BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34040.1
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473107 jgi|Araly1|473107|fgenesh2_kg.1__3061__AT1G29030.1 1275 0.0
Ahg899499 jgi|Araly1|899499|Al_scaffold_0004_149 231 1e-59
Ahg936864 jgi|Araly1|936864|scaffold_501055.1 143 5e-33
> Ahg473107 jgi|Araly1|473107|fgenesh2_kg.1__3061__AT1G29030.1
Length=1771
Score = 1275 bits (690), Expect = 0.0
Identities = 1219/1471 (83%), Gaps = 50/1471 (3%)
Strand=Plus/Plus
Query 107 AATGTCAGAGA-ACCAGTCCGAAGAAGTC-CAGCAAATCGAGAAGCTCTATGAGTTCAG- 163
||||||||| | | | |||||||| | | | || || |||||||| ||||||||| |
Sbjct 79 AATGTCAGA-ACAGTATTCCGAAGATG-CTAAACATATAGAGAAGCTTTATGAGTTC-GA 135
Query 164 TGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAGAATGTTGAGGATTATGAGGGGATCAT 223
|||||| | | | || | |||||||||||||||| || | || ||||| ||||| ||
Sbjct 136 CGAGCGTTTGAGCGAGTCTACGGACAAGTCTCAGAATTTTCAAGACTATGAAGGGATTAT 195
Query 224 TAAGATGTCCAAGACTAGTATGAAGGCAAAGCAGCTT-GCGTCGCAGCTAATTCCTCGCT 282
|| |||| ||||| | || ||| | ||||||||| | | | ||||| ||||| ||||
Sbjct 196 CGAGTTGTCTAAGACAAACATCAAGACCAAGCAGCTTGGAG-CACAGCTGATTCCACGCT 254
Query 283 ACTTCAAGTTCTTC-CCTAGTCTCTCTACTGAGGCTTTCGATGCGCATATGGACTGT-AT 340
|||||||||||||| || |||||| | || || ||||| ||||| | ||||| | | ||
Sbjct 255 ACTTCAAGTTCTTCACC-AGTCTCGCAACAGAAGCTTTTGATGCTTACATGGA-TATAAT 312
Query 341 CGATG-A-TGG-AGATCTTGGGGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTG 397
||| | | ||| || || |||||||| |||||||||||||| ||||| || ||||| ||
Sbjct 313 CGACGAAGTGGAAG-TC--GGGGTACGAGTTCAAGCCATCCGCGGGCTTCCACTGTTCTG 369
Query 398 TAAGGATACGCCAGATATTT-TATCTAAGATTGTTGATGTTCTTGTTCAACTCT-TGAAT 455
|||||||| || || ||| |||| ||||| ||||||||||||| ||| | | | |||
Sbjct 370 CAAGGATACACCTGA-GTTTATATCGAAGATAATTGATGTTCTTGTACAA-TGTCTAAAT 427
Query 456 ACAGAGGAACCT-GTGGAGCGTGATGCTGTGCATAAGGC-TCTGATGTCATTGTTACGAC 513
|| |||||| | ||||||||||||||||| || ||||| | | |||||||| || || |
Sbjct 428 ACTGAGGAA-TTGGTGGAGCGTGATGCTGTACACAAGGCAT-TTATGTCATTATTTCGGC 485
Query 514 AAGATCCAAAAGCATCATCGACTGCCTTATTTACCCATGCTGGGGTTACTCCAACTACTG 573
| ||| |||| ||||| | |||||| || |||| ||| ||| || |||| | | |||
Sbjct 486 AGGATACAAAGGCATCTTTGACTGCATTGTTTAAGCATACTGAGGCCACTCTTAGTGCTG 545
Query 574 ATGATCAAATTCGTGAAAAGGTCTTGA-A-TTTCATCAGAGATAAGGTGATT-CCTCTTA 630
|||| ||||| |||||||||||||| | | ||| ||||||||||||||| || |||||||
Sbjct 546 ATGAGCAAATCCGTGAAAAGGTCTT-ACACTTT-ATCAGAGATAAGGTG-TTCCCTCTTA 602
Query 631 AAGGGGAACTCTTAAAGCCTCAAGAGGAGATGGAAAGACATATAACAGATTTGATCAAAC 690
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 603 AAGGGGAACTGTTAAAGCCTCAAGAGGAAATGGAAAGACATATAACTGATTTGATCAAAA 662
Query 691 AGAGCCTAGAAGATGTAACTGGAGGAGAGTTTAAAATGTTTATGGATTTCCTGACAAGTT 750
|| |||||| ||||||||||||| ||| || || |||||||||| |||| |||||||||
Sbjct 663 AGGGCCTAGGGGATGTAACTGGAGAAGAATTCAATATGTTTATGGGTTTCTTGACAAGTT 722
