BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34150.2
Length=2811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901243 jgi|Araly1|901243|Al_scaffold_0004_1893 3075 0.0
> Ahg901243 jgi|Araly1|901243|Al_scaffold_0004_1893
Length=2409
Score = 3075 bits (1665), Expect = 0.0
Identities = 1994/2151 (93%), Gaps = 30/2151 (1%)
Strand=Plus/Plus
Query 536 TGGCATCCTCGTATACCAAATGTGCAAAATCACTTTATGTATGACGAATTGCCACCGTTT 595
|||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 277 TGGCATCCTCGTATACCAAATGTGGAAAATCACTTTATATACGACGACCTGCCACCGTTT 336
Query 596 ATTATGACTCCATATGAAGATTGCCGGGAACCTCCGCGGTTACACTTGCTTGACAAATTT 655
| |||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 337 AGTATGGCTCCATATGACGATTGCCGGGAACCTCCGCGGTTGCACTTGCTCGACAAATTT 396
Query 656 GATATAAATGGTCCAGGTTCTTGTTTGAAACGATACTCGGATCCTACTCATTTCAAAAGA 715
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
Sbjct 397 GATATAAATGGTCCAGGGTCTTGTTTGAAGCGATACTCCGATCCTACTCATTTC-----A 451
Query 716 GCATCAAGAGCTTCTAAACCTT-CAGAGATTAAGAAGAAAAAATCTATACAACGCGGTCG 774
| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 452 --A--AAGAGCTTCTAAA-CTTCCAGAAATTAAGAAGAAAAAATCTATACAACGCGGTCG 506
Query 775 AGATATATCAAGACTTGCCTCTGTGGCTAACCAGAGTGACAGGAAGACATGTACTTCTTT 834
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 507 AGATATATCAAGTCTTGCCTCTGTGGCTAACCAGAGTGACAGGAAGACATTTACTTCTTT 566
Query 835 AAGCTTCAGTGGACGAACCTCTACCTCTAAAACTGCTTCAACGATTGAAATTGAGTCGAA 894
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 567 AAGCTTCAGTGGACGAACGTCTACTTCTAAAACTGCTTCAACGATTGAAATTGAGTCGAA 626
Query 895 ATCCGACTTGCAAGAGCATCGTTC-TTTCTCTTTCGATTCAAGAAGTGGTGGAGAGAAAC 953
||||||||||||||| |||||||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 627 ATCCGACTTGCAAGATCATCGTTCGTTT-TCTTTTGATTCCAGAAGTGGTGGAGAGAAAC 685
Query 954 CGAAGAGGGTATCTTCTTCTTCAAGGTTTACACCGGGTTCTCGCACCATTGCTTCAGTTC 1013
||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| ||||
Sbjct 686 CGAAGGGGGTATCTTCTTCTTCAAGGTTTCCACCGGGTTCTCGGACAATTGCTTCGGTTC 745
Query 1014 TTTCTGAAAGTGAAA--G-TG--A-AAGTGATAGTCCTTCTCAAGATTTAACAGCTCGTG 1067
||||||| ||||||| | | | || ||||||||||||||||||| ||||||||||||
Sbjct 746 TTTCTGACAGTGAAAGCGAAGATACAAATGATAGTCCTTCTCAAGATCTAACAGCTCGTG 805
Query 1068 GTTCTTCTAGTGTTAGTTGGCACGAGAAAGCTGAGATAGTGGAATGCAATGTTCTGCAGT 1127
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 806 GTTCGTCTTGCGTTAGTTGGCACGAGAAAGCTGAGATAGTGGAATGCAATGTTCTGCAAT 865
Query 1128 GTGCAACAGATGAAGCTCCTGAAGTAATGGAAACTAACTTTGTCTTGGAT-GCTGAACCG 1186
|||||||||||||| |||||||| ||||||||||||||||||| ||||| || |||||
Sbjct 866 GTGCAACAGATGAAAATCCTGAAGCAATGGAAACTAACTTTGTCGTGGATGGC-GAACCA 924
Query 1187 GTATCAAGACTT-AAAGAACATTCAGCGGTTGAAGCGGTCCAAGATATCAAACCGAAGGA 1245
||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 925 GTATCAAGA-TTGAAAGAACATACAGCGGTTGAAGCGGTCCAAGATATCGAACCGAAGGA 983
Query 1246 ACTGGAAATGGACAATGAGGATGAGACTGAAAGCGAAGGGGATGATTTTGTTGATGCACT 1305
| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 984 ATTGGAAATGGACAGTGAGGATGAAACTGAAAGCGAAGGGGACGATTTTGTTGATGCTCT 1043
