BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34220.1
Length=2973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934018 jgi|Araly1|934018|scaffold_402006.1 1585 0.0
Ahg482366 jgi|Araly1|482366|fgenesh2_kg.4__1426__AT2G34230.2 1585 0.0
Ahg934020 jgi|Araly1|934020|scaffold_402008.1 1543 0.0
> Ahg934018 jgi|Araly1|934018|scaffold_402006.1
Length=2222
Score = 1585 bits (858), Expect = 0.0
Identities = 1043/1133 (92%), Gaps = 9/1133 (1%)
Strand=Plus/Plus
Query 1569 AGTTTGCCGAGGTTCTAAAATCTTCTTGTGCCAAGGAGAATTGTACTCTTTCATGTACCC 1628
||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1019 AGTTTTCCGAGGTTCTTAAATCTTCTTGTGCCAAGGAGAATCGTACTCTTTCATGTGCCC 1078
Query 1629 TTTGGGACTGGTTGAG-AGATTACACAGAAGAGAATCTGGAACTACCTGGAGTTCCTGGG 1687
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 TTTGGGACTGGTTG-GTAGATTACACAGAAGAGAATCTGGATCTACCTGGAGTTCCTGGG 1137
Query 1688 ATCTATCTTGATCAATGTTGCTTCTTTAAGAACCCTCAATGCATCTGCTTCTTAGATCTT 1747
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCTATCTTGATAAATGTAGCTTCTTTAAGAACCCTCAATGCATCTGCTTCTTAGATCTT 1197
Query 1748 AAGCACCTTGAACACATCCTCAAGTATTTTAGACAGCTCACCACAGATGTTCGCGCGAGT 1807
||||||||| ||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 1198 AAGCACCTTAAACACATCCTCAAATATTTTAGACAGCTCACCACTGATGTTCGAGCAAGT 1257
Query 1808 TTAGTTCCAAAAGTAGTGAATCAGTTTTGGGAAAATTCCCAGGTCAAGGAAAGAATCGAC 1867
|| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1258 TTGGTTTCAAAAGTAGTGAATCAGTTCTGGGAAGATTCCCAGGTCAAGGAAAGAATCGAT 1317
Query 1868 CTTGAGGGA-GTAGCTACTTATAATCTGCTTCTGGACAAGAGACTGCTGTATGAAGAAGA 1926
||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1318 CTTGAGGGACTTA-CTACTTATAATCTACTTCTGGACAAGAGACTGTTGTATGAAGAAGA 1376
Query 1927 GCTTGAATCGGATAAGATAGGGACAGTAGAGCATTATAAATCTACAGGGATTTTTGAGGA 1986
| ||||||||||||| |||||||||||||||||||||||||| || || || | ||||||
Sbjct 1377 GATTGAATCGGATAATATAGGGACAGTAGAGCATTATAAATCCACTGGAATCTATGAGGA 1436
Query 1987 TGTAATGCCTAAGGGTGATAAAATCGTCTCTTGGATTCTTGACTGCCCAGAAATCGATCG 2046
||| ||||||||||||||||| || |||||||||||| |||||||||||||||||| ||
Sbjct 1437 TGTGATGCCTAAGGGTGATAAGATTGTCTCTTGGATTTTTGACTGCCCAGAAATCGGTCA 1496
Query 2047 GGAATTTGTGTCTCAAATGGCAAACGGCGTACACAATAGTAAGCTATGGTTAGCAGCTTT 2106
||| |||||||||||||||||||| || ||||||||| || |||||||||||||||||||
Sbjct 1497 GGACTTTGTGTCTCAAATGGCAAAGGGTGTACACAATCGTGAGCTATGGTTAGCAGCTTT 1556
Query 2107 GAGAATAGTACGGTGTGTGATTAGGAAAAAGGAAAGCTACTATGATAAGAGACGGAAGAT 2166
