BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34170.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321137 jgi|Araly1|321137|fgenesh1_pm.C_scaffold_4001194 2305 0.0
> Ahg321137 jgi|Araly1|321137|fgenesh1_pm.C_scaffold_4001194
Length=1572
Score = 2305 bits (1248), Expect = 0.0
Identities = 1479/1587 (93%), Gaps = 30/1587 (2%)
Strand=Plus/Plus
Query 84 ATGGCGGAGAAACAACTTAACTTCGATGCACCTCTTCTTTCAACAAGGAGGATGAAAAAA 143
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGGCGGAGAAAAAACTTAACTTCGATGCACCTCTTCTTTCAACGAGGAGGATGAAGAAA 60
Query 144 TCTGCAATCTCTGTACGCAGAAACATGCCAAAGCAGCTCACTGATGAGTCCAAGACAAGT 203
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TCGGCAATGTCTGTACGCAGAAACATGCCAAAGAAGCTCACTGATGAGTCCAAGACAAGT 120
Query 204 GAATCTCTTTCTGTTTCAGTTCTTGTCCAAGA-CATGGGTT-TAG-ATCAG-----GTT- 254
||||||||| |||||||||||||||| | || || |||| | ||| | |||
Sbjct 121 GAATCTCTTCCTGTTTCAGTTCTTGT-C--GATCA--GGTTCCGGAATCTGCCTCTGTTC 175
Query 255 C-C-GGATTCTCCCTTGGAGAGTAAACATGTAGAAGAAGAAGCAGAAGAGAGTGAAGATG 312
| | | |||||||||||| | ||||||||||||||| | |||| ||||||||||||||
Sbjct 176 CTCTCAAATCTCCCTTGGAGGGCAAACATGTAGAAGAACATGCAGGAGAGAGTGAAGATG 235
Query 313 ATGATGTTTTCTCTGATGCCCTTGATACATTGTCTCTAAAGCAAAGCATAAGTGGTGGTG 372
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 236 ATGATGTTTTCTCTGATGCCCTTGATACATTGTCTCTAAAGCATAGCATAAGTGGTGGTG 295
Query 373 GTGGTGTTGAGGCAATGAAACCGTCAATGCCATCTGAGGATCCTCAATTCATGTTGGATC 432
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 TTGTTGTTGAGGCAATGAAACCGTCAATGCCATCCGAGGATCCTCAATTCATGTTGGATC 355
Query 433 GTTTCTTACCTGCTGCGAAATCCTTGACTCTGGAGCAACCACCTCAATATTCTTGGAAGC 492
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 356 GTTTCTTACCTGCTGCGAAATCCATGACTGTGGAGCAACCACCTCAATATGCTTGGAAGC 415
Query 493 GACAGCCATTGCCCCTCATGTCAGAACCAATGAGACAGATTAGAGATATAGTACCAGCAG 552
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 416 GACAACCATTGCCCCTCATGTCTGAACCAATGAGACAGATTAGGGATATAGTACCAGCAG 475
Query 553 AGAATCGTGCAACTCCTACAAGGTATGAGTCTAGTTTTACTCCATCTTATTATCAGGACA 612
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 AGAATCGTGCAACTCCTACAAGGTATGAGTCTAGTTTTACACCATCTTATTATCAGGACA 535
Query 613 TAGATGACGAAGAAAGCGAGGAGGATTCAGATGACGATGAAGTTTCTGAGTATCTTTCTA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TAGATGACGAAGAAAGCGAGGAGGATTCAGATGACGATGAAGTTTCTGAGTATCTTTCTA 595
Query 673 AGAGAGGCTGTGGTATGATGTCTCCACAAATCTGCTTTAAAAACTCACTCGGTATGCTGA 732
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 596 AGAGAGGCTGTGGGATGATGTCACCACAAATCTGCTTTAAAAACTCACTCGGTATGCTGA 655
Query 733 GCTCAGTGAATGGTCTTAAAGAGAAACCTTACTCTCTGAGAACCCCAAGCCATGATCAAG 792
|||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 656 GCTCAGTGCATGGTCTTAAGGAGACACCTTACTCCCTGAGAACCCCAAGCCATGATCAAG 715
Query 793 TGAAGTCAAGCAAGGTCGCTCAGCTCAAATCTCGGTTCCAATCTGTGAAAAAGCTCGCTC 852
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 TGAAGTCAAGCAAGGTCGCTCAGCTCAAATCGCGGTTCCAATCTGTGAAAAAGCTCGCTC 775
