BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34140.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934010 jgi|Araly1|934010|scaffold_401998.1 824 0.0
Ahg921948 jgi|Araly1|921948|scaffold_103229.1 335 4e-91
Ahg901241 jgi|Araly1|901241|Al_scaffold_0004_1891 111 8e-24
> Ahg934010 jgi|Araly1|934010|scaffold_401998.1
Length=556
Score = 824 bits (446), Expect = 0.0
Identities = 511/542 (94%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 61 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACTATTGCATTTA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 19 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATTGCATTTA 78
Query 121 ACACTCGA-ACAATAAAAAATGAAGAAGAGACACACCCGCCGGAGCAAGAAGCCACAATA 179
|| ||| | ||||||||| |||||||||||| ||| || ||||||||||| || |||| |
Sbjct 79 ACTCTC-ACACAATAAAATATGAAGAAGAGAAACAACCACCGGAGCAAGAGGCTACAACA 137
Query 180 GCCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCGGATAAGATCATA 239
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 138 ACCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCAGACAAGATCATA 197
Query 240 GCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAACAACTACAACGTT 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 198 GCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAATAACTATAACGTT 257
Query 300 AATCAGCCTCGACACTTTTGTAAAGGCTGCCACCGTTACTGGACCGCCGGTGGTGCACTC 359
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 258 AATCAGCCTCGACACTTTTGTAAAGACTGCCACCGTTACTGGACCGCCGGTGGTGCACTT 317
Query 360 CGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCTGGTCGTGTCGTGGTT 419
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 318 CGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCAGGCCGTGTCGTGGTT 377
Query 420 GGTATGCTTGGAGATGGAAATGGTGTTCGCCAAGTCGAGCTTATAAATGGCTTGCTCGTT 479
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 378 GGTATGCTTGGAGATGGAAATGGGGTTCATCAAGTCGAGCTTATAAATGGCTTGCTCGTT 437
Query 480 GAGGAGTGGCAGCATGCCGCAGCCGCAGCTCACGGTAGTTTCCGGCATGATTTTCCCATG 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 438 GAGGAGTGGCAGCATGCCGCAGCCGCAGCTCACGGTGGTTTCCGGCATGATTTTCCTATG 497
Query 540 AAGCGGCTCCGGTGTTACTCCGACGGTCAATCGTGCTGATTATAATTATTTACTCTCTTT 599
|||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||
Sbjct 498 AAGCGGCTCCGGTGTTACTCCGACGGTCAATCTTGCTGATTATTATTGTT--CTCT-TTT 554
Query 600 TT 601
||
Sbjct 555 TT 556
> Ahg921948 jgi|Araly1|921948|scaffold_103229.1
Length=573
Score = 335 bits (181), Expect = 4e-91
Identities = 436/551 (79%), Gaps = 49/551 (9%)
Strand=Plus/Plus
Query 61 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACTATTGCATTTA 120
|||| |||||||| ||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 23 TTTTAATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCA 82
Query 121 AC---A-CTCGA-ACA-A---T-AAAAAATGAAGAAG-AG-A-CA-CACCCGCCGGAGCA 166
|| | | | | ||| | | |||||| ||||| | || | || || | ||| ||||
Sbjct 83 ACGCCAACACCACACAGACAGTTAAAAAA-GAAGA-GCAGCAACAACAACAGCCAGAGCT 140
Query 167 AGAAGCCACAATAGCCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCC 226
| |||| |||| | |||||||||||||||| || |||||||||||| |||||||||||
Sbjct 141 ACAAGCAACAACACCCGTTAGATCATCATCGTC---GGATCTGACGGCTGAGAAGCGTCC 197
Query 227 GGATAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAA 286
|| |||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 198 AGACAAGATCATCCCATGTCCGAGATGCAAGTCCATGGAGACTAAGTTCTGTTACTTCAA 257
Query 287 CAACTACAACGTTAATCAGCCTCGACACTTTTGTAAAGGCTGCCACCGTTACTGGACCGC 346
||||||||||||||||| || |||||||| || ||||| || || ||||||||||||||
Sbjct 258 TAACTACAACGTTAATCAACCACGACACTTCTGCAAAGGTTGTCAGCGTTACTGGACCGC 317
Query 347 CGGTGGTGCACTCCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCTGG 406
|||||| || |||||||| ||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 318 CGGTGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGAAAGTCCAAACCTCCGGG 377
Query 407 TCGTGTCG-TGG-TT-G--GTA-T-GCTTGGAGATG-GAAATGGTG---TTCGC-CAAGT 454
||||||| ||| || | | | | |||||||| || || ||| | || | |||||
Sbjct 378 ACGTGTCGGTGGGTTTGCCG-AGTTGCTTGGAGCTGCGAC-TGGAGCCGTT-GATCAAGT 434
Query 455 CGAGCTTATAAATGGCTT-GCTCGTTGAGGAGTGGCAGCATGCCGC-AGCCG-CAGCTCA 511
||||| | | ||| ||| || || ||||||| | | ||||| | | | || | |
Sbjct 435 GGAGCTGG-AC--G-CTTTGCTAGTGGAAGAGTGGC-G-A-GCCGCCA-C-GTCA-C--A 482
Query 512 CGGTAGTTTCCGGCATGATTTTCCCATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATC 571
|||| |||| |||||||||||||| ||||| | || || |||||| |||| ||||||||
Sbjct 483 CGGTGGTTTTCGGCATGATTTTCCGGTGAAGAGACTTCGTTGTTACACCGATGGTCAATC 542
Query 572 GTGCTGATTAT 582
|| | |||||
Sbjct 543 TTGTTAATTAT 553
> Ahg901241 jgi|Araly1|901241|Al_scaffold_0004_1891
Length=264
Score = 111 bits (60), Expect = 8e-24
Identities = 67/70 (96%), Gaps = 2/70 (3%)
Strand=Plus/Plus
Query 638 TTTTCCTCTAAACCCGTTGAAGAACGTGGTGAATTTGGTTGCTATTGGGTACATACAGGC 697
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTTCCTTTAAACCCGTTGAAGAACGTGGTGAATTTGGTTGCTATTGG-TACATACAGGC 59
Query 698 TGGCAAAGTA 707
|||||| |||
Sbjct 60 TGGCAA-GTA 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5