BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34090.2
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482355 jgi|Araly1|482355|fgenesh2_kg.4__1415__AT2G34090.2 2416 0.0
> Ahg482355 jgi|Araly1|482355|fgenesh2_kg.4__1415__AT2G34090.2
Length=1552
Score = 2416 bits (1308), Expect = 0.0
Identities = 1480/1562 (95%), Gaps = 15/1562 (1%)
Strand=Plus/Plus
Query 60 GTGAGATGTTTCATCATTCTCTGTTTCAGTTCGGTAATGGCGGAGATTTGCTATTTTGGG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGAGATGTTTCATCATTCTCTGTTTCAGTTCGGTAATGGCGGAGATTTGCTATTTTGGG 60
Query 120 GGTCTAGTCCATTATAAATCACCATCTCTTCCTTTGTCTCTTCATTCTCTCTTCCGCAGC 179
||||| |||||||||||| ||||| || |||||| ||||||||||||||||||||||||
Sbjct 61 GGTCTGGTCCATTATAAAGCACCA--TC-TCCTTTTTCTCTTCATTCTCTCTTCCGCAGC 117
Query 180 AAGAAGCCACATTACTACAATTCCACTTCTCTCATGGCTGAATGTC-TCTCCTCCTCCAC 238
||||| || |||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 118 ---AAGCCCCAATACTACAATTCCACTTCTCTCATGGCTGAATGTCGT-TCTTCCTCCAC 173
Query 239 CGTGGAGCCTCCTTCTCTCCTCGTCTTCTCAGGTGGTACTGGATTTAATGGTGTGGTTGA 298
|||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||
Sbjct 174 CGTGGAGCCTCCTTCTCTTCTCGTCTTCTCAGGTTGCACTGGATTTAACGGTGTGGTTGA 233
Query 299 AGAGTTGAAGAAGTTAACAACACGAGTCGCTCATGTTCTTCCTGTCTCTGATGATGGTGG 358
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 234 AGAGTTGAAGAAGTTAACAACCCGAGTCGCTCATGTTCTTCCTGTCTCTGATGATGGAGG 293
Query 359 AAGTACTGCTGAGATTGTTCGTGTTCTCGGAGGGCCAGCGGTTGGTGATATACGTTCGAG 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 294 AAGTACTGCTGAGATTGTTCGTGTTCTCGGCGGGCCAGCGGTTGGTGATATACGTTCTAG 353
Query 419 GTGTTTAAGGCTGTCTGATGAGAGTACTTCAGAGGCACTTGCTGTTAGGCGGTTGCTTGG 478
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 354 GTGTTTAAGGCTGTCTGATGAAAGTACTTCTGAGGCACTTGCTGTTAGGCGGTTGCTCGG 413
Query 479 CCATCGCTTACCTATTGATGCACATCAGGCCAAGAAAGATTGGTACGATATTGTAGAAGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CCATCGCTTACCTATTGATGCACATCAGGCCAAGAAAGATTGGTACGATATTGTAGAAGG 473
Query 539 TAATCATTCTCTGTGGGATGGTGTATCAAGACCCTACAGTGAAACAATTCGCGCTTTCTT 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 474 TAATCATTCTCTGTGGGATGGTGTATCAAGACCCTACAGTGAAACAATCCGCGCTTTCTT 533
Query 599 GATATACTTTCAGAATGAGATTCATAGGCGACCTAATGAGAGATTTTGCTTCAGTAATGG 658
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 GATTTACTTTCAGAATGAGATTCATAGACGACCTAATGAGAGATTTTGCTTCAGTAATGG 593
Query 659 AAGCATTGGGAACTTCTTCTTTGCAGGAGCAAGGATATTTTTCCAGTCTTTAGATGCTGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AAGCATTGGGAACTTCTTCTTTGCAGGAGCAAGGATATTTTTCCAGTCTTTAGATGCTGC 653
Query 719 AATTTTTCTGTTTTCACGTGTTTCAGAGATTCCTTGTGACAGTTTGGTCCTCCCAGTGAT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATTTTTCTGTTTTCACGTGTTTCAGAGATTCCTTGTGACAGTTTGGTCCTCCCAGTGAT 713
Query 779 ATCAACCAATGATAGGCTAACACTAGGATGTGAATTACAGGATGGGACTATAATACGCGG 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 714 ATCAACCAATGATAGGCTTACACTAGGATGTGAATTACAGGATGGGACTATAATACGCGG 773