Query 853 TTGATTATAAGCAAAAGTTGGGAAGTATAGCTCAGTCTCCAGTACACCCAAGTGTTGGGA 912
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 776 TTGATTATAAGCAAAAGTTGGGAAGTTTAGCTCAATCTCCAGTACACCCAAGTGTTGGCA 835
Query 913 AGAAGTTTAACTTTGGTTCTGAACAACATGAATCGAA---GAGTTCTGCAAGTAGGCCAT 969
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 836 AGAAGTTTAACTTTGGATCTGAACAACATGAATCGAACCTGAGTTCTGCAAGTAGGCCAT 895
Query 970 CATCTCCTTACAGACAAAATGGCTGTATGTCACCGTATCGCAGTGTAGGAAACAGTTCTC 1029
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 CATCTCCTTACAGACAAACTGGCTGTATGTCACCGTATCGCAGTGTAGGAAACAGTTCAC 955
Query 1030 CTCTTCACGCTGCGGGTTT-CCCTGGGACTCGTAAGGAAGCAGAGGTTATGAGAGCTAAC 1088
|||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 956 CTCTTCACCCTGCGGGTTTTCCC-GGGACTCGTAAGGAAGCAGAGATTATGAGAGCTAAC 1014
Query 1089 AGGTTGAACAAGCATATCAGAAACATAAGCAAGTCTCACGAATCACTCTATCCAAAAAGT 1148
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1015 AGGTTGAACAAGCATATAAGAAACATAAGCAAGTCTCAGGAATTACTCTATCCAAAAAGT 1074
Query 1149 ACAAAACAAGACTGTTCAACGAGCTCTGCCATGGAGAAGACATTATATGTTGACTCAGAG 1208
|||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1075 ACAAGACAAGCCTGTTCAACAAGCTCTGCCATGGAGAAGACATTATATGTTGACACAGAG 1134
Query 1209 AATTCTCCAAGGACCAGCAATGAGAATCGTAGCTCTAATGTCAAGAAATTGCCAGAAACA 1268
|||||||||| |||||||||||| || | | ||| ||||||||||| ||||||||||||
Sbjct 1135 AATTCTCCAAAGACCAGCAATGACCATGGAAACTCGAATGTCAAGAATTTGCCAGAAACA 1194
Query 1269 ATTTCAGAGGAACCTGAAATGGAGGGAAAGAAACCGAAAGCCGTTCGCGAGCTTAAGGCT 1328
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1195 ATTTCAGAGGAACCTGAAATGGAGGGAAAGAAACCGAAAGCCGCTCACGAGCTTAAGGCT 1254
Query 1329 GTAGAAACTCTTAGTATTAGCAGTGGAGTCAAGATGATGAAGGCAGATGAGTTGGGAAAG 1388
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1255 GTAGAAACTCTTACTATTAGCAGTGGAATCAAGATGGTGAAGGCAGATGAGTTGGAAAAG 1314
Query 1389 AACAACAGTGGCTGTGATCTATCTCCACTTGCTCCGCCGCCACCCAAAAAGCCTTCCGAG 1448
|||||||||||||||||||||||||||| | || ||||||||||||||| |||
Sbjct 1315 AACAACAGTGGCTGTGATCTATCTCCAC---CACC------ACCCAAAAAGCCTTCTGAG 1365
Query 1449 TCTTGGCTTTTCAGTAATCTGCCGTCAGTAAGCTCAAAGATCCCTTCACCGAGATACCTG 1508
|||||||||||||||||||| || ||||||||||| ||||||||||||| |||||| |||
Sbjct 1366 TCTTGGCTTTTCAGTAATCTTCCTTCAGTAAGCTCGAAGATCCCTTCACGGAGATATCTG 1425
Query 1509 TTTCATCCCCaaaaaaaGAATGTTGAAGAAAACTCCACAAGTGTTACCAAGTGGGAAACT 1568
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1426 TTTCATCCCCAAAAAAAGAATGTCGAAGAAAACTCCACAATTGTTACCAAGTGGGAAACT 1485
Query 1569 ATAGTCAAGACTTCTTATACGCACAGAGATCATATACGCTATTCTGAAGAACTCGTTGCT 1628
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1486 ATAGTCAAGACTTCTTATACACACAGAGATCACATACGCTATTCTGAAGAACTCGTTGCT 1545
Query 1629 CATTCATCTTGCCAATCAAAAACTTAG 1655
| |||||| ||||||||||||||||||
Sbjct 1546 CGTTCATCCTGCCAATCAAAAACTTAG 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5