BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34100.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321134 jgi|Araly1|321134|fgenesh1_pm.C_scaffold_4001191 765 0.0
> Ahg321134 jgi|Araly1|321134|fgenesh1_pm.C_scaffold_4001191
Length=1038
Score = 765 bits (414), Expect = 0.0
Identities = 708/838 (84%), Gaps = 67/838 (8%)
Strand=Plus/Plus
Query 329 CTGACGTAAAAGAAAAACCGCTTCAACACTGGTCTATGTGCATTGCTGAGGTCAAAGAAA 388
|||| || ||||||| |||| |||||||||||||||||||| || |||||||||||||||
Sbjct 212 CTGAGGTCAAAGAAAGACCGATTCAACACTGGTCTATGTGCCTTTCTGAGGTCAAAGAAA 271
Query 389 AACCGAGCCAACACTGGGCTATGCGTGC-T--TC-AAAATTCCCAGAGAGTTTCACTCAA 444
||||||||||||||||| ||||||||| | || |||||||| ||||||||||| ||||
Sbjct 272 AACCGAGCCAACACTGGACTATGCGTGTATCATCGAAAATTCC-AGAGAGTTTCATTCAA 330
Query 445 GCACAAggtggtgatgat--tg-t-t--atga-aa--attatggtgatggtgctgatggt 495
| |||||||| ||||||| || | | |||| || |||||| ||||| || ||||| |
Sbjct 331 GAACAAGGTGATGATGATGATGCTATTGATGATAATGATTATGATGATGATGATGATGAT 390
Query 496 -attgatgatgatgattatgatgaAGA-GAATAGTGAATCGAGTTTGAAGTGGAACTGTG 553
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 391 GAT-GATGATGATGATTATGATGAAGAAGA-TAGTGAATCGAGTTTGAAGTGGAACGGTG 448
Query 554 ACTATCAGCTGTTAAAGAGTGGCTACTTGTCTTTCGATGAAGAAGAAGAAGAGGATAATG 613
|||| ||||||||||||||||| || ||||||||||| | |||||||||||||||||||
Sbjct 449 ACTACCAGCTGTTAAAGAGTGGTTATTTGTCTTTCGA-G--GAAGAAGAAGAGGATAATG 505
Query 614 ACGATGAAGAAGATGTTGACAT-TTTCTCCGAAGATAG-TGATGATTCATGGAATGAGGA 671
||||||| | |||||||||||| ||| |||||||| || |||||||||||||||||| ||
Sbjct 506 ACGATGATGCAGATGTTGACATGTTT-TCCGAAGA-AGATGATGATTCATGGAATGAAGA 563
Query 672 TTTTGATGATGAAGATGAAGAAGCGGATACTACAGTTTTTAAATATTCCGAAAACATGTC 731
||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 564 TTTTGATGATGAAGATGAAGAAGAGGATACTACAGTTTCTAAATCTTCCGAAAACATGTT 623
Query 732 GGAGCTTGATTTGGGA---TCAGCGACGAATTATACCCCTA-G------T-T--CC-TA- 776
||| ||| ||||||| || ||||||| |||| ||||| | | | || ||
Sbjct 624 GGACCTTAATTTGGGGGCCTCGGCGACGAGCTATATCCCTACGACGAGCTATATCCCTAG 683
Query 777 --CG-ATCATCGT-A-A-TGAAAAAGATAGTGGTTCAAGTTTGACGTGGAAAGGTGGTTA 830
|| | |||||| | | ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 684 TTCGTACCATCGTCATAATGAAAAAGATAGTGGTTCAAGTTTGCCGTGGAATGGTGGTTA 743
Query 831 TCAGCAGTTATATAATGTTGACACGTCTTCCGACGAAGAAGATGAAGAATCATGCGATGA 890
|||||||||| | |||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 744 TCAGCAGTTAAAGAATGTTGACACGTCTTCCGA--A-GAAGATGAAGAATCATGGGATGA 800
Query 891 GGAGGATGATGAAGCTGGGGAATATCACTCTGAAGAAGCGATGGAGATGTCGCGCGAGCA 950
|||||||||||||| |||||| |||||| ||||||||| ||||||||||||||| |||||
Sbjct 801 GGAGGATGATGAAGTTGGGGAGTATCACACTGAAGAAGTGATGGAGATGTCGCGGGAGCA 860
Query 951 GAGAATGAGCGAGCTAAG----GAA--A---GTGCTTCATGACGATGAAGATGACGTATC 1001
|||||||||| |||||| ||| | ||| |||||||||||||||||||||| ||
Sbjct 861 GAGAATGAGCAAGCTAAATAATGAATCATTAGTGGTTCATGACGATGAAGATGACGTGTC 920
Query 1002 --ACA----A---GGATTTGTGAATGTGAGGCGAGAGACAATTGCGAAGAATACGGAATT 1052
||| | ||||||||| |||| |||| |||| ||||| || |||||||||||
Sbjct 921 GGACACGTTACAAGGATTTGTGGATGTCAGGCAAGAGGTGATTGCAAATAATACGGAATT 980
Query 1053 TGGTGAGGTCGAGACCCTTTTACCAGATGGTGATTGGGTTTATGTGAAGAGTGCTTAG 1110
||||||||||||| ||||||||||||| |||||||||||||| || | ||| | ||||
Sbjct 981 TGGTGAGGTCGAGGCCCTTTTACCAGAAGGTGATTGGGTTTACGTTAGGAGGGGTTAG 1038
Score = 433 bits (234), Expect = 2e-120
Identities = 274/294 (93%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 73 ATGGGAGGCGTAGAAGGTAACCAGTGGTTTGATAAGTTTATGGACGAAGTCGGATTGGTA 132
|||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 1 ATGGGAGGCGTAGAAGATAACCAATGGTTTGATAAGTTTATGGATGAAATCGGATTGGTA 60
Query 133 TTTACCAAGGTTGACGAATCGATACAGAAGAGTATTGAACTCTGGACAGAGTTAACCAAA 192
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTTACCAAGGTTGACGAATCGATACAAAAGAGTATTGAACTCTGGACAGAGTTAACCAAA 120
Query 193 GACATATTTGACGACCAGCCTAACCAAGACTTGACCGGACAGCCAGATAATGGTGGATCT 252
|||||||||||||| ||||||||||||| | |||||||||||||||| ||||||| ||||
Sbjct 121 GACATATTTGACGAGCAGCCTAACCAAGGCCTGACCGGACAGCCAGACAATGGTGAATCT 180
Query 253 GGTGATGAACATTCCTCTCAATATCCTGTCTCTGAGGTCAAAGAAAGACCGATTCAACAC 312
||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGTGAAGAAAATTCCTCTCAATATCCTGTCGCTGAGGTCAAAGAAAGACCGATTCAACAC 240
Query 313 TGGTATATGTGCCTTTCTGACGTAAAAGAAAAACCGCTTCAACACTGGTCTATG 366
|||| ||||||||||||||| || |||||||||||| ||||||||| |||||
Sbjct 241 TGGTCTATGTGCCTTTCTGAGGTCAAAGAAAAACCGAGCCAACACTGGACTATG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5