Query 1306 TTACACCATCGATTCAGAATCTGAAAATGATGAAGCTTTCCAAGCCACTAAAGAGGTGCA 1365
|||||||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1044 TTACACCATCGACTCGGAATCTGAAAATGATCAAGTTTTCCAAACCACTAAAGAGGTGCA 1103
Query 1366 GAAGAATCTTTACAATGATATTACAGAGCAAGAAACAGAGAAGATTTCTAACAACTTTAG 1425
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GAAGAATCTTTCCAATGAGATTACAGAGCAAGAAACAGAGAAGATTTCTAACAACTTTAG 1163
Query 1426 TGTTGATGAGACAAAATGTGCTGCTACATCAGAGCTACATTTATCATCATCACCGGTATA 1485
|||||||||||||| |||||||||||||||||||||||| || | ||||||||| ||| |
Sbjct 1164 TGTTGATGAGACAATATGTGCTGCTACATCAGAGCTACA-TT-T-ATCATCACCAGTAAA 1220
Query 1486 TAAATCTGATGAACTGATTCATCAAGATCCATGGGCGGCTTCGGAAATAAGTAGTGGCAC 1545
||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1221 TAAATCTAATGAACTGATTCATCAAGATCCATGGGCGGCTTCAGAAATAAGCAGTGGCAC 1280
Query 1546 TCATAGTTATTCCAATGGCTTCTCAAATCCTTTGTATGATATTAGTGGTATCCAAGAACA 1605
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1281 TCATAGTTATTCTAATGGCTTCTCAAATCCCTTGTATGATATTAGCGGTATTCAAGAACA 1340
Query 1606 TCAAGAATCAGAAGAAGTTGAGAGTTCTTGTGACACTGAATCCATTAAAACATGGACTAA 1665
||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1341 TCAAGAATCAGAAGAAGTTAAGACTTCTTGTGACACAGAATCCATTAAAACATGGACTAA 1400
Query 1666 TGGAAATCTCCTAGGACTGAAACCATCGAAACCGAAAATTATAGCAGAAACTATTCCAGA 1725
||||||||| || ||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1401 TGGAAATCTGCTGGGACTGAAACCATCGAAACCGAAGATTATATCAGCAACTATTCCAGA 1460
Query 1726 GATTGTTGAAGACATTGATTCTGAAACCTTCCAAGAGCACTTAAGAGAAGATTATAAGGC 1785
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1461 GATTGTTGAAAACATTGATTCTGAAACCTTCCAAGAGCCCTTGAGAGAAGATTATAAGGC 1520
Query 1786 TCCTTTTGATTGGTTTACTTCATCTCCTCCACTTGATCACATGAAAATATCTTTCAAATC 1845
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1521 TCCTTTTGATTGGTTTACTTCATCTCCTCCACTTGATCACATGAAAATATCATTCAAATC 1580
Query 1846 CTCAGAAACCTTGCCAAGTTCTGAACTACAGCTAAAACTTCCAGATGAATATACATTTTC 1905
| ||||||||||||| || || ||||| |||| ||| ||||||||||||||||||||||
Sbjct 1581 CGCAGAAACCTTGCCGAGCTCCAAACTAGAGCTGAAATTTCCAGATGAATATACATTTTC 1640
Query 1906 TTCGTTTCAGTTGGTGCCAGAGACTATTGCTACTTCACTTCCTGATTCTGATTCAGACAA 1965
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1641 TTCCTTTCAGTTGGTGCCAGAGACTATTGCTACATCACTTCCTGATTCTGATTCAGACAA 1700
Query 1966 GGACACTTTCTGTAGATCTTCTTCTTACATTTCAGACAACAGTGACAATGACAATCGCTC 2025
||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1701 GGATACTTTCTGTAGATCCTCTTCTTACATTTCAGATAACAGCGACAATGACAATCGCTC 1760
Query 2026 TGTGTCAATGTCTGAGCAACAGTGGGAAGAAGAATCAGAAGGTATCCGAGAAAGCAAGAG 2085
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1761 TCTGTCAATGTCTGAGCAGCAGTGGGAAGAAGAATCAGACGGTATCCGAGAAAGCAAGAG 1820
Query 2086 GCAACAAGAGCTCTATGATTCGTTTCACAGAGTCAATGCTGAAGCTTCTTCTCTACCAGT 2145
|||||||||||||||||||| ||||||||| | ||| ||||||||||||||| |||
Sbjct 1821 CCAACAAGAGCTCTATGATTCTTTTCACAGAATTTCTGCAGAAGCTTCTTCTCTATCAGC 1880
