BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34080.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321132 jgi|Araly1|321132|fgenesh1_pm.C_scaffold_4001189 1424 0.0
> Ahg321132 jgi|Araly1|321132|fgenesh1_pm.C_scaffold_4001189
Length=1026
Score = 1424 bits (771), Expect = 0.0
Identities = 955/1042 (92%), Gaps = 20/1042 (2%)
Strand=Plus/Plus
Query 82 ATGGCATCAATCATGGTATTGGTCACTGTTTTAATCATTCTTTTCACG-GGTTTCAGAAT 140
||| ||||||||||||| ||||||||| |||| | ||||||||||||| | ||||| ||
Sbjct 1 ATGCCATCAATCATGGTCTTGGTCACTATTTTTACCATTCTTTTCACGACG-TTCAGTAT 59
Query 141 CTCTCAAGCTACGTCTCGTACTGTCATCTTTCGCGAGCAGTCAAT-GGTTGATAAACATG 199
|||||| || |||||||||||||| | ||||| ||| | ||| | | |||| |||||||
Sbjct 60 CTCTCAGGCCACGTCTCGTACTGTAACCTTTCACGAACCGTC-GTCGCTTGAAAAACATG 118
Query 200 AGCAATGGATGGCTCGATTTTCTCGTGAATACCGTGATGAGCTCGAGAAA-AATATGAGA 258
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 119 AGCAATGGATGGCTCGATTTTCTCGTGTATACCGTGATGAGCTCGAGAAACAA-ATGAGA 177
Query 259 CGCGATGTGTTTAAGAAGAACTTGAAGTTCATTGAGAACTTCAACAAAAAAGGGAACAAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGCGATGTGTTTAAGAAGAACTTGAAGTTCATTGAGAACTTCAACAAAAAAGGGAACAAA 237
Query 319 AGCTACAAGCTTGGTGTCAATGAATTCGCGGATTGGACCAACGAGGAGTTCCTAGCAATA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGCTACAAGCTTGGTGTCAATGAATTCGCGGATTGGACCAACGAGGAGTTCCTAGCAATA 297
Query 379 CATACCGGACTAAAGGGCCTAACTGAAGTTTCCCCATCCAAGGTGGTCGCCAAAACGATA 438
||||||||||| ||||| | || | | | ||||||||||||| | ||||||||
Sbjct 298 CATACCGGACTCAAGGG-C---CT--A---T---CTTCCAAGGTGGTCGACGAAACGATA 345
Query 439 TCGTCTCA-GACTTGGAACGTCAGTGACATGGTAGTCGAGAGCAAGGACTGGAGAGCTGA 497
|||||| | | |||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 346 TCGTCT-AGGTCTTGGAACATCAGTGACATGGTAGGCGTGAGCAAGGACTGGAGAGCTGA 404
Query 498 AGGAGCTGTCACTCCTGTCAAGTACCAAGGCCAATGCGGATGTTGCTGGGCATTTTCGGC 557
||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 405 AGGAGCTGTGACTCCTGTCAAATACCAAGGCCAATGCGGTTGTTGTTGGGCGTTTTCGGC 464
Query 558 TGTAGCAGCAGTGGAAGGTGTGGCTAAGATCGCCGGCGGGAACCTTGTATCTCTGTCCGA 617
||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||
Sbjct 465 AGTAGCAGCAGTGGAAGGTGTGACTAAAATCGCCGGTGGGAACCTTGTATCGCTGTCCGA 524
Query 618 ACAACAGCTTCTAGACTGCGACAGAGAGTACGACCGAGGCTGCGACGGTGGGATAATGTC 677
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 525 ACAACAGCTTCTAGACTGCGACAGAGAGTACGATCGAGGTTGCGACGGTGGGATAATGTC 584
Query 678 GGACGCTTTCAACTATGTAGTCCAAAATCGAGGCATCGCATCAGAGAATGACTACTCTTA 737
||||||||||||||| || ||||||| ||||||||||| || ||||| |||||||||||
Sbjct 585 AGACGCTTTCAACTATATAATCCAAAACCGAGGCATCGCTTCGGAGAACGACTACTCTTA 644
Query 738 CCAAGGATCAGATGGGGGATGCCGGTCCAATGCAAGACCAGCTGCACGTATCAGTGGATT 797
|||||||||||||||| |||||||||||| ||||||||| |||||||| ||||| |||||
Sbjct 645 CCAAGGATCAGATGGGAGATGCCGGTCCAGTGCAAGACCGGCTGCACGGATCAGCGGATT 704
Query 798 CCAAACCGTCCCTAGCAACAACGAGCGGGCCTTGCTCGAGGCTGTATCGAGGCAACCAGT 857
||||||||||||||| |||||||| | ||||||||| ||||| |||||||||||||| ||
Sbjct 705 CCAAACCGTCCCTAGTAACAACGAACAGGCCTTGCTTGAGGCCGTATCGAGGCAACCCGT 764
Query 858 CTCTGTGTCGATGGACGCGACTGGGGACGGGTTCATGCATTACTCGGGAGGAGTATATGA 917
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTCTGTGTCGATGGACGCGAATGGGGACGGGTTCATGCATTACTCGGGAGGAGTATATGA 824
Query 918 TGGGCCTTGTGGGACCAGCTCGAACCACGCTGTTACGTTTGTTGGGTATGGAACGAGCCA 977
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 825 TGGGCCTTGTGGGACCAGCTCGAACCATGCGGTTACGTTTGTTGGGTACGGAACGAGCCA 884
Query 978 GGATGGAACTAAGTACTGGCTGGCTAAAAACTCTTGGGGCGAAACTTGGGGAGAAAAAGG 1037
||| || ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 885 GGACGGGACTAAATACTGGCTAGCTAAGAACTCTTGGGGTGAAACTTGGGGAGAAAAAGG 944
Query 1038 TTACATTAGGATCCGAAGAGACGTGGCTTGGCCTCAAGGCATGTGTGGTGTAGCACAGTA 1097
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TTACATTAGAATCCGAAGAGACGTGGCTTGGCCTCAAGGCATGTGTGGTGTAGCACAGTA 1004
Query 1098 TGCTTTTTATCCGGTTGCGTAA 1119
||||||||||||||||||||||
Sbjct 1005 TGCTTTTTATCCGGTTGCGTAA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5