Query 751 TGAGTATATTTGGAGGCAAAGCTCCTCCAGAAAGAATGCAAGAACTTGTGGAAATTATTG 810
|||||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 723 TGAGTATATTTGGAGGAAAAGCTCCTCAAGAAAGAATGCAAGAACTTGTAGAAATTGTTG 782
Query 811 AAGGACAGGCGGATTTAAATGCACAATTTGAAT-TTTCAGATACGGACCATATTGACAGG 869
|||||||||| ||||| || |||| ||| ||| |||||||||| || ||||||||||||
Sbjct 783 AAGGACAGGCCGATTTGGATTCACAGTTT-AATGTTTCAGATACAGATCATATTGACAGG 841
Query 870 TTGATATCATGCCTGC-AACTGGCTCTTCCCTTTTTTGCGAGAGGTGCTCCAAGCAGCAG 928
|| ||||||||||||| ||| |||||||| || |||||||||||||||||| | ||||
Sbjct 842 TTTATATCATGCCTGCAAAC-AGCTCTTCCATTCTTTGCGAGAGGTGCTCCAGGTAGCAA 900
Query 929 GTTTCTTATCTATTTGAACAA-ACATATCATACCTGTTTTTGACAAGCTCCCAGAAGAGA 987
|||||||| ||| |||||||| | ||||||| |||| |||||||||||| ||||| ||||
Sbjct 901 GTTTCTTAGCTACTTGAACAAGA-ATATCATTCCTGATTTTGACAAGCTGCCAGAGGAGA 959
Query 988 GGAAACTTGATTTGCTCAAAGCACTTGCTGATATTTCTCCATACACAACTGCTCAGGAAG 1047
|||| ||| ||||||||| ||| |||||||| || || ||||||||||| ||||||| ||
Sbjct 960 GGAAGCTTAATTTGCTCAGAGCTCTTGCTGAGATGTCGCCATACACAACAGCTCAGGTAG 1019
Query 1048 CAAGGCAGCTGCTTCCTTCAATCGTTGAGCTTTTAAAGATA-TACATGCCTGCTAGAAAG 1106
|| | ||| ||||||| ||||| ||| |||| ||||||| | |||||||||||||| |||
Sbjct 1020 CACGTCAGATGCTTCCCTCAATTGTTCAGCTCTTAAAGA-AGTACATGCCTGCTAGGAAG 1078
Query 1107 ACTGGAGAGGAAATGAACTTCACATACGTCGAGTGTTTGTTGTATGCGTTTCATCACCTT 1166
||||| || ||||||||||||||||| |||||||| | || || | | ||||||| ||
Sbjct 1079 ACTGGGGAAGAAATGAACTTCACATATGTCGAGTGCCTATTATACGTGCTTCATCA-TTT 1137
Query 1167 -GCCCACAAGGTTCCAAATGCTACAAACAGCTTGTGTGGGTACAAGATTGTGACCGGCCA 1225
|| ||||||| ||||||||| |||||||||||||| || |||||||| |||||||| ||
Sbjct 1138 GGCGCACAAGGCTCCAAATGCAACAAACAGCTTGTGCGGCTACAAGATAGTGACCGGTCA 1197
Query 1226 GCCATCAGACAGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTTACTGAGAGATT 1285
||||||||| ||| | |||||||||||||||||||| |||| || || |||||||||||
Sbjct 1198 GCCATCAGATAGACTCGGGGAGGACTTCTCAGAGTTTTACAAGGAATTCACTGAGAGATT 1257
Query 1286 AACCATTGTTGAGGATCTAACTAAGGCAACGATGAAGAAATTAACTC-AGGGAATGACTG 1344
||||| ||||||||||||||| |||||||| ||||| ||| |||||| |||| |||||||
Sbjct 1258 AACCAGTGTTGAGGATCTAACCAAGGCAACAATGAAAAAACTAACTCAAGGG-ATGACTG 1316
Query 1345 AGCACAACAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAAAG-CGAGTATTAAAACA 1403
|||||| |||||||||||||||||||||||||||||||||||| | | || | |||||
Sbjct 1317 AGCACAGCAAAGCCATGTCGGCTGCTAAGACAGATGAAGAGAA-GTCAAGGGTGAAAACG 1375
Query 1404 AAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAG 1463
|||| ||||| | | ||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1376 AAGAAGCAGAGTGCAACAACTGGACTCAGGACCTGCAATAACATATTGGCAATGACAAAG 1435
Query 1464 CCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAATCTCAAC-CTGTCTTGGAA 1522
|||||| ||||||| ||| | |||||||||||||| | | | | | || ||||||||
Sbjct 1436 GGATTGCACGCAAAAGCGCCTTCATTTATCGGAGACACCAGTGTTA-CTCTTTCTTGGAA 1494
