BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34200.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934016 jgi|Araly1|934016|scaffold_402004.1 1000 0.0
> Ahg934016 jgi|Araly1|934016|scaffold_402004.1
Length=697
Score = 1000 bits (541), Expect = 0.0
Identities = 623/661 (94%), Gaps = 11/661 (2%)
Strand=Plus/Plus
Query 206 TGATGTTAAGGGTCAGACCAGTGACTCTGTATCAAAAAAGGTGTTGATTGAGGAAGAGGA 265
|||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 44 TGATGTCAAGGGTCAGACTAGTGACTCTGTTTCAAAAAAGGTGTTGATTGAAGAAGAGGA 103
Query 266 AGATGTAAAGAAACCACAACAGGGAAAAGAAAATGATTCAAGAATGGCCAAAGATGTTGT 325
|||||| ||||||||||||| ||||||||||||||||||||| |||||| | | |
Sbjct 104 AGATGTGAAGAAACCACAAC------AAGAAAATGATTCAAGAATGGACAAAGACGGTAT 157
Query 326 TAGTTGCAGTAGTAACATTTCAGCTCATGTTGTTCATGAGGAAGTTGCGGATAATGTTAC 385
||| ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 158 TAGCTGCAGTAGTAACATTGCAGCTCATGCTGTTCATGAGGAAGTTGGGGATAATGTTAG 217
Query 386 TGCGGTAAGCTGCAACGAGGCAGAGAGTGATA-TATCGAAAGCAAAGGCGAAGGAGTTCC 444
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 218 TGCGGTAAGCTGCAACGAGGCAGAGAGTGATACT-TCGAAAGCAAAGGCGAAGGAGTTCC 276
Query 445 ACACTATTGATTTGAGTGGTGTAGGAGAAAGAATCTGTAGGATTTGTCATTTTGGTTCTG 504
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 277 ACACTATTGATTTGAGTGGTGGAGGAGAAAGAATCTGTAGGATTTGTCATTTTGGTTCTG 336
Query 505 ATCAATCACCTGAGGCTTCTGGTGATGATAAGTCAGTAAGTCCGGAGTTGATTGAGATTG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATCAATCACCTGAGGCTTCTGGTGATGATAAGTCAGTAAGTCCGGAGTTGATTGAGATTG 396
Query 565 GTTGCAAATGTAAAAACGAGCTTGGCCTTGCACATTTCCATTGCGCTGAAGCCTGGTTCA 624
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 397 GTTGCAAATGCAAAAACGAGCTTGGCCTTGCACATTTCCACTGCGCAGAAGCTTGGTTCA 456
Query 625 AGTTAAGAGGAAACAGTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAA 684
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGTTAAGAGGGAACAGTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAA 516
Query 685 GGTTGATGGAGGATTGGAGCGGCGAAAGAGACAATACATTGGATGGGAGAAGAAGACGAG 744
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 517 GGTTGATGGAGGATTGGAGCGGCGAAAGGGACAATACATTGGAAGAGAGAAGAAGACGAG 576
Query 745 GAAGAGGACAATCTTGCTGCATCTTTATGGTTTTTCTGCTCACTATCCT-TTTGCTTCAT 803
||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 577 GAAGAGGACAATCTTTCTGCATCTTCATGGTTTTTCTGCTCACTATC-TATTTGCTTCAT 635
Query 804 TGGTTTTTCAAAAAGATTAGTGGTTACTACCAAAACACTTGAATAT-GTATATCTGTTGG 862
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 636 TGGTTTTTCAAAAAGATTAGCGGTTACTACCAAAACACTTGAATAAAGTATATCTGTTGG 695
Query 863 T 863
|
Sbjct 696 T 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5