTTTTTGGAAAGATGAAATGTGACATCAATGAGTTTGCTAGCACTTT 1270
|| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1156 AGTAGAGTTTGGAGTTTTTGGAAGGATGAAATGTGACATCAATGAGTTTGCAAGCACTTT 1215
Query 1271 ACTTGCGGAGTTCGATAAAGACAAAAATGGCGAACTAGACGAGAACGAATTCGAAGAAGG 1330
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ACTTGCGGAGTTCGACAAAGACAAAAATGGCGAACTAGACGAGAACGAATTCGAAGAAGG 1275
Query 1331 GATAATGAAACTACTGAATCATTACAAATTTGATAACCAAGAATCTCCAAGACAGAACAA 1390
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1276 GATAATGAAACTACTGAATCAGTACAAATTTGATAACCAAGAATCTCCAAGACATAACAA 1335
Query 1391 CACATACATTTACAGAACACCATCCGA---T-T-C-TGTTAAGAGCCTATCGCAGGGCGA 1444
||||||||||||||||||||||||||| | | | |||||||| ||| ||| | ||| |
Sbjct 1336 CACATACATTTACAGAACACCATCCGATTCTGTGCATGTTAAGAACCTGTCGAATGGCAA 1395
Query 1445 GGAAGCTGGAGTTTTAAAGCTAGAAATGCCAAAGCAAACTCTTGTTGCTAAATTCCTCTC 1504
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1396 GGAAGCTGGAGTTTTAAAGCTAGAAATGCCAAAGCAAACTCTCGTTGCTAAATTCCTCTC 1455
Query 1505 CATGAGTACCTTAAGAGCTGTGACTAAAGTTATCGGTGGGATGCTAATCGTCGTCTTTCT 1564
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CATGAGAACCTTAAGAGCTGTGACTAAAGTTATCGGTGGGATGCTAATCGTCGTCTTTCT 1515
Query 1565 TGCTAAACCATTTATGGTAAACATTGGACTCTTATCAGTTTCAGCTGGAGTTCCTTCTTT 1624
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1516 TGCTAAACCATTTATGGTAAACATCGGGCTCTTATCGGTTTCAGCTGGAGTTCCTTCTTT 1575
Query 1625 CTACTCAGTATTTGCAGTGATCCCTTTGGTTAGAAACTTGAAGAACACGTTATCTGCACA 1684
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1576 CTACTCAGTATTTGCAGTGATCCCTTTGGTAAGAAACTTGAAGAACACTTTATCTGCACA 1635
Query 1685 CTTCTGTCGAAAGAAAGACAAAGCAAGGATCGCTTCTGAAAAGTTCTCTGAGATTTACAG 1744
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 1636 CTTCTGTCGAAAGAAAGACAAAGCAAGAATCGCATCTGAAATGTTCTCTGAGATTTACAG 1695
Query 1745 GGATGTTACGATGAACAATCTGATGGGAATGTCGATAACATTGGCGATTGTATACTCGAG 1804
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 AGATGTTACAATGAACAATCTGATGGGAATGTCGATAACATTGGCGATTGTATACTCGAG 1755
Query 1805 AGGATTGAAGTGGGAATACTCAATAGAATCTCTTCTTGTTGTGGTAGTTGGCATTGCAAT 1864
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 AGGATTGAAATGGGAATACTCAATAGAATCTCTTCTTGTTGTGGTAGTTGGCATTGCAAT 1815
Query 1865 TGGCTTACCGGCTTATGTGAGATCGACTTATCCGTTCTGGATCTGTGTAATGGCCTTTGC 1924
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 TGGCTTACCGGCTTACGTGAGATCGACTTATCCGTTCTGGATCTGTGTAATGGCCTTTGC 1875
Query 1925 TATGTATATCTTCTCTCTTGTCCTTATCTATATCCATTTTCATCTTCGAGGTCAGAGCTA 1984
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1876 TATGTATATCTTCTCTCTTGTCCTTATCTATATTCATTTTCATCTTCGAGGTCAGAGCTA 1935
Query 1985 AAGCTTTCACCTTTTAGCTCTGATCAGACTAA 2016
|||||||||| |||||||||||||||||||||
Sbjct 1936 AAGCTTTCACTTTTTAGCTCTGATCAGACTAA 1967
Score = 134 bits (72), Expect = 3e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 26 tctcttctcttctcttctcttctcttctcttctctcctcttcAACCTCAATCACTTAACA 85