||||||||||||||||||| ||||||||| |||||| |||||||||||||||| | |||
Sbjct 1557 GAGAATAGTACGGTGTGTGGTTAGGAAAATGGAAAGGTACTATGATAAGAGACACAGGAT 1616
Query 2167 GCTAACCTATGAGAAGATGTTGGGTGAGGCTGAGACGATTTGTGACAGAGAAGACACTAG 2226
| |||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||
Sbjct 1617 GGTAACCTATGAGAAGATGTTGAATGAGGCTAAGACCATTTGTGACAGAGAAGACTCTAG 1676
Query 2227 GAAGAATGTTAATCAGCGGAGCACATATGAGTCTGCACTTCGAATGAAATGTGAGGATCT 2286
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1677 GAAGAATGAAAATCAGCGGAGCACATATGAGTCTGTGCTTCGAATGAAATGTGAGGAGCT 1736
Query 2287 TGTAGGTAAGCAAGATGATGATACAAAATGTTTCTTGAGTGTTGTAAGAGATGTTTTTGA 2346
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1737 TGTAGGTAAGCAAGATGATGATACAAAATGTTTCTTGACTGTTGTAAGAGATGTTTTTCA 1796
Query 2347 AAGACAAAGCTCTCCGAGCTTTGAAGTATTCGAAGATAA-GA--AGTGTATATCCGAACT 2403
|||| |||||||||| || ||||||||||| |||||||| || ||||||||||| |||
Sbjct 1797 AAGAAAAAGCTCTCCAAGTTTTGAAGTATTAGAAGATAAGGAGGAGTGTATATCCAAACG 1856
Query 2404 CTCTTCTACTGTCCCGAATGATGATGTGaaaaaaaGTCTGTTAACGCTAAGGAAATCACT 2463
|||| |||||||||| ||||||||||| || |||||||||| ||| ||| || ||| ||
Sbjct 1857 CTCTACTACTGTCCCAAATGATGATGTTAAGAAAAGTCTGTCGACGTTAAAGACATCGCT 1916
Query 2464 GAAAGAGAAGTTCCCTTTGATTGATTCAAAGATTTTGCAGAACAAATCTACGTACGAAAA 2523
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||
Sbjct 1917 GAAAGAGAAGTTCCCTTTGATTGATTCAAAGATTTTGCGGAACAAGTCTACGTACAAAAA 1976
Query 2524 GCTAATAGATGTATTCCCGAAGCTATCAGCAGTTGAGTATCGCTTGGTGGTCCTTCCATT 2583
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1977 GCTAATAGATGTATTCCCAAAGCTATCAGCAGTTGAGTATCGGTTGGTGGTCCTTCCATT 2036
Query 2584 CGTGAAGAAGTTCTTACAGGATAAACTGAAGAAAATGATGAAAACAAACAGCAGTTCAGT 2643
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2037 CGTGAAGAAGTTCTTACAGGATAAACTGAAGAAAATGATGAAAACAAATAGCAGTTCAGT 2096
Query 2644 TGCTGCAGGAGATTCTGCTGAACG-GAAACCTAAGAAGAGACATCTTTGAAAT 2695
|||||||||||||||||||||||| ||| | ||||||||||||||||| ||||
Sbjct 2097 TGCTGCAGGAGATTCTGCTGAACGAGAA-CGTAAGAAGAGACATCTTTCAAAT 2148
Score = 1048 bits (567), Expect = 0.0
Identities = 889/1037 (86%), Gaps = 52/1037 (5%)
Strand=Plus/Plus
Query 519 TGACT-CCCTTGGATACGATGATGATGAAGAGTACA-GACGAAAGT------G--AA-AC 567
||||| |||| || ||||||||||| ||||||| || | | ||||| | || ||
Sbjct 4 TGACTCCCCTGGGGTACGATGATGACGAAGAGTTCAGGGC-AAAGTGACGACGAAAACAC 62
Query 568 AAAATGGAAGATCGA-CGATGCAGCCGAA-CT--TGCTAGAGACTTCTGGCTCGAACGTG 623
