BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34180.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934014 jgi|Araly1|934014|scaffold_402002.1 2307 0.0
Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1 318 6e-86
> Ahg934014 jgi|Araly1|934014|scaffold_402002.1
Length=1558
Score = 2307 bits (1249), Expect = 0.0
Identities = 1433/1521 (94%), Gaps = 15/1521 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTACTATCTACACCGTTGGCCATCCCCGGCCCAACGCCAATACAATTCATG 60
|||||||||||||||||| |||| |||| ||| |||||||||||||||| |||||||||
Sbjct 21 ATGGCTCAAGTACTATCTCCACCAATGGCTATCACCGGCCCAACGCCAATGCAATTCATG 80
Query 61 GCGGGTCTTCTTGCTCGAATCGTTACAAAAAATACGAACAAAGAGACCAGTACTCCAGAG 120
||||||||||| | ||||||| |||| ||| | |||| |||||||| |||||||||||||
Sbjct 81 GCGGGTCTTCTCGGTCGAATCATTACTAAAGACACGAGCAAAGAGATCAGTACTCCAGAG 140
Query 121 AGCCCGAGGAGTCCGCGGACTCCACAAGGCTCTATTCTCATGGACAAGTACGAAATAGGA 180
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 141 AGCCCGAGGAGTCCGCAGACTTCACAAGGCTCTATTCTCATGGACAAGTACGAGCTAGGA 200
Query 181 AAGCTTCTTGGCCACGGAAGCTTCGCTAAGGTCTATTTAG-CACGGAACATTCATTCTGG 239
|| ||||| || ||||||||||||||||| |||||| ||| || ||||||| |||| ||
Sbjct 201 AAACTTCTCGGTCACGGAAGCTTCGCTAAAGTCTATCTAGCCA-AGAACATTAATTCCGG 259
Query 240 CGAGGATGTTGCCATCAAAGTCATTGACAAGGAGAAGATAGTGAAGAGTGGATTGGCCGG 299
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 260 CGAGGATGTTGCCATCAAAGTCATTGACAAGGAGAAGATCGTGAAGAGCGGAATGGCCGG 319
Query 300 TCATATTAAACGGGAGATTTCAATCCTCCGCCGTGTCCGCCACCCTTACATTGTACACCT 359
|||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct 320 TCATATAAAACGGGAGATCTCTATCCTCCGACGTGTCCGCCACCCTTACATTGTCCACCT 379
Query 360 ACTCGAGGTTATGGCTACGAAGACAAAGATTTACATTGTGATGGAGTACGTTCGAGGCGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 380 ACTCGAGGTTATGGCTACGAAGACAAAGATTTACATTGTGATGGAGTACGTACGAGGCGG 439
Query 420 AGAGCTTTATAATACGGTGGCTAGAGGACGGCTTCGAGAAGGAACCGCGAGGAGATATTT 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 440 AGAGCTTTATAATACGGTGGCTAGAGGCCGGCTTCGAGAAGGAACCGCGAGGAGATATTT 499
Query 480 CCAGCAGTTGATCTCATCCGTTGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCT 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CCAGCAGTTGATCTCAGCCGTTGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCT 559
Query 540 CAAGCTTGAGAATCTGCTTTTGGACGACAAGGGGAACGTGAAAGTCTCTGACTTTGGGCT 599
||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||
Sbjct 560 CAAGCTTGAGAATCTGCTTTTGGACGATATGGGAAACGTTAAAGTCTCTGACTTTGGGCT 619
Query 600 CAGCGTTGTCTCGGAGCAGCTCAAGCAAGAAGGAATCTGTCAAACGTTTTGCGGGACACC 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 620 CAGCGTTGTCTCGGAGCAGCTCAAGCAAGACGGAATCTGTCAAACGTTTTGCGGGACGCC 679
Query 660 AGCTTATTTGGCGCCTGAGGTTTTGACAAGGAAAGGTTATGAAGGTGCAAAAGCCGATAT 719
|||||| |||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 680 GGCTTATCTGGCGCCTGAGGTTTTGACAAGGAAAGGGTATGATGGTGCCAAGGCCGATAT 739
Query 720 TTGGTCTTGTGGAGTGATCTTGTTTGTATTGATGGCTGGTTATCTTCCATTTGATGACAA 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 740 TTGGTCTTGTGGAGTGATCTTGTTTGTGTTGATGGCTGGTTATCTTCCATTTGATGACAA 799
Query 780 GAACATATTGGTTATGTATACA-AAGATATATAAAGGGCAGTTTAAGTGTCCTAAATGGT 838
|||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||
Sbjct 800 GAACATATTGGTTATGTACA-AGAAGATATATAAAGGGCAGTTTAAATGTCCTAAATGGT 858
Query 839 TTTCTCCTGAGCTTGCAAGGCTTGTGACCCGGATGCTAGACACGAATCCAGATACCCGAA 898
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 859 TTGCTCCTGAGCTCGCAAGGCTTGTGACCCGGATGCTAGACACGAATCCGGATACCCGAA 918
Query 899 TCACAATACCGGAGATCATGAAGCATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAAT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TCACAATACCGGAGATCATGAAGCATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAAT 978
Query 959 TCTATATTGAAAACGATAAGTTATGTAGGGAGGATGATGACAATGATGATGACGATTCAT 1018
||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 979 TCTATATCGAAAACGATAAGTTGTGTAGGGAGGATGATGACAATGATGAAGACGATTCTT 1038
Query 1019 CATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAAGGAGATGCAGAGTTTGATATTA 1078
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1039 CATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAAGGAGATGTAGAGTTTGATATTA 1098
Query 1079 AAAGGGTTGATTCAATGCCGAGACCCGCGAGTCTAAACGCATTTGACATCTTATCGTTCT 1138
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1099 AAAGGGTTGATTCAATGCCGAGACCCGCCAGTCTAAACGCATTTGACATCATATCGTTCT 1158
Query 1139 C----AG-----ATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGGAGCAAGGTTTGTAT 1189
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTTCGAGTTTGGATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGGAGCAAGGTTTGTAT 1218
Query 1190 CTGCTGCTCCTATGACAAAGATCATATCGAAATTGGAAGAGATTGCCAAAGAGGTGAAA- 1248
||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 1219 CTGCTGCTCCTGTGAAAAAGATCATATCGAAACTGGAAGAGATTGCGAAAGAGGT-AAAC 1277
Query 1249 TTTATGGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGTAGAGAAGGAGCTAAA 1308
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1278 TTTACAGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGTAGAGAAGGTGCTAAA 1337
Query 1309 GGACCGTTGACAATTAGAGTCGAGATCTTTGAGCTGACGCCATCTCTTGTGGTGGTTGAA 1368
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGACCGTTGACAATTAGAGTTGAGATCTTTGAGCTGACGCCATCTCTTGTGGTGGTTGAA 1397
Query 1369 GTGAAGAAGAAAGGAGGAAATATAGAAGAGTATGAAGAGTTTTGCAACAAGGAACTTAGA 1428
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GTGAAGAAGAAAGGAGGGAATATAGAAGAGTATGAAGAGTTTTGCAACAAGGAACTTAGA 1457
Query 1429 CCACAGCTGGAGAAACTGATGCATTACCAAGCAGATGAAGTTGAAGAAGTAATGTGTTTG 1488
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1458 CCACAGCTGGAGAAACTGATGCATTACCAAGCAGATGAAGTTGAAGAAGCAATGTGTTTG 1517
Query 1489 CCACCTGAAATTGAACAGTGA 1509
||||||||||||||| |||||
Sbjct 1518 CCACCTGAAATTGAAAAGTGA 1538
> Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1
Length=1452
Score = 318 bits (172), Expect = 6e-86
Identities = 966/1338 (72%), Gaps = 100/1338 (7%)
Strand=Plus/Plus
Query 144 ACAAGGCTCT-ATTCTCATGGACAAGTACGAAATAGGAAAGCTTCTTGGCCACGGAAGCT 202
|||| ||||| | || | ||| ||| || ||||| || | |||||||||||| |||| ||
Sbjct 60 ACAA-GCTCTGA-TC-CTTGG-CAAATATGAAATGGGTAGGCTTCTTGGCCATGGAACCT 115
Query 203 TCGCTAAGGTCTATTTAGCACGGAACATTCATTCTGGCG-AGGATGTTGCCATCAAAGTC 261
| ||||| || ||| | ||| | ||| ||| ||||| | | | || |||||||| ||
Sbjct 116 TTGCTAAAGTTTATCTCGCAAGAAACGCTCAATCTGGAGAAAG-CGTAGCCATCAAGGTA 174
Query 262 ATTGACAAGGAG-AAGATAGTGAAGA-GTGGATTGGCCGGTCATATTAAACGGGAGATTT 319
|| ||||| ||| ||| | | || | ||| || || || || ||||| ||||| |
Sbjct 175 ATAGACAAAGAGAAAG-TTCTCAA-ATCTGGTTTAATCGCACACATCAAACGCGAGATCT 232
Query 320 CAATCCTCCGCCGTGTCCGCCACCCTTACATTGTACACCTACTCGAGGTTATGGCTACGA 379
| ||| | || ||||| || || || |||| || || ||| |||| || ||||||||||
Sbjct 233 CGATCTTGCGTCGTGTTCGTCATCCAAACATCGTTCAGCTATTCGAAGTCATGGCTACGA 292
Query 380 AGACAAAGATTTACATT-GTGATGGAGTACGTTCGAGGCGGAGAGCTT-TAT-AATACGG 436
|| | ||||| || || || ||||| || ||| ||| || || || | | || | ||
Sbjct 293 AGTCCAAGATCTA-TTTCGTAATGGAATATGTTAAAGGAGGTGA-ATTGT-TCAACAAGG 349
Query 437 TGGCTAGAGGACGGCTT-CGAGAAGGAACCGCGA-GGAGATATTTCCAGCAGTTGATCTC 494
| |||| |||| || || ||||| || || | | |||||||| || || ||||||||
Sbjct 350 TAGCTAAAGGAAGG-TTAAAAGAAGAAATGGC-ACGTAGATATTTTCAACAATTGATCTC 407
Query 495 ATCCGT-TGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCTCAAGCTTGAGAATC 553
|||| || ||| || ||| ||| |||||||| || || ||| | || | |||||||
Sbjct 408 CGCCGTATGGTTT-TGTCACTTCCGTGGTGTTTATCATCGAGATTTGAAACCGGAGAATC 466
Query 554 TGCTTTTGGACGACAAGGGGAACGTGAAAGTCTCTGACTTTGGGCTCAGCGTTGTCTCGG 613
| ||||| ||||| || || ||| | ||||||||||| ||||| || || | ||| || |
Sbjct 467 TTCTTTTAGACGAAAATGGAAACCTAAAAGTCTCTGATTTTGGTCTTAGTGCTGTTTCTG 526
Query 614 AGCAG-CTCAAGCAAGAAGGAATCTGTCAAACGTTTTGCGGGACACCAGCTTATTTGGCG 672
| ||| || | ||||| || | | ||| || ||||| ||||| || ||||| ||||
Sbjct 527 ATCAGATTCGA-CAAGATGGGTTATTTCATACTTTTTGTGGGACCCCTGCTTACGTGGCA 585
Query 673 CCTGAGGTT-TTGACAAGGAAAGGTTATGAAGGTGCAAAAGCCGATATTTGGTCTTGTGG 731
|| |||||| ||| | ||||||| || || || || |||| |||||||||||||||||
Sbjct 586 CCGGAGGTTCTTG-CTCGGAAAGGCTACGACGGAGCTAAAGTTGATATTTGGTCTTGTGG 644
Query 732 AGTGATCTTGTTTGTATTGATGGCTGG-TTATCTTCCATTTGATGACAAGAACAT-ATTG 789