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TCTCTTCTCTTCTCCTCTGTTCTCTTCTCTTCTCTTTTCTTCAACCTCAATCACTTAACA 60
Query 86 AAACCCTCAGTAGAAAACTTCCACTAA 112
|||||||||||||||| ||||||||||
Sbjct 61 AAACCCTCAGTAGAAACCTTCCACTAA 87
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 2057 TAAGACCATGTTCTTTTGATTAAACTCTGTCTGGTT 2092
|||||||||||||||||||||||||||| |||||||
Sbjct 1965 TAAGACCATGTTCTTTTGATTAAACTCTTTCTGGTT 2000
> Ahg912704 jgi|Araly1|912704|Al_scaffold_0001_2958
Length=3174
Score = 473 bits (256), Expect = 2e-132
Identities = 732/953 (77%), Gaps = 68/953 (7%)
Strand=Plus/Plus
Query 331 AGTATCTCACTCTCGACCCTCCAAAGAACGTTTCCAA-AGCAGCTTGCATCCATGTCTAC 389
||| ||||| ||| || || ||||| | | ||||| || ||||| | |||||||||
Sbjct 140 AGTTTCTCAGTCTTGATCCGCCAAATCGCATCTCCAAGAG-TGCTTGTGTTCATGTCTAC 198
Query 390 GGGTTCCTTCCATGTGCAGACAATATTGGAGGTTATGTCTTCCAAGTTTTTTCCTTTGGC 449
||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 199 GGGTTTCTTCCCTGTGCAGATAATATTGGAGGTTATGTCTTCCAAGTTTTCTCCTTTTGT 258
Query 450 TGTCTCTTGATCATTGGTGACTA-TTTCTTGTCTCAAGGAAGATCCAAACTCTTTGTAAT 508
||||| ||||| || ||||| || ||| |||||| ||||||| || || |||||||| ||
Sbjct 259 TGTCTATTGATAATCGGTGAATACTTT-TTGTCTAAAGGAAGGTCTAAGCTCTTTGTCAT 317
Query 509 CTTCGAGGTCGGGTT-TTATGGTGGTATCGTCTTCCCTCTCCTTACCATGTTCCCAAGAA 567
|||||||||||| || || |||||| ||| |||||||||||||||| |||||||||||||
Sbjct 318 CTTCGAGGTCGGTTTCTT-TGGTGGAATCATCTTCCCTCTCCTTACAATGTTCCCAAGAA 376
Query 568 TTGCCCTTATGATATCGCCTGGACT-AGCAGCGACCCA-CGAGGGT-GCTTTAA-T-GAT 622
| |||||||| ||||| ||||||| | || || || ||| | || || | |||
Sbjct 377 TCGCCCTTATTCTATCGACTGGACTGAT-AG-GAAGCAGCGATA-TCGCA--AACTCGAT 431
Query 623 TGTTGGAAACAACGTTGGAGTTACTATTGGACACACAATCTTTGCTCTGACAATGCAATG 682
|| || || ||||||| |||||| | ||| || | |||||||| |||||||||||||
Sbjct 432 GGTGGGTAATAACGTTGCAGTTACCGTGGGATACTCTGTCTTTGCTTTGACAATGCAATG 491
Query 683 GGGAGCTTGTGTTATCTTTGGTTTGACTAGTCCTAATTCAGATCCATCAATCCGAAGAGG 742
||||||||||||| ||||||| ||| || || | | ||| |||| |||
Sbjct 492 GGGAGCTTGTGTTGTCTTTGGCTTGTCTGGTG-TGAG--AGAAG-ATCACTCC------- 540
Query 743 ATCTATCAAAAGAACATCCTCTGACACAAAGAATCCAAGAAGAGGATTTTACAGGATG-A 801
| || | | | |||||||||| || ||||||| || | || | | || | |
Sbjct 541 -T-TA--A------C-T--TCTGACACAACGAGTCCAAGACGACAAGTTAAGATGA-GCA 586
Query 802 AGATACTAAA-AAGTGTTGTTGAAGCAAGCGTAGATGCGGATCCTAAGAACAAAAAAGCT 860
| |||| || || ||| || ||| |||||| | || |||||||||||||| |||||
Sbjct 587 ATCTACTGAAGAACC-TTGCTGGAGCTAGCGTAAAAGCAGATCCTAAGAACAAGAAAGCG 645
Query 861 GCAGGGATTATGCTCTTGACTCTAGTT-CCATTTC-TCTTAGTGACATTGCCTGATTTAT 918
||||||||||||||| | ||| || || || |||| |||| || ||||| | || ||
Sbjct 646 GCAGGGATTATGCTCCTAACTTTA-TTGCC-TTTCGTCTTGGTCACATTTTCAGAGACAT 703
Query 919 TGGA-TGTACAATCTTGG-AGTGATA-TCATTATGTTGATCACACTCATAATCTCCTG-T 974
| | | | |||||||| | ||| | | || | ||||||||||||||| |||| || |
Sbjct 704 TTCACTCAA-AATCTTGGGA-TGACAAT-ATGGTTTTGATCACACTCATATTCTC-TGGT 759
Query 975 TCTTCAACCT-TTATCTACTTTGTTTACTCGTATTTTGATACGGCAGACCAAAAGAAGAG 1033
||| |||| | || ||||||||||||| | ||||||||||| || |||||| ||||||