Query 839 ACAGAACGAAATTTCTCACCCGACCACTGGGACTACGCAGACAGTTGACAAGAGACATTG 898
|||||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct 774 ACAGAACGAAATCTCTCACCCGACCAATGGAACTATGCAGACTGTTGACAAGAGACATTG 833
Query 899 TTCTACTTCCGCTCTCCCATCGAAGATAAAGAGAGTGTTTTACATGTCAAGTGAAGGCAA 958
||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTCGAATTCCGCTCTTCCATCAAAGATAAAGAGAGTGTTTTACATGTCAAGTGAAGGCAA 893
Query 959 TAATCTGCTTCATGAGGTCTTCCCACCAGTTAACCCAACTGTCCTAGAGCAGTTGAGAAG 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 894 TAATCTGCTTCATGAGGTCTTCCCACCAGTTAACCCAACTGTCCTGGAGCAGTTGAGAAG 953
Query 1019 CGTGGACTGTATCGTTTACGCAATGGGATCCCTGTTCACTTCCATTTGCCCATCACTGGT 1078
||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 954 TGTGGACTGTATCGTTTATGCAATGGGATCCCTTTTCACTTCCGTTTGCCCATCACTGGT 1013
Query 1079 TTTGCTTGGTGTTGGGGAGATTATCTCTTCCAGGTCATGTCGTAAGGTACTTCTTTTGAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 ATTGCTTGGTGTTGGGGAGATTATCTCTTCCAGGTCATGTCGTAAGGTACTTCTGTTGAA 1073
Query 1139 CGGTAGCCAAGACCGAGAAACAAGCAGGTTCACCGCTTCCTGCTTTGTGACTGCTATCGC 1198
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1074 TGGTAGCCAAGACCGAGAAACAAGCGGGTTCACTGCTTCCTGCTTTGTGACTGCTATTGC 1133
Query 1199 TGACGCTCTCAACAGAACTCATGGAGATACTAATATTCGGCTCAAGAATCCCCCTGGATA 1258
|||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1134 TGACGCTCTCAATAGGACTCATGGAGATCCTAATATCCGGCTCAAGAATCCCCCTGGATA 1193
Query 1259 TTACATCAACACTCTCTTGGTCCCGAAAGATGGAGAAATAGCAGTAGATCTCAAACAATT 1318
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TTACATCAACACTCTCTTGGTCCCGAAAGATGGAGAAATAGCTGTAGATCTCAAACAATT 1253
Query 1319 GTCTGAACAAGGGAT-ATATGATGTTGTCAGTATCTCTTTCCTTCACTTGTTTCCAAGTT 1377
||||||||||||||| | | |||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1254 GTCTGAACAAGGGATCAAA-GATGTTGTTAGTATCTCTGTCCTTCACTTGTTTTCAAGTT 1312
Query 1378 TATGTGCACAACAAACACTCACTGTTACCTCCACTCTATTGCAGAGAGTCGTGGAGA-GT 1436
|||||||||||||||||||||| ||| | ||| || | ||||||||||| ||||| | ||
Sbjct 1313 TATGTGCACAACAAACACTCACCGTTGCGTCCGCTTTGTTGCAGAGAGTTGTGGA-ATGT 1371
Query 1437 GTTGGTGACCCGAAGCACGGTATCTTGTTCAACCCGAGCTCACTGATAAACACACTGGCC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GTTGGTGACCCGAAGCACGGTATCTTGTTCAACCCGAGCTCACTGATAAACACACTGGCC 1431
Query 1497 GGTTTGGTGGAGTAAATAGTGATTCTTTAGGCCAGAGCTAGTTTCTTC-TTCTACGCAAT 1555
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1432 GGTTTGGTGGAGTAAATAGTGATTCTTTAGGCCAGAGCTAGTTTCTTCGTT-TAAGCAAA 1490
Query 1556 TGGGACCATGAttt-ttttGTTACTGTTTAGTTTGATCCTTTAGTGAATTGATATGAAAG 1614
|| ||||| |||| ||||||||||||| | ||||||||||| |||||||||||| ||||
Sbjct 1491 TGAAACCATTATTTCTTTTGTTACTGTTAAATTTGATCCTTTGGTGAATTGATATAAAAG 1550
Query 1615 GT 1616
||
Sbjct 1551 GT 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60563489550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5