Query 1523 AGAAGCCAC-AAAGCCGTTAGCCTCAACAAC 1552
||||| ||| ||| ||||||||||| |||||
Sbjct 1495 AGAAGTCACGAAA-CCGTTAGCCTCTACAAC 1524
> Ahg899499 jgi|Araly1|899499|Al_scaffold_0004_149
Length=660
Score = 231 bits (125), Expect = 1e-59
Identities = 129/131 (98%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 844 TTTCAGATACGGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTT 903
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTTCAGATACAGACCATATTGACAGGTTGATATCATGCCTGCAACTGGCTCTTCCCTTTT 376
Query 904 TTGCGAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATACCTG 963
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 377 TTGCGAGAGGTGCTCCAAGCAGCAGGTTTCTTAACTATTTGAACAAACATATCATACCTG 436
Query 964 TTTTTGACAAG 974
|||||||||||
Sbjct 437 TTTTTGACAAG 447
Score = 172 bits (93), Expect = 7e-42
Identities = 101/105 (96%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1176 GTTCCAAATGCTACAAACAGCTTGTGTGGGTACAAGATTGTGACCGGCCAGCCATCAGAC 1235
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 556 GTTCCAAATGCTACAAACAGCTTGCGCGGGTACAAGATTGTGACCGGCCAACCATCAGAC 615
Query 1236 AGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTTACTGAG 1280
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 616 AGATTGGGGGAGGACTTCTCAGAGTTGAACAAAGACTTCACTGAG 660
Score = 154 bits (83), Expect = 2e-36
Identities = 103/112 (92%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 1042 AGGAAGCAAGGCAGCTGCTTCCTTCAATCGTTGAGCTTTTAAAGATATACATGCCTGCTA 1101
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 446 AGGAAGCAAGGCAGCTGCTTCCTTCAATCGTTCAGCTTTTAAAGATATGCATGCCTGCCA 505
Query 1102 G--A-AA-GACTGGAGAGGAAATGAACTTCACATACGTCGAGTGTTTGTTGT 1149
| | || ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 506 GCCAGAAAGACTGGAAAGGAAATGAACTTCACATACGTGGAGTGTTTGTTGT 557
Score = 115 bits (62), Expect = 1e-24
Identities = 71/75 (95%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 108 ATGTCAG-AGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTATGAGTTCAGTGA 166
||||||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGTA-AACCAGGCCGAAGAAGTTCAGCAAATCGAGAAGCTCTATGAGTTCAGTGA 59
Query 167 GCGTCTCAATGCCTC 181
|||||||||||||||
Sbjct 60 GCGTCTCAATGCCTC 74
> Ahg936864 jgi|Araly1|936864|scaffold_501055.1
Length=196
Score = 143 bits (77), Expect = 5e-33
Identities = 94/102 (92%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 97 CTTCCTTC-GTAATGTCAGAGAACCAGTCCGAAGAAGTCCAGCAAATCGAGAAGCTCTAT 155
||||| || | |||||||||| | || ||||||||||| ||||||||||||||||||||
Sbjct 44 CTTCC-TCAGCAATGTCAGAGCAGCAATCCGAAGAAGTTCAGCAAATCGAGAAGCTCTAC 102
Query 156 GAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAG 197
||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GAGTTCAGTGAGCGTCTCAATGCCTCCAAGGACAAGTCTCAG 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74885421670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5