Sbjct 760 TCTGCAAC-TGTTCTCTACTTTGTTTATTTGTATTTTGATAAAGCGGACCAAGTGAAGAG 818
Query 1034 CTTAGATCATGCCAAGTTTGAGCTTATGTCAGAAGTTCATAAGCATTTGCAGAGTTTTTC 1093
| |||| || || | ||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 819 CCTAGAACACGCGAGGTTTGAGCTCATGTCAGAAGTTCATAAGCACTTGCAGAATTTTTC 878
Query 1094 GCCTCGAACCCTTATTAGAGATGGACAACTAAGTAAAGAAAGCTTGAAAAGTTTGTTTGA 1153
||||| || ||||| ||| |||||||||||||| ||| ||||||||||||||||| |
Sbjct 879 GCCTCAAAGTCTTATAAGAAATGGACAACTAAGTCGAGAGAGCTTGAAAAGTTTGTTCAA 938
Query 1154 TAAAAT-CGATAGG-AACAAAGATGGGAAGATTCAAATCTCGGAGCTTAAA-GA-CTTAA 1209
||||| |||| | |||||||| || ||||| ||| | || ||| ||||| || || |
Sbjct 939 -AAAATTCGAT-GTCAACAAAGACGGAAAGATCCAAGTTTCAGAG-TTAAAAGATCTGA- 994
Query 1210 CCGTGGAGTTTGGAGTTTTTGGAA-AGATGAAATGTGACATCAATGAGTTTGC 1261
| ||||| ||||| || || || | || |||| ||||| || |||||| ||||
Sbjct 995 CGGTGGACTTTGGGGTGTTAGGGAGAG-TGAAGTGTGATATAAATGAGCTTGC 1046
Score = 254 bits (137), Expect = 3e-66
Identities = 400/523 (76%), Gaps = 33/523 (6%)
Strand=Plus/Plus
Query 1461 AAGCTAGAAATGCCAAAGCAAACTCTTGTTGCTAAATTCCTCTCCAT-GAGTACCTTAAG 1519
||| |||||| ||||||| ||| ||||| | |||| | ||| ||| || ||||| ||
Sbjct 2629 AAGATAGAAAAGCCAAAGGAAAGTCTTGCTACTAAGCTGGTCT-CATGGAAAACCTTGAG 2687
Query 1520 AGCTGTGAC-T-AAAGTTATCGGT-GGGATGCTAATCGTCGTCTTTCTTGCTAA-ACCAT 1575
||| || | | |||| | | | ||||| ||||| ||| ||| |||||| || ||| |
Sbjct 2688 AGC--TGCCTTGGAAGTCA-CTTTAGGGATTCTAATTGTCCTCTATCTTGC-AAGACC-T 2742
Query 1576 TT-ATGGTAAACATTGGA-CTCTTATCAGTTTCAGCTGGAGTTCCTTCTTTCTACT-CAG 1632
|| ||| | |||| | | || || || | ||||||||||||||||| ||||| | |
Sbjct 2743 TTCATGATGAACA-TCCAGCTTTTGTCGGAATCAGCTGGAGTTCCTTCCTTCTA-TGTTG 2800
Query 1633 TATTTGCAGTGATCCCTTTGGTTAGAAACTTGAAGAACACGTTATCTGCACACTTCTGTC 1692
| |||| || || ||||||| |||||| | |||| ||| || || || ||||||||||
Sbjct 2801 TCTTTGTAGCCATTCCTTTGGCAAGAAACCTAAAGAGCACCTTGTCAGCTCACTTCTGTC 2860
Query 1693 GAAAGAAAGACAAAGCAAGGATCGCTTCTGA-AAAGTTCTCTGAGATTTACAGGGATGTT 1751
| ||||||||||||||||| ||| | ||||| | | || |||||||| |||| ||||||
Sbjct 2861 GCAAGAAAGACAAAGCAAGAATCACATCTGACACA-TTTTCTGAGATCTACAAAGATGTT 2919
Query 1752 ACGATGAACAATCTGATGGGAATGTCGATAACATTGGCGATTGTATACTCGAGAGGATTG 1811
|| |||||||||||||||||| | || || | |||||| ||||| ||| | |||| |||
Sbjct 2920 ACAATGAACAATCTGATGGGAGTTTCAATTATATTGGCAATTGTGTACGCAAGAGAATT- 2978
Query 1812 AA-GTGGGAATACTCAATAGAA--TCTC-TTCTTGTTG-TGGTAGTTGGCATTGCAATTG 1866
|| ||||| ||| ||| |||| |||| || ||| || | || ||| | || ||| |
Sbjct 2979 AATTTGGGATTACACAACAGAAGTTCTCATTATTG-TGATCGTTGTTCTC-TT--AATAG 3034
Query 1867 GCTTACCGGCTTATGTGAGATCGACTTATCCGTTCTGGATCTGTGTAATGGCCTTTGCTA 1926
|| |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 3035 GCGTACCGGCTTATGTGAGATCGACTTATCCATTTTGGATATGTGTCTTGGCCTTTGCTC 3094
Query 1927 TGTA-TATCTTCTCTCTTGTCCTTA-TCTATATCCATTTTCAT 1967
| || | || ||||||||||| | | | ||| ||||||| |||
Sbjct 3095 TCTACT-TCATCTCTCTTGTCGT-AGTATATTTCCATTT-CAT 3134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5