|||| | |||||| | |||||||||| || | |||||||||||||||| ||||||||
Sbjct 63 AAAAAGCAAGATC-AGCGATGCAGCCAAAGTTGCTGCTAGAGACTTCTGGGTCGAACGTA 121
Query 624 ACGGCATTTCG-GCTTTGAAATTAACAGAGAAAACGATTTCTGATCATGGGAATCACGAA 682
|| || ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 122 ACCGC-TTTCGAGCTTTGGAATTAACAGAGAAAACGATTTCTGATCATGGGAATCATGAA 180
Query 683 AAGTGCTCTAGTCACCACGAACTGCAAGGTGATATCTTCTATGCCCAAGCGAAGAAAACA 742
||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 181 AAGTGCTTTAGTCACCACGAACTGCAAGGTGATATCTTCTATGACCAAGCGATCAATACA 240
Query 743 GATGACACCGACCTCAAATGCT-TATACTTGTTTGCTTCTGTCGATGCGTATTCAATGGC 801
|||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 241 GATGACACCGACCTCAAATG-TGTATACTTGTTTGCTTCTGTCGATGCTTATTCAATGGC 299
Query 802 TACTCTTCTGTCTCCTAACGCTTTGACTTTGAGGTCCTTTCGTGGCTATGCTCGTTCGCT 861
||||||||||| |||| | | || | |||| ||||||| |||||||||| |||| |
Sbjct 300 TACTCTTCTGTATCCTTA--C---GA-TATGAGCTCCTTTCCCGGCTATGCTCATTCGAT 353
Query 862 AATCAAGTTGGGTGATCAGCTTCGGATAAACAAGTTTTATGAGAAAGCTGTGTCCAAAGC 921
|||||||||||||||||||||| |||||| || ||||| |||| ||||||||||||||
Sbjct 354 GATCAAGTTGGGTGATCAGCTTCAGATAAAAAAATTTTACAAGAAGGCTGTGTCCAAAGC 413
Query 922 AAAGCTGGGAATGTCCA-TAACGTC-ACCTCAAGGAAAGTCTACGGATGG-TGGCTATTT 978
||| | |||| ||| | ||||| | ||||||||||| |||| ||| || | |||||||
Sbjct 414 AAAACGGGGACTGT-TAGTAACG-CAACCTCAAGGAATGTCTGTGGA-GGTTAGCTATTT 470
Query 979 TACCAAGATAAAGACAGAACTTCAG-AATTGGATAGATCTTGCAACA-ACGAAGATGCAG 1036
| ||||||||||||||||||| || |||| |||| ||||||||||| | ||||||||||
Sbjct 471 TGGCAAGATAAAGACAGAACTTGAGAAATT-GATACATCTTGCAACAGA-GAAGATGCAG 528
Query 1037 GCGACTGTGGCTGTTTCTGAT-AT--AGGTACTATGGATAATCAGAAAG-AACCTGGGGA 1092
||| ||||| ||||||||||| || |||||||| || ||||||| | || | | |
Sbjct 529 GCGCCTGTGACTGTTTCTGATCATACAGGTACTACGGCCAATCAGATGGTAA-C-GATAA 586
Query 1093 AG-AAGATACTTCTTTTGATAGATTGAAGAAGATTTGGGTTAAATTGGATGACAAGACCA 1151
|| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 587 AGAAAGATCCTTCTTTTGATCGATTGAAGAACTTTTGGGTTAAATTGGATGACAAGACCA 646
Query 1152 AAA-TAAACTTTTTGGTAGTAGACTTT-GAAAAGCTTATAGGCTATATACAAG-ATAAGC 1208
||| | |||||||||||||||||| | ||| ||||||| ||||||| || ||||||
Sbjct 647 AAAGGGGA-TTTTTGGTAGTAGACTTTCG-AAATCTTATAGCCTATATA-GAGAATAAGC 703
Query 1209 ATGGGACGGAAGTAAAAGAGCACTTTCAGAAATGTATACCCATCGCCAATAATCTTCGAT 1268
|||||||| |||||||| | || |||||| |||| ||||||||||||||||||||||||
Sbjct 704 ATGGGACGCAAGTAAAAAAACATTTTCAGCTATGTGTACCCATCGCCAATAATCTTCGAT 763
Query 1269 GGAGATGTTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGTTTTACGGATTGCAAGA 1328
||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 764 GGAGATGCTGGAAATGCCACATTTGTTCTCAGGTAAACTACTGTTTTACAGATTGCAAGA 823
Query 1329 TGCACATCTTAGATAATCATGTGCACAAC-TCTGAACCTGACTTTAGTGCTCGTCCTAAG 1387
|||||||||||||||| ||||||||| || |||||||| | || |||||||||||||||
Sbjct 824 TGCACATCTTAGATAACCATGTGCAC-ACATCTGAACCCAAATTCAGTGCTCGTCCTAAG 882
Query 1388 TGTGTGGATGAGATTTTGGCTGACATGATATGCTGTGGGGATTGGAAGCCTGTGGATACA 1447
| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 883 TATGTGGATGAGATTTTGGCTGACATGATATGCTGTGGGGATTGGAAGCCAGTTGATACA 942
Query 1448 GCGGAGGCAGAAAATCTTATCAAGGATAGAGCTAAGCGCGGGGAAGAGTTTGTTTATGTT 1507
| | |||||| |||||| |||||||||||| ||||| || || ||||||| |||||||||
Sbjct 943 GAGAAGGCAGCAAATCTGATCAAGGATAGAACTAAGAGCCGGAAAGAGTTAGTTTATGTT 1002
Query 1508 AATGGGTGGTGTAGTGA 1524
||||| |||||||||||
Sbjct 1003 AATGGATGGTGTAGTGA 1019
> Ahg482366 jgi|Araly1|482366|fgenesh2_kg.4__1426__AT2G34230.2
Length=2217
Score = 1585 bits (858), Expect = 0.0
Identities = 1262/1455 (87%), Gaps = 36/1455 (2%)
Strand=Plus/Plus
Query 1037 GCGACTGTGGCTGTTTCTGATATAGGTACTATGGATAATCAGAAAG-AACCTGGGGAAG- 1094
||| ||||| ||||||| || | | ||| ||||||||||||| | | | || |||
Sbjct 478 GCGGCTGTGACTGTTTCCGAGACAAGTAGTATGGATAATCAG-ATGCTA-TTGATAAAGA 535
Query 1095 AAGATACTTCTTTTGAT-AGATTGAAGA-AGATTTGGGTTAAATTGGATGACAAGACCAA 1152
||||| | ||| | || || ||||| | | |||||||||| |||||||||||||| ||
Sbjct 536 AAGAT-C--CTTCTCATCAG-TTGAA-ATACTTTTGGGTTAATTTGGATGACAAGACTAA 590
Query 1153 AATAAACTTTTTGGTAGTAGACTTT-GAAAAGCTTATAGGCTATATACAAGATAAGCATG 1211
|| | |||||||||||||||||| | ||||||||||| ||| || ||| | |||
Sbjct 591 AAGGGATTTTTTGGTAGTAGACTTTCG-AAAGCTTATAGACTACATTTTTGATGTGTATG 649
Query 1212 GGACGGAAGTAAAA-GAGCACTTTCAGAAATGTATA--C-CCAT-CGCCAAT-AATCTTC 1265
| | ||||||||| || | |||| ||||||| || | |||| | | | | || ||
Sbjct 650 GCAAAGAAGTAAAAGGA-TATTTTCGGAAATGTGTAGCCACCATCCTCGATTCAA--GTC 706
Query 1266 GATGGAGATGTTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGTTTTACGGATTGCA 1325
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 707 GATGGAGATGCTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGTTTTACAGATTGCA 766
Query 1326 AGATGCACATCTTAGATAATCATGTGCACAACTCTGAACCTGACTTTAGTGCTCGTCCTA 1385
||||||||||||||||||||||||||||||| | |||||| ||||| ||||||| |||||
Sbjct 767 AGATGCACATCTTAGATAATCATGTGCACAAATATGAACCCGACTTCAGTGCTCATCCTA 826
Query 1386 AGTGTGTGGATGAGATTTTGGCTGACATGATATGCTGTGGGGATTGGAAGCCTGTGGATA 1445
||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 827 AGTATGTGGATGAGATTTTGGCTGACATGATATGTTGTGGGGACTGGAAGCCAGTGGATA 886
Query 1446 CAGCGGAGGCAGAAAATCTTATCAAGGATAGAGCTAAGCGCGGGGA-AGAGTTTGTTTAT 1504
|| | |||||| |||||| |||||||| ||| ||||| || || | |||||||||||||
Sbjct 887 TAGAGAAGGCAGCAAATCTGATCAAGGAGAGAACTAAGAGCCGG-ATAGAGTTTGTTTAT 945
Query 1505 GTTAATGGGTGGTGTAGTGATTGGCCTGAAGCGAAAGATCGCGAGCGGGAAAACGTACTC 1564
|||||||| ||||||||||||||||||| |||||| ||| || |||||||| |||||
Sbjct 946 GTTAATGGATGGTGTAGTGATTGGCCTGTAGCGAATGATAAAGACCGGGAAAATATACTC 1005
Query 1565 AAACAGTTTGCCGAGGTTCTAAAATCTTCTTGTGCCAAGGAGAATTGTACTCTTTCATGT 1624
||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1006 AAACAGTTTGCGGATGTTCTTAAATCTTCTTGCCCCAAGGAGAATCGTACTCTTTCATGT 1065
Query 1625 ACCCTTTGGGACTGGTTGAGAGATTACACAGAAGAGAATCTGGAACTACCTGGAGTTCCT 1684
|||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 1066 TCCCTTTGGGACTGGTTGATAGATTACACAGAAGAGCATCTCGAACTACCTGGAGTTCCT 1125
Query 1685 GGGATCTATCTTGATCAATGTTGCTTCTTTAAGAACCCTCAATGCATCTGCTTCTTAGAT 1744
|||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1126 GGGAGCTATCTTGATGAATGTAGCTTCTTTAAGAACCCTCAATGCATTTGCTTCTTAGAT 1185
Query 1745 CTTAAGCACCTTGAACACATCCTCAAGTATTTTAGACAGCTCACCACAGATGTTCGCGCG 1804
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||| |
Sbjct 1186 CTTAAGCACCTTAAACACATCCTCAAATATTTTAGACAGCTCACCACTGATGTCCGCG-G 1244
Query 1805 A-GTTTAGTTCCAAAAGTAGTGAATCAGTTTTGGGAAAATTCCCAGGTCAAGGAAAGAAT 1863
| |||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1245 AAGTTTGGTTTCAAAAGTAGTGAATCAGCTCTGGGAAAATTCCCAGGTCAAGGAAAGAAT 1304
Query 1864 CGACCTTGAGGGAGTAGCTACTTATAATCTGCTTCTGGACAAGAGACTGCTGTATGAAGA 1923
||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1305 CGATCTTGAGGGAGTAACTACTTATAATCTGCTTCTGGATAAGAGACTGCTGTATGAAGA 1364
Query 1924 AGAGCTTGAATCGGATAAGATAGG-GACAGTAGAGCATTATAAATCTACAGGGATTTTTG 1982
|| |||||||| |||||||| | | |||||||||||||||| |||| || || |||| ||
Sbjct 1365 AGTGCTTGAATTGGATAAGA-ATGAGACAGTAGAGCATTATCAATCCACTGGAATTTATG 1423
Query 1983 AGGATGTAATGCCTAAGGGTGATAAAATCGTCTCTTGGATTCTTGACTGCCCAGAAATCG 2042
||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1424 AGGATGTGATGCCTAAAGGTGATAAGATCGTCTCTTGGATTCTTGACTGCCCAGAAATCA 1483
Query 2043 ATCGGGAATTTGTGTCTCAAATGGCAAACGGCGTACACAATAGTAAGCTATGGTTAGCAG 2102
|| ||||||| |||||||| ||||||| ||| |||||||| || || ||||||||||||
Sbjct 1484 ATAAGGAATTTATGTCTCAAGTGGCAAAGGGCTTACACAATCGTGAGATATGGTTAGCAG 1543
Query 2103 CTT-TGAGAATAGTAC-GGTGTGTGATTAGGAAAAAGGAAAGCTACTATGATAAGAGACG 2160
|| |||||||||||| || | || |||||||||||||||||||||||||||||| |||
Sbjct 1544 -TTCTGAGAATAGTACAGG-GCATGGTTAGGAAAAAGGAAAGCTACTATGATAAGAAACG 1601
Query 2161 GAAGATGCTAACCTATGAGAAGATGTTGGGTGAGGCT-GAGACGATTTGTGACAGAGAAG 2219
| ||||||||||||||||||||||||||||| || | || || ||||||||||||||||
Sbjct 1602 CAGGATGCTAACCTATGAGAAGATGTTGGGTGTGG-TAGACACCATTTGTGACAGAGAAG 1660
Query 2220 ACACTAGGAAGAATGTTAATCAGCGGAGCACATATGAGTCTGCACTTCGAATGAAATGTG 2279
||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1661 ACACTAGAAAGAATGTTAATCAGCGGAGCACATATGAGTTTTCGCTTCGAATGAAATGTG 1720
Query 2280 AGGATCTTGTAGGTAAGCAAGATGATGATACAAAATGTTT-CTTGAGTGTTGTAAGAGAT 2338
|||| ||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 1721 AGGAGCTTGTTGGTAAGCAAGATGATGATACAAAA-GTTTTCTTGACTGTTGTAAGAGAT 1779
Query 2339 GTTTTTGAAAGACAAAGCTCTCCGAGCTTTGAAGTATTCGAAGATAAGAAGTGTATATCC 2398
||||||| ||||| | || |||| | ||| ||| ||| ||||||| | |||||||||||
Sbjct 1780 GTTTTTGTAAGACTATGCACTCCAAATTTTAAAGCATTAGAAGATATGGAGTGTATATCC 1839
Query 2399 GAACTCTCTTCTACTGTCCCGAATGATGATGTGaaaaaaaGTCTGTTAACGCTAAGGAAA 2458
|||||||| |||||||||| ||||||||||| || |||||||| || | | ||||||||
Sbjct 1840 AAACTCTCTGCTACTGTCCCAAATGATGATGTTAAGAAAAGTCTTTTGAGGTTAAGGAAA 1899
Query 2459 TCACTGAAAGAGAAG 2473
|| |||||||||||
Sbjct 1900 TCGTTGAAAGAGAAG 1914
> Ahg934020 jgi|Araly1|934020|scaffold_402008.1
Length=2189
Score = 1543 bits (835), Expect = 0.0
Identities = 1077/1190 (91%), Gaps = 32/1190 (3%)
Strand=Plus/Plus
Query 1522 TGATTGGCCTGAAGCGAAAGATCG-CGAGCG--GGAAAACGTACTCAAACAGTTTGC-CG 1577
|||||||||||||| ||| ||| | ||||| |||||| |||||||||||||||| |
Sbjct 927 TGATTGGCCTGAAGTGAAGGAT-GAAGAGCGAAGGAAAA--TACTCAAACAGTTTGCTC- 982
Query 1578 AGGTTCTAAAATCTTC-TTGTGCCAAGGAGAATTG-TACTCTTTCATGTACCCTTTGGGA 1635
||||||| |||||||| || || || || || || ||||||||||||||||||||||||
Sbjct 983 AGGTTCTTAAATCTTCTTTCTG-TAATGACAA-TGATACTCTTTCATGTACCCTTTGGGA 1040
Query 1636 CTGGTTGAGAGATTACACAG-AAGAGAATCTGGAACTACCTGG-AGTTCCTGGGATCTAT 1693
|||||||| ||||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||
Sbjct 1041 CTGGTTGATAGATTACACAGAAAG-GAATCTGCAACTA-CTGGAAGTTCCTGGGAGCTAT 1098
Query 1694 CTTGATCAATGTTGCTTCTTTAAGAACCCTCAATGCATCTGCTTCTTAGATCTTAAGCAC 1753
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1099 CTTGATAAATGTGGCTTCTTTAAGAACCCTCAGTGCATCTGCTTCTTAGATCTTAAGCAC 1158
Query 1754 CTTGAACACATCCTCAAGTATTTTAGACAGCTCACCACAGATGTTCGCGCGAGTTTAGTT 1813
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTTGAACACATCCTCAAATATTTTAGACAGCTCACCACAGATGTTCGCGCGAGTTTAGTT 1218
Query 1814 CCAAAAGTAGTGAATCAGTTT-TGGGAAAATTCCCAGGTCAAGGAAAGAATCGACCTTGA 1872
||||||||||||||| |||| ||| |||| || | ||||||||||| ||||| |||||
Sbjct 1219 CCAAAAGTAGTGAATT-GTTTCTGGAAAAACTCACGGGTCAAGGAAACAATCGGTCTTGA 1277
Query 1873 GGGAGT-AGCTACTTATAATCTGCTTCTGGACAAGAGACTGCTGTATGAAGAAGAGCTTG 1931
| || | | | | || ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1278 GAGACTTA-C-A-TT-TAATCTGCTTCTGGATGGGAGACTGCTGTGTGAAGAAGAGCTTG 1333
Query 1932 AATCGGATAAGATAGGGACAGTAGAGCATTATAAATCTACAGGGATTTTTGAGGATGTAA 1991
|||| |||||||||||||||||||||||||||||||| || | |||| ||||||||| |
Sbjct 1334 AATCAGATAAGATAGGGACAGTAGAGCATTATAAATCCACTGCAATTTATGAGGATGTGA 1393
Query 1992 TGCCTAAGGGTGATAAAATCGTCTCTTGGATTCTTGACTGCCCAGAAATCGATCGGGAAT 2051
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1394 TGCCTAAGGGTGATAAGATCGTCTCTTGGATTCTTGACTGCCCAGAAATCGATCTGGAAT 1453
Query 2052 TTGTGTCTCAAATGGCAAACGGCGTACACAATAGTAAGCTATGGTTAGCAGCTTTGAGAA 2111
||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 1454 TTGTGTCTCAAATGGCAAACGGCTTACACAATCGTGAGATATGGTTAGCAGCTTTGAGAA 1513
Query 2112 TAGTACG-GTGTGTGATTAGGAAAAAGGAAAGCTACTATGATAAGAGACGGAAGATGCTA 2170
||||||| | | || ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1514 TAGTACGAG-GCATGGTTAGGAACAAGGAAAGCTACTATGATAAGAGACACAAGATGCTA 1572
Query 2171 ACCTATGAGAAGATGTTGGGTGAGGCTGAGACGATTTGTGACAGAGAAGACACTAGGAAG 2230
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1573 ACCTATGAGAAGATGTTGTGTGAGGCAGAGACCATTTGTGACAGAGAAGACACTAGAAAG 1632
Query 2231 AATGTTAATCAGCGGAGCACATATGAGTCTGCACTTCGAATGAAATGTGAGGATCTTGTA 2290
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1633 AATGTTAATCAGCGGAGCACATATGAGTTTGCACTTCGAATGAAATGTGAGGAGCTTGTA 1692
Query 2291 GGTAAGCAAGATGATGATACAAAATGTTTCTTGAGTGTTGTAAGAGATGTTTTTGAAAGA 2350
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1693 GGTAAGCAAGATGATGATACAAAATGTTTCTTGACTGTTGTAAGAGATGTTTTTCAAAGA 1752
Query 2351 CAAAGCTCTCCGAGCTTTGAAGTATTC-GAAGATAAG-A--AGTGTATATCCGAACTCTC 2406
|||||||||| || |||||||||| | ||||||||| | ||||||||||| |||||||
Sbjct 1753 AAAAGCTCTCCAAGTTTTGAAGTAT-CAGAAGATAAGGAGGAGTGTATATCCAAACTCTC 1811
Query 2407 TTCTACTGTCCCGAATGATGATGTGaaaaaaaGTCTGTTAACGCTAAGGAAATCACTGAA 2466
| |||||||||| ||||||||||| || |||||||||| ||||||| |||||| |||||
Sbjct 1812 TACTACTGTCCCAAATGATGATGTTAAGAAAAGTCTGTGGACGCTAAAGAAATCTCTGAA 1871
Query 2467 AGA-GAAGTTCCCTTTGATTGATTCAAAGATTTTGCAGAACAAATCTACGTACGAAAAGC 2525
|| ||||||||||||||||||||| |||||||||| |||||| ||| ||||| ||||||
Sbjct 1872 -GAAGAAGTTCCCTTTGATTGATTCGAAGATTTTGCGGAACAAGTCTGCGTACAAAAAGC 1930
Query 2526 TAATAGATGTATTCCCGAAGCTATCAGCAGTTGAGTATCGCTTGGTGGTCCTTCCATTCG 2585
||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1931 TAATATATGTATTCCCAAAGCTATCAGCAGTTGAGTATCGCTTGGTGGTCCTTCCGTTCG 1990
Query 2586 TGAAGAAGTTCTTACAGGATAAACTGAAGAAAATGATGAAAACAAACAGCAGTTCAGTTG 2645
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1991 TGAAGAAGTTCTTACAGGATAAACTGAAGAAAATGATGAAAACAAATAGCAGTTCAGTTG 2050
Query 2646 CTGCAGGAGATTCTGCTGAACGGAAACCTAAGAAGAGACATCTTTGAAAT 2695
||||||| | |||||||||||| |||||||||||||||||||||| ||||
Sbjct 2051 CTGCAGGCGGTTCTGCTGAACGAAAACCTAAGAAGAGACATCTTTCAAAT 2100
Score = 726 bits (393), Expect = 0.0
Identities = 757/925 (82%), Gaps = 56/925 (6%)
Strand=Plus/Plus
Query 532 TACGATGATGATGAAGAGTACAGACGAAAGTGA----A--ACAA-AAT--GGAAGATCGA 582
||||||||||| ||||||| |||| |||||||| | | || ||| ||||||||
Sbjct 18 TACGATGATGACGAAGAGTTCAGAGGAAAGTGACGCCAGTAAAACAATAAAGAAGATCGT 77
Query 583 CGATGCAGCCGAACTTGCTAGAGACTTCTGGCTCGAA--CGTG-ACGGCATTTCGGCTTT 639
|||||||||||||||||| |||||||| | | | || | | || |||| ||||||
Sbjct 78 CGATGCAGCCGAACTTGCCAGAGACTTGTTG--CAAATTCAAGAAC-ACATTAAGGCTTT 134
Query 640 GAAATTAACAGAGAAAACGATTTCTGATCATGGGAATCACGAAAAGT-GCTCTAGTCACC 698
| ||||||| |||||||||||||||||||||||||||||||||| || ||| | ||| |
Sbjct 135 GGAATTAACCGAGAAAACGATTTCTGATCATGGGAATCACGAAA-GTTGCTTTTTTCATC 193
Query 699 ACGAACTGCAAGGTGATATCTTCTATGCCCAAGCGA-AGAAAACAGATGACACCGACCTC 757
|||||||||||||||||||||| | || | ||| | ||||| ||||| |||| ||| ||
Sbjct 194 ACGAACTGCAAGGTGATATCTTTTTTGTGCTAGCCACAGAAA-CAGATAACACTGACGTC 252
Query 758 AAATGCTTATACTTGTTTGCTTCTGTCGATGCGTATTCAATGGCTACTCTTCTGTCTCCT 817
|||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct 253 AAATGCGTATACTTGTTTACTTCTGTCGATGCATATTCAATGGCTACTCTTCTGTGTCCT 312
Query 818 AACGCTTTGACTTTGAGGTCCTTTCGTGGCTATGCTCGTTCGCTAATCAAGTTGGGTGAT 877
||||||||| | | |||||||||||||||||||||||| | ||| |||||||| ||
Sbjct 313 GACGCTTTGA----G-G-TCCTTTCGTGGCTATGCTCGTTCGATGATCCAGTTGGGTAAT 366
Query 878 CAGCTTCGGATAAACAAGