BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34180.1 Length=1509 Score E Sequences producing significant alignments: (Bits) Value Ahg934014 jgi|Araly1|934014|scaffold_402002.1 2307 0.0 Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1 318 6e-86 > Ahg934014 jgi|Araly1|934014|scaffold_402002.1 Length=1558 Score = 2307 bits (1249), Expect = 0.0 Identities = 1433/1521 (94%), Gaps = 15/1521 (1%) Strand=Plus/Plus Query 1 ATGGCTCAAGTACTATCTACACCGTTGGCCATCCCCGGCCCAACGCCAATACAATTCATG 60 |||||||||||||||||| |||| |||| ||| |||||||||||||||| ||||||||| Sbjct 21 ATGGCTCAAGTACTATCTCCACCAATGGCTATCACCGGCCCAACGCCAATGCAATTCATG 80 Query 61 GCGGGTCTTCTTGCTCGAATCGTTACAAAAAATACGAACAAAGAGACCAGTACTCCAGAG 120 ||||||||||| | ||||||| |||| ||| | |||| |||||||| ||||||||||||| Sbjct 81 GCGGGTCTTCTCGGTCGAATCATTACTAAAGACACGAGCAAAGAGATCAGTACTCCAGAG 140 Query 121 AGCCCGAGGAGTCCGCGGACTCCACAAGGCTCTATTCTCATGGACAAGTACGAAATAGGA 180 |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| Sbjct 141 AGCCCGAGGAGTCCGCAGACTTCACAAGGCTCTATTCTCATGGACAAGTACGAGCTAGGA 200 Query 181 AAGCTTCTTGGCCACGGAAGCTTCGCTAAGGTCTATTTAG-CACGGAACATTCATTCTGG 239 || ||||| || ||||||||||||||||| |||||| ||| || ||||||| |||| || Sbjct 201 AAACTTCTCGGTCACGGAAGCTTCGCTAAAGTCTATCTAGCCA-AGAACATTAATTCCGG 259 Query 240 CGAGGATGTTGCCATCAAAGTCATTGACAAGGAGAAGATAGTGAAGAGTGGATTGGCCGG 299 ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 260 CGAGGATGTTGCCATCAAAGTCATTGACAAGGAGAAGATCGTGAAGAGCGGAATGGCCGG 319 Query 300 TCATATTAAACGGGAGATTTCAATCCTCCGCCGTGTCCGCCACCCTTACATTGTACACCT 359 |||||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct 320 TCATATAAAACGGGAGATCTCTATCCTCCGACGTGTCCGCCACCCTTACATTGTCCACCT 379 Query 360 ACTCGAGGTTATGGCTACGAAGACAAAGATTTACATTGTGATGGAGTACGTTCGAGGCGG 419 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 380 ACTCGAGGTTATGGCTACGAAGACAAAGATTTACATTGTGATGGAGTACGTACGAGGCGG 439 Query 420 AGAGCTTTATAATACGGTGGCTAGAGGACGGCTTCGAGAAGGAACCGCGAGGAGATATTT 479 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 440 AGAGCTTTATAATACGGTGGCTAGAGGCCGGCTTCGAGAAGGAACCGCGAGGAGATATTT 499 Query 480 CCAGCAGTTGATCTCATCCGTTGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCT 539 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 CCAGCAGTTGATCTCAGCCGTTGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCT 559 Query 540 CAAGCTTGAGAATCTGCTTTTGGACGACAAGGGGAACGTGAAAGTCTCTGACTTTGGGCT 599 ||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||| Sbjct 560 CAAGCTTGAGAATCTGCTTTTGGACGATATGGGAAACGTTAAAGTCTCTGACTTTGGGCT 619 Query 600 CAGCGTTGTCTCGGAGCAGCTCAAGCAAGAAGGAATCTGTCAAACGTTTTGCGGGACACC 659 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 620 CAGCGTTGTCTCGGAGCAGCTCAAGCAAGACGGAATCTGTCAAACGTTTTGCGGGACGCC 