BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34190.1
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482362 jgi|Araly1|482362|fgenesh2_kg.4__1422__AT2G34190.1 2959 0.0
> Ahg482362 jgi|Araly1|482362|fgenesh2_kg.4__1422__AT2G34190.1
Length=1868
Score = 2959 bits (1602), Expect = 0.0
Identities = 1769/1850 (96%), Gaps = 9/1850 (0%)
Strand=Plus/Plus
Query 1 ACTACCAAAAAGCTTTCTTCTAACTCAGCTGCAACTTCGAAAAAGAGAAGC-TTTTTCGC 59
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ACTACCAAAAAGCTCTCTTCTAACTCAGCTGCAACTTCGAAAAAGAGAAGCTTTTTTCAC 60
Query 60 TTTGCCTTGTCCTCA----TTTCTCTTTCACACAACTTTTCTATCTTATTTAAAACCACT 115
||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||||
Sbjct 61 TTTGCCTTGTCCTCATTTTTTTCTCTTTCACACACCTTTTCTTTTTTATTT-AAACCACT 119
Query 116 CTGTTCTTGTTTTCTCAGTCATTCCTCTGATTCAATCAGATTCTTTTAGTTTTCCTGATT 175
| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 120 CAGTTCTTGTTTTCTCAGTCATTTCTCTGGTTCAATCAGATCCTTTTAGTTTTCCTGATT 179
Query 176 CTTTAGCAGATTCATGAGCTCATAAGAAGAAGATTTGTTGTTGAGTGTTAACCCAGAAAG 235
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 180 CTTTAGCTGATTCATGAGCTCATAAGAAGAAGATTTG-TGTTGAGTGTTGACCCAGAAAG 238
Query 236 AAAAAGGAAGACTTTAGAATCATGGATCTTGTAAAGCCAGAGGAGATAAGTCACCCACCA 295
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 AAAAAGAAAGACTCTAGAATCATGGATCCTGTAAAGCCAGAGGAGATAAGTCACCCACCA 298
Query 296 ATGGATCAGCTTCAGGGTTTAGAGTACTGTATTGACTCAAACCCTCCATGGGGAGAAGCT 355
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 ATGGATCAGCTTCAGGGTTTAGAGTATTGTATTGACTCAAACCCTCCATGGGGAGAAGCC 358
Query 356 ATAGCTTTAGGTTTCGAGCATTACATTCTGGCTTTAGGAACTGCAGTGATGATACCTTCA 415
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 ATAGCTTTAGGTTTCGAGCATTACATTTTGGCTTTAGGAACTGCAGTGATGATACCTTCA 418
Query 416 ATTCTTGTTCCTATGATGGGTGGAGATGATGGTGATAAAGTGAGAGTTGTTCAGACACTA 475
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTCTTATTCCTATGATGGGTGGAGATGATGGTGATAAAGTGAGAGTTGTTCAGACACTA 478
Query 476 CTGTTCCTTCAAGGTGTTAACACTCTTCTTCAAACATTATTTGGAACTCGTCTTCCAACT 535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGTTTCTTCAAGGTGTTAACACTCTTCTTCAAACATTATTTGGAACTCGTCTTCCAACT 538
Query 536 GTCATTGGAGGCTCATATGCATTCATGGTTCCAATCATTTCAATCATCCATGACTCTTCT 595
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 GTCATTGGAGGCTCTTATGCATTCATGGTTCCCATCATTTCAATCATCCATGACTCTTCT 598
Query 596 TTGACCCGTATCGAAGATCCACAATTGAGATTTCTAAGTACAATGAGAGCGGTACAAGGC 655
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 TTGACCCGTATCGAAGATCCACAATTGAGATTTCTAAGTACAATGAGAGCAGTACAAGGC 658
Query 656 GCGATCATAGTTGCATCCAGCGTTCAAATTATCCTCGGTTTCAGCCAAATGTGGGCTATC 715
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GCGATCATCGTTGCATCCAGCCTTCAAATCATCCTCGGTTTCAGCCAAATGTGGGCTATC 718
Query 716 TGTTCAAGATTCTTTAGTCCTATTGGTATGGTTCCTGTTATTGCATTAACAGGTTTTGGA 775
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 TGTTCAAGATTCTTTAGTCCTATTGGTATGGTTCCGGTTATTGCATTAACAGGTTTTGGA 778
Query 776 CTCTTCAACAGAGGATTCCCAGTGGTGGGTAATTGTGTTGAGATAGGACTCCCCATGCTT 835
|||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||
Sbjct 779 CTCTTCAACAGAGGATTCCCAGTGGTTGGTAATTGTATTGAGGTAGGACTTCCCATGCTT 838
Query 836 ATTCTCTTTGTCATCTTCTCTCAGTATCTGAAGAACTTTCAGTTCAGGCAATTCCCAGTA 895
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 ATCCTCTTTGTCATCTTCTCTCAGTATCTGAAGAGCTTTCAGTTCAGGCAATTCCCAGTA 898