|||||||||||| || || ||||| || || ||| || ||| ||||| ||| | || |
Sbjct 645 AGTGATCTTGTTCGTGTTAATGGCGGGGTT-TCTACCTTTTCATGACCGGAATGTTAT-G 702
Query 790 GTTATGTATACA-AAGATATATAAAGG-GCAGTTTAAGTGTCCTAAATGGTTTTCTCCTG 847
| |||||||| | ||||| |||||||| | | |||| |||||| | ||||||| | ||
Sbjct 703 GCTATGTATA-AGAAGATTTATAAAGGAG-ATTTTAGGTGTCCGAGATGGTTTCCGGTTG 760
Query 848 AGCTTG-CAAGGCTTGT-GACCCGGATGCTAGACACGAATCCAGATACCCGAATCACAAT 905
|| || | || |||| || || ||| | || || || || || | || | |||||
Sbjct 761 AGATTAACC-GG-TTGTTGATTCGAATGTTGGAGACTAAACCGGAAAGACGGTTTACAAT 818
Query 906 ACCGGAGATCATGAAG-CATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAATTCTATA 964
|||||||| ||| || | ||| |||||||||||||| || || ||| | || || |||
Sbjct 819 GCCGGAGATTATGGAGAC-TAGTTGGTTCAAGAAAGGTTTTAAGCATATTAAGTTTTATG 877
Query 965 TTGAAAACGAT-A--AG-TTATGTAGGGAGGATGATGACAATGATGAT-GA--CGATTCA 1017
||||| | ||| | || || |||| | | |||||| |||| ||| || ||||| |
Sbjct 878 TTGAAGATGATCATCAGCTT-TGTAATGTTGTTGATGATGATGA-GATCGAATCGATTGA 935
Query 1018 TCATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAA--GGA-GA-TGCAGAGT-TT- 1071
||| | | || || | || || || | ||| ||| ||| || | ||||| ||
Sbjct 936 --ATCGGT-T--TCGGGGAGGTCTTCTACGGTTTCTGAACCGGATGACTT-AGAGTCTTT 989
Query 1072 -GATATTA--A-AAGGGTTGATT-CAATGCCGAGACCCGCGAGTCTAAACGCATTT-GA- 1124
||| | | ||||| | || | ||||| |||||||||||| | || || ||| ||
Sbjct 990 TGATGGGAGGAGAAGGGC-GTTTTCGATGCCTAGACCCGCGAGTTTGAATGC-TTTCGAT 1047
Query 1125 C--AT--C-TTATCG--T--TCTCAGATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGG 1175
| || | || ||| | | | |||||||||||||||||||| || | | | ||||
Sbjct 1048 CTCATTTCGTTTTCGCCTGGTTTT-GATCTTTCGGGTTTGTTTGAGGATGATCGTGAAGG 1106
Query 1176 AGCAAGGTTTGTATCTGCTGCTCCTAT-GACAAAGATCATATCGAAATTGGAAGAGATTG 1234
| |||||||| |||| ||||||| | | | |||||||||| |||||||| || || |
Sbjct 1107 CTCTAGGTTTGTGTCTGGTGCTCCTGTTG-CTCAGATCATATCTAAATTGGAGGAAATCG 1165
Query 1235 CCAAAGAG-GTGAAATTTATGGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGT 1293
| ||| | |||| |||| |||| | ||||||||||| | ||||| || |||||||
Sbjct 1166 CGAAA-ATCGTGAGTTTTACGGTGCGAAAGAAGGATTGTAAAGTGAGTCTTGAAGGTTCA 1224
Query 1294 AGAGAAGGA-GCTAA-A--GGACCGTTGACAATTAGA-G-TCGAGATCTTTGAGCTGACG 1347
||||||||| | ||| | || || ||| ||||| | | | ||||| ||||| ||||
Sbjct 1225 AGAGAAGGAAG-TAAGAAAGGTCCATTGTCAATT-GCTGCT-GAGATATTTGAATTGACT 1281
Query 1348 CCATCTCTTG-TGGTGGTTGAAGTGAAGAAGAAAGGAGGAAATATAGAA-G-AGTATGAA 1404
||| || ||| | || |||||||| |||||||||||||| ||| | || | |||||||
Sbjct 1282 CCAGCT-TTGGTTGTTGTTGAAGTTAAGAAGAAAGGAGGTGATA-A-AATGGAGTATGAT 1338
Query 1405 GAGTTTTGCAACAAGGAA 1422
|||||||| || || |||
Sbjct 1339 GAGTTTTGTAATAAAGAA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5