679 Query 660 AGCTTATTTGGCGCCTGAGGTTTTGACAAGGAAAGGTTATGAAGGTGCAAAAGCCGATAT 719 |||||| |||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 680 GGCTTATCTGGCGCCTGAGGTTTTGACAAGGAAAGGGTATGATGGTGCCAAGGCCGATAT 739 Query 720 TTGGTCTTGTGGAGTGATCTTGTTTGTATTGATGGCTGGTTATCTTCCATTTGATGACAA 779 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 740 TTGGTCTTGTGGAGTGATCTTGTTTGTGTTGATGGCTGGTTATCTTCCATTTGATGACAA 799 Query 780 GAACATATTGGTTATGTATACA-AAGATATATAAAGGGCAGTTTAAGTGTCCTAAATGGT 838 |||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||| Sbjct 800 GAACATATTGGTTATGTACA-AGAAGATATATAAAGGGCAGTTTAAATGTCCTAAATGGT 858 Query 839 TTTCTCCTGAGCTTGCAAGGCTTGTGACCCGGATGCTAGACACGAATCCAGATACCCGAA 898 || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 859 TTGCTCCTGAGCTCGCAAGGCTTGTGACCCGGATGCTAGACACGAATCCGGATACCCGAA 918 Query 899 TCACAATACCGGAGATCATGAAGCATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAAT 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919 TCACAATACCGGAGATCATGAAGCATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAAT 978 Query 959 TCTATATTGAAAACGATAAGTTATGTAGGGAGGATGATGACAATGATGATGACGATTCAT 1018 ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 979 TCTATATCGAAAACGATAAGTTGTGTAGGGAGGATGATGACAATGATGAAGACGATTCTT 1038 Query 1019 CATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAAGGAGATGCAGAGTTTGATATTA 1078 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1039 CATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAAGGAGATGTAGAGTTTGATATTA 1098 Query 1079 AAAGGGTTGATTCAATGCCGAGACCCGCGAGTCTAAACGCATTTGACATCTTATCGTTCT 1138 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1099 AAAGGGTTGATTCAATGCCGAGACCCGCCAGTCTAAACGCATTTGACATCATATCGTTCT 1158 Query 1139 C----AG-----ATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGGAGCAAGGTTTGTAT 1189 | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1159 CTTCGAGTTTGGATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGGAGCAAGGTTTGTAT 1218 Query 1190 CTGCTGCTCCTATGACAAAGATCATATCGAAATTGGAAGAGATTGCCAAAGAGGTGAAA- 1248 ||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 1219 CTGCTGCTCCTGTGAAAAAGATCATATCGAAACTGGAAGAGATTGCGAAAGAGGT-AAAC 1277 Query 1249 TTTATGGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGTAGAGAAGGAGCTAAA 1308 |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1278 TTTACAGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGTAGAGAAGGTGCTAAA 1337 Query 1309 GGACCGTTGACAATTAGAGTCGAGATCTTTGAGCTGACGCCATCTCTTGTGGTGGTTGAA 1368 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1338 GGACCGTTGACAATTAGAGTTGAGATCTTTGAGCTGACGCCATCTCTTGTGGTGGTTGAA 1397 Query 1369 GTGAAGAAGAAAGGAGGAAATATAGAAGAGTATGAAGAGTTTTGCAACAAGGAACTTAGA 1428 