Query 2146 TCCATTTCCAAAGATTGAAACAACAAATGGTTGTTTAGTTGAAAATGTCTCTTACCTCCA 2205
|||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct 1881 TCCATTTCCAAAGATTGAAACATCAAATGGTTATTTAGCTGGAAATGTCTCTTACCTCCA 1940
Query 2206 AAATCCAGCTGAGCCATTACCACCGCCTCTCCCACCGTTACAGTGGATGGTTTCGAAA-A 2264
||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
Sbjct 1941 AAATCCAGCTGAGCCGTTGCCACCGCCTCTCCCACCGTTACAGTGGATGGTATC-AAAGA 1999
Query 2265 TACCGTCAGCTG-GATTCGAGGATAACAACAAGCAGTCTCTAAAGGATGCTCTCACACAG 2323
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2000 TACCGTCAGG-GAGATTCGAGGATAACAACAAGCAGTCTCTAAAGGATGCTCTCATACAG 2058
Query 2324 GCATTTGAGAAGAACAACAATTCTTTAACTGCAGTCAAGAAAAAAGAACCACACATTGTC 2383
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2059 GCATTTGAGAAGAACAACAATTCTTTAACTGCAGTCAAGAAAGAAGAACCAAACATTGTC 2118
Query 2384 ACTGTTTCTGATCCTAAACTTGTAACCAAGGTACATCTGAAGAACAATGTGAGGGATTAT 2443
|||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||
Sbjct 2119 ACTGTTTCTGATCCTAAACTGGAAAACAAGGTACATTTGAAGAACAATGTGAGGGATTAT 2178
Query 2444 AAGCAAAGTCATGGCAACACAAATGAGACAGAAGCTGGAGACTTCTTGCATCAAATTCGA 2503
||||||||||| ||||||| ||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 2179 AAGCAAAGTCAAGGCAACAAAAAAGAGACAGATGCTGGTGACTTCTTGCATCAAATCCGA 2238
Query 2504 ACTAAACAATTCAACTTGAGACGTGTGGTCAGGACAAAGACATCATCATCAGAAACTACA 2563
|| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2239 ACAAAACAATTCAACTTGAGACGTGTGGTCACGACAAAGACATCATCATCAGAAGCTACA 2298
Query 2564 ATGAACACCAATATTAGCGTGATTCTAGAGAAGGCAAACTCTATCCGACAGGCTGTAGCA 2623
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 ATGAACACCAATTTTAGCGTGATTCTAGAGAAGGCAAACTCTATCCGACAGGCTGTAGCA 2358
Query 2624 AGCGACGATGGAGAAGGCGAAAGCGATACATGGAGCGATAGCGACACATGA 2674
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2359 AGCGACGATGGAGATGGCGAAAGCGATACATGGAGCGATAGCGACACATGA 2409
Score = 427 bits (231), Expect = 2e-118
Identities = 261/276 (95%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 209 ATGCCGCTTGTTAGGCTCCAAGTTAGGAATGTCTACGGTTTAGGGCAAAAAGAGCTTCAC 268
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1 ATGCCGCTTGTTAGGCTCCAAGTTAGGAACGTCTACGGTTTAGGGCAACCGGAGCTTCAC 60
Query 269 ACAAAAGTCGACCGTGAAGACCCTAAAGCGATTCTCGACGACGTCGCCGTTTCTGGACTC 328
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ACCAAAGTCGATCGTGAAGACCCTAAAGCGATTCTCGACGGCGTCGCCGTTTCTGGACTC 120
Query 329 GTCGGGATCTTGCGTCAACTCGGTGATCTCACAGAATTCGCAGCAGAGATATTCCATGGA 388
| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 121 ATTGGGATCTTGCGTCAACTCGGTGATCTGACCGAGTTTGCAGCAGAGATATTCCATGGA 180
Query 389 ATACAAGAGGAGGTAATGATAACAGCATCAAGAAGCAACAAATTGAAGATGAGATTGAAG 448
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 181 ATACAAGAGGAGGTAATGATAACAGCATCAAGAAGCAATAAATTGAAGATGAGACTGAAG 240
Query 449 CAAATAGAAGCTAAAGTTCCTACAATCCAAAAGACA 484
||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAATAGAAGCTAAAGTTCCTACAATCCAAAAGACA 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106081332325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5