BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34160.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482359 jgi|Araly1|482359|fgenesh2_kg.4__1419__AT2G34160.1 846 0.0
Ahg473131 jgi|Araly1|473131|fgenesh2_kg.1__3085__AT1G29250.1 462 1e-129
> Ahg482359 jgi|Araly1|482359|fgenesh2_kg.4__1419__AT2G34160.1
Length=569
Score = 846 bits (458), Expect = 0.0
Identities = 535/572 (94%), Gaps = 6/572 (1%)
Strand=Plus/Plus
Query 53 TTAGGGTTACGGATTCCG-ATTAGCAAGCATGGAAGAGATCACCGATGGAGTGAACAACA 111
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTAGGGTTACGGATTCCGAATTAGCAACCATGGAAGAGATCACCGATGGAGTGAACAACA 60
Query 112 TGAACTTAGCCACCGATTCGCAGAAGAAAAACCGGATTCAGGTTTCCAACACTAAGAAAC 171
||||||| ||| ||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 61 TGAACTTGGCCGTTGATTCCCAGAAGAAAAATCGGATTCAGGTTTCAAACACCAAGAAAC 120
Query 172 CATTGTTCTTCTATGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGATGTTGAAT 231
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CATTGTTCTTCTACGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGATGTCGAAC 180
Query 232 TGTCTGCCCTTGGCATGGCCATTGCAACTGTTGTTACTGTTACTGAAATACTGAAGAACA 291
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TCTCTGCCCTTGGAATGGCCATTGCAACTGTTGTTACTGTTGCTGAAATACTGAAGAACA 240
Query 292 ATGGTTTTGCTGTTGAGAAGAAGATCATGACTTCAACTGTTGATATTAAGGATGA-TGCA 350
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
Sbjct 241 ATGGTTTTGCTGTTGAGAAGAAGATTATGACTTCAACTGTGGATATTAAGGATGACT-CG 299
Query 351 AGAGGACGTCCTGTGCAGAAAGCTAAGATTGAGATTACGCTTGTGAAGTCAGAGAAGTTT 410
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 300 AGAGGACGTCCTGTGCAGAAAGCTAAGATTGAAATTACGCTTGCAAAGTCAGAGAAGTTT 359
Query 411 GATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGATGCAGAAGCTCAGGTGCAGAAC 470
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 GATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGCTGCAGAAGCTCAGGTGCAGAAC 419
Query 471 TGAAAATAGCTTTTAACTATTTTGGGTTTCTTGATGCTTATTCTATAAAGGGCTTTATTT 530
||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 420 TGAAATTAGCTTTTTACTATTTTGGTTTTCTTGATGCTTATTTTATAAAGGGCTTTATTT 479
Query 531 GTTTAATTTCATTAATTTTTGGCTTGTT-ATCACAATGGATGGTTTGTTGTATCTGTTAA 589
|||| ||||||||||||||||||||||| |||| | |||||| ||||||||| |||||||
Sbjct 480 GTTTTATTTCATTAATTTTTGGCTTGTTTATCA-A-TGGATGATTTGTTGTACCTGTTAA 537
Query 590 CTTTTGATAGGAAGAATGATAGCTAAACAATA 621
| ||||||| ||||||||||||||||||||||
Sbjct 538 CATTTGATATGAAGAATGATAGCTAAACAATA 569
> Ahg473131 jgi|Araly1|473131|fgenesh2_kg.1__3085__AT1G29250.1
Length=690
Score = 462 bits (250), Expect = 1e-129
Identities = 344/391 (88%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 81 ATGGAAGAGATCACCGATGGAGTGAACAACATGAACTTAGCCACCGATTCGCAGAAGAAA 140
|||||||||||||| || |||| |||||||||||||| ||| |||| | ||||||||
Sbjct 118 ATGGAAGAGATCACGGAAAGAGTTAACAACATGAACTTGGCCGTCGATACCCAGAAGAAG 177
Query 141 AACCGGATTCAGGTTTCCAACACTAAGAAACCATTGTTCTTCTATGTCAATCTCGCCAAG 200
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 AATCGGATTCAAGTTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 237
Query 201 AGGTATATGCAGCAGTACAATGATGTTGAATTGTCTGCCCTTGGCATGGCCATTGCAACT 260
||||| ||||||||||||| |||||| ||||||||||| || || ||||||||||| |||
Sbjct 238 AGGTACATGCAGCAGTACACTGATGTCGAATTGTCTGCACTAGGAATGGCCATTGCTACT 297
Query 261 GTTGTTACTGTTACTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAAGATCATG 320
|||||||| || |||| ||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 298 GTTGTTACGGTCGCTGAGATATTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATG 357
Query 321 ACTTCAACTGTTGATATTAAGGATGATGCAAGAGGACGTCCTGTGCAGAAAGCTAAGATT 380
|| || ||||| ||||| ||||||||| |||| || ||||||||||||||||| ||||||
Sbjct 358 ACCTCGACTGTGGATATCAAGGATGATTCAAGGGGTCGTCCTGTGCAGAAAGCCAAGATT 417
Query 381 GAGATTACGCTTGTGAAGTCAGAGAAGTTTGATGAACTAATGGCTGCAGCCAATGAAGAA 440
||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GAGATCACGCTTGCCAAGTCTGAGAAGTTTGATGAATTAATGGCTGCAGCCAATGAAGAG 477
Query 441 AAAGAAGATGCAGAAGCTCAGGTGCAGAACT 471
|| || | ||||||||| || | ||||||||
Sbjct 478 AAGGAGGCTGCAGAAGCCCAAGAGCAGAACT 508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5