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1398 GTGAAGAAGAAAGGAGGGAATATAGAAGAGTATGAAGAGTTTTGCAACAAGGAACTTAGA 1457 Query 1429 CCACAGCTGGAGAAACTGATGCATTACCAAGCAGATGAAGTTGAAGAAGTAATGTGTTTG 1488 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1458 CCACAGCTGGAGAAACTGATGCATTACCAAGCAGATGAAGTTGAAGAAGCAATGTGTTTG 1517 Query 1489 CCACCTGAAATTGAACAGTGA 1509 ||||||||||||||| ||||| Sbjct 1518 CCACCTGAAATTGAAAAGTGA 1538 > Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1 Length=1452 Score = 318 bits (172), Expect = 6e-86 Identities = 966/1338 (72%), Gaps = 100/1338 (7%) Strand=Plus/Plus Query 144 ACAAGGCTCT-ATTCTCATGGACAAGTACGAAATAGGAAAGCTTCTTGGCCACGGAAGCT 202 |||| ||||| | || | ||| ||| || ||||| || | |||||||||||| |||| || Sbjct 60 ACAA-GCTCTGA-TC-CTTGG-CAAATATGAAATGGGTAGGCTTCTTGGCCATGGAACCT 115 Query 203 TCGCTAAGGTCTATTTAGCACGGAACATTCATTCTGGCG-AGGATGTTGCCATCAAAGTC 261 | ||||| || ||| | ||| | ||| ||| ||||| | | | || |||||||| || Sbjct 116 TTGCTAAAGTTTATCTCGCAAGAAACGCTCAATCTGGAGAAAG-CGTAGCCATCAAGGTA 174 Query 262 ATTGACAAGGAG-AAGATAGTGAAGA-GTGGATTGGCCGGTCATATTAAACGGGAGATTT 319 || ||||| ||| ||| | | || | ||| || || || || ||||| ||||| | Sbjct 175 ATAGACAAAGAGAAAG-TTCTCAA-ATCTGGTTTAATCGCACACATCAAACGCGAGATCT 232 Query 320 CAATCCTCCGCCGTGTCCGCCACCCTTACATTGTACACCTACTCGAGGTTATGGCTACGA 379 | ||| | || ||||| || || || |||| || || ||| |||| || |||||||||| Sbjct 233 CGATCTTGCGTCGTGTTCGTCATCCAAACATCGTTCAGCTATTCGAAGTCATGGCTACGA 292 Query 380 AGACAAAGATTTACATT-GTGATGGAGTACGTTCGAGGCGGAGAGCTT-TAT-AATACGG 436 || | ||||| || || || ||||| || ||| ||| || || || | | || | || Sbjct 293 AGTCCAAGATCTA-TTTCGTAATGGAATATGTTAAAGGAGGTGA-ATTGT-TCAACAAGG 349 Query 437 TGGCTAGAGGACGGCTT-CGAGAAGGAACCGCGA-GGAGATATTTCCAGCAGTTGATCTC 494 | |||| |||| || || ||||| || || | | |||||||| || || |||||||| Sbjct 350 TAGCTAAAGGAAGG-TTAAAAGAAGAAATGGC-ACGTAGATATTTTCAACAATTGATCTC 407 Query 495 ATCCGT-TGCTTTCTGCCACAGCCGCGGTGTTTACCACCGCGATCTCAAGCTTGAGAATC 553 |||| || ||| || ||| ||| |||||||| || || ||| | || | ||||||| Sbjct 408 CGCCGTATGGTTT-TGTCACTTCCGTGGTGTTTATCATCGAGATTTGAAACCGGAGAATC 466 Query 554 TGCTTTTGGACGACAAGGGGAACGTGAAAGTCTCTGACTTTGGGCTCAGCGTTGTCTCGG 613 | ||||| ||||| || || ||| | ||||||||||| ||||| || || | ||| || | Sbjct 467 TTCTTTTAGACGAAAATGGAAACCTAAAAGTCTCTGATTTTGGTCTTAGTGCTGTTTCTG 526 Query 614 AGCAG-CTCAAGCAAGAAGGAATCTGTCAAACGTTTTGCGGGACACCAGCTTATTTGGCG 672 | ||| || | ||||| || | | ||| || ||||| ||||| || ||||| |||| Sbjct 527 ATCAGATTCGA-CAAGATGGGTTATTTCATACTTTTTGTGGGACCCCTGCTTACGTGGCA 585 Query 673 CCTGAGGTT-TTGACAAGGAAAGGTTATGAAGGTGCAAAAGCCGATATTTGGTCTTGTGG 731 || |||||| ||| | ||||||| || || || || |||| ||||||||||||||||| Sbjct 586 CCGGAGGTTCTTG-CTCGGAAAGGCTACGACGGAGCTAAAGTTGATATTTGGTCTTGTGG 644 Query 732 