Query 896 GTGGAGAGATTTGCTCTTATTATAGCGCTTATCATCGTGTGGGCTTACGCGCATGTCTTG 955
|| ||||| || ||||||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 899 GTCGAGAGGTTCGCTCTTATTATAGCGCTAATCGTGGTGTGGGCTTACGCACATGTCTTG 958
Query 956 ACCGCCAGTGGGGCTTACAAACACCGACCACACCAGACACAATTAAACTGCAGAACGGAT 1015
|| || |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 959 ACAGCGAGTGGGGCTTACAAACACCGACCACATCAGACACAAGTAAACTGCAGAACCGAT 1018
Query 1016 ATGTCTAACCTCATTTCATCTGCTCCTTGGATCAAGATTCCTTATCCACTTCAATGGGGA 1075
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGTCTAACCTCATTTCTTCTGCTCCTTGGATCAAGATTCCTTATCCACTTCAATGGGGA 1078
Query 1076 GCACCTAGCTTTGATGCTGGTCATGCTTTTGCTATGATGGCCGCTGTTTTAGTCTCACTC 1135
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1079 GCACCTAGCTTTGATGCTGGTCATGCTTTCGCTATGATGGCCGCTGTTCTAGTCTCACTC 1138
Query 1136 ATTGAGTCAACTGGAGCTTTCAAAGCTGCTGCACGACTGGCTAGCGCTACGCCTCCTCCA 1195
|||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1139 ATTGAGTCTACTGGAGCTTTCAAAGCTGCTGCACGACTGGCGAGCGCCACACCTCCTCCA 1198
Query 1196 CCTCATGTTCTTAGCCGTGGAATAGGCTGGCAAGGCATTGGGATCCTCTTAAACGGTTTA 1255
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCTCATGTTCTTAGTCGCGGAATTGGCTGGCAAGGCATTGGGATCCTCTTAAACGGTTTA 1258
Query 1256 TTTGGAACACTAAGCGGTTCAAGTGTCTCTGTAGAGAACATTGGATTACTAGGAAGCACC 1315
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 TTTGGAACGCTAAGCGGTTCAAGTGTCTCTATAGAGAACATTGGATTACTAGGAAGCACC 1318
Query 1316 AGAGTTGGAAGCCGCAGAGTTATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATG 1375
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGAGTTGGAAGCCGCAGAGTCATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATG 1378
Query 1376 CTAGGCAAATTCGGGGCATTGTTCGCTTCAATACCTTTCACGATATTTGCAGCTGTGTAC 1435
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1379 CTAGGCAAATTCGGGGCATTGTTCGCTTCAATACCTTTCACAATATTTGCAGCCGTGTAC 1438
Query 1436 TGCGTCTTGTTTGGTCTTGTTGCTTCAGTTGGACTCTCTTTTCTGCAATTCACAAACATG 1495
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1439 TGTGTCTTGTTTGGTCTTGTTGCTTCAGTTGGGCTCTCTTTTCTGCAATTCACAAACATG 1498
Query 1496 AACTCTCTGAGAAATCTCTTCATCGTCGGTGTGTCTCTCTTCTTAGGATTATCGATCCCC 1555
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1499 AACTCCCTGAGAAATCTCTTCATCGTCGGTGTGTCTCTCTTCTTAGGATTATCGATTCCC 1558
Query 1556 GAATACTTCAGAGATTTCAGCATGAAAGCATTACACGGCCCAGCTCACACCAATGCTGGT 1615
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1559 GAATACTTCAGAGACTTCAGCATGAAAGCATTACACGGTCCAGCTCACACCAATGCTGGT 1618
Query 1616 TGGTTCAATGATTTCTTGAACACAATCTTCTTATCTTCACCAATGGTCGCACTGATGGTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGGTTCAATGATTTCTTGAACACAATCTTCTTATCTTCACCAATGGTCGCACTGATGGTG 1678
Query 1676 GCAGTGTTCTTGGACAACACTCTGGACTATAAAGAGACCGCGAGAGA-CAGAGGATTGCC 1734
||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1679 GCAGTGTTCTTGGACAATACTCTGGACTATAAAGAGACCGCAAGAGATC-GAGGATTGCC 1737
Query 1735 TTGGTGGGCTAAGTTCAGAACTTTCAAAGGAGATAGCAGGAATGAGGAATTCTACACTCT 1794
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1738 TTGGTGGGCTAAGTTCAGAACTTTCAAAGGAGACAGCAGGAATGAGGAATTCTACACTCT 1797
Query 1795 CCCTTTCAACCTCAACCGTTTCTTCCCTCCTTCATAGAAAGTTTTACTCT 1844
||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1798 CCCTTTCAACCTCAATCGTTTTTTCCCTCCTTCATAGAAAGTTTTACTCT 1847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5