AGTGATCTTGTTTGTATTGATGGCTGG-TTATCTTCCATTTGATGACAAGAACAT-ATTG 789 |||||||||||| || || ||||| || || ||| || ||| ||||| ||| | || | Sbjct 645 AGTGATCTTGTTCGTGTTAATGGCGGGGTT-TCTACCTTTTCATGACCGGAATGTTAT-G 702 Query 790 GTTATGTATACA-AAGATATATAAAGG-GCAGTTTAAGTGTCCTAAATGGTTTTCTCCTG 847 | |||||||| | ||||| |||||||| | | |||| |||||| | ||||||| | || Sbjct 703 GCTATGTATA-AGAAGATTTATAAAGGAG-ATTTTAGGTGTCCGAGATGGTTTCCGGTTG 760 Query 848 AGCTTG-CAAGGCTTGT-GACCCGGATGCTAGACACGAATCCAGATACCCGAATCACAAT 905 || || | || |||| || || ||| | || || || || || | || | ||||| Sbjct 761 AGATTAACC-GG-TTGTTGATTCGAATGTTGGAGACTAAACCGGAAAGACGGTTTACAAT 818 Query 906 ACCGGAGATCATGAAG-CATAGATGGTTCAAGAAAGGGTTCAAACATGTCAAATTCTATA 964 |||||||| ||| || | ||| |||||||||||||| || || ||| | || || ||| Sbjct 819 GCCGGAGATTATGGAGAC-TAGTTGGTTCAAGAAAGGTTTTAAGCATATTAAGTTTTATG 877 Query 965 TTGAAAACGAT-A--AG-TTATGTAGGGAGGATGATGACAATGATGAT-GA--CGATTCA 1017 ||||| | ||| | || || |||| | | |||||| |||| ||| || ||||| | Sbjct 878 TTGAAGATGATCATCAGCTT-TGTAATGTTGTTGATGATGATGA-GATCGAATCGATTGA 935 Query 1018 TCATCATTGTCATCAGGCCGATCATCGACTGCTTCAGAA--GGA-GA-TGCAGAGT-TT- 1071 ||| | | || || | || || || | ||| ||| ||| || | ||||| || Sbjct 936 --ATCGGT-T--TCGGGGAGGTCTTCTACGGTTTCTGAACCGGATGACTT-AGAGTCTTT 989 Query 1072 -GATATTA--A-AAGGGTTGATT-CAATGCCGAGACCCGCGAGTCTAAACGCATTT-GA- 1124 ||| | | ||||| | || | ||||| |||||||||||| | || || ||| || Sbjct 990 TGATGGGAGGAGAAGGGC-GTTTTCGATGCCTAGACCCGCGAGTTTGAATGC-TTTCGAT 1047 Query 1125 C--AT--C-TTATCG--T--TCTCAGATCTTTCGGGTTTGTTTGAAGAAGGTGGACAAGG 1175 | || | || ||| | | | |||||||||||||||||||| || | | | |||| Sbjct 1048 CTCATTTCGTTTTCGCCTGGTTTT-GATCTTTCGGGTTTGTTTGAGGATGATCGTGAAGG 1106 Query 1176 AGCAAGGTTTGTATCTGCTGCTCCTAT-GACAAAGATCATATCGAAATTGGAAGAGATTG 1234 | |||||||| |||| ||||||| | | | |||||||||| |||||||| || || | Sbjct 1107 CTCTAGGTTTGTGTCTGGTGCTCCTGTTG-CTCAGATCATATCTAAATTGGAGGAAATCG 1165 Query 1235 CCAAAGAG-GTGAAATTTATGGTGAGGAAGAAGGATTGGAGCGTGAGGCTAGAAGGTTGT 1293 | ||| | |||| |||| |||| | ||||||||||| | ||||| || ||||||| Sbjct 1166 CGAAA-ATCGTGAGTTTTACGGTGCGAAAGAAGGATTGTAAAGTGAGTCTTGAAGGTTCA 1224 Query 1294 AGAGAAGGA-GCTAA-A--GGACCGTTGACAATTAGA-G-TCGAGATCTTTGAGCTGACG 1347 ||||||||| | ||| | || || ||| ||||| | | | ||||| ||||| |||| Sbjct 1225 AGAGAAGGAAG-TAAGAAAGGTCCATTGTCAATT-GCTGCT-GAGATATTTGAATTGACT 1281 Query 1348 CCATCTCTTG-TGGTGGTTGAAGTGAAGAAGAAAGGAGGAAATATAGAA-G-AGTATGAA 1404 ||| || ||| | || |||||||| |||||||||||||| ||| | || | ||||||| Sbjct 1282 CCAGCT-TTGGTTGTTGTTGAAGTTAAGAAGAAAGGAGGTGATA-A-AATGGAGTATGAT 1338 Query 1405 GAGTTTTGCAACAAGGAA 1422 |||||||| || || ||| Sbjct 1339 GAGTTTTGTAATAAAGAA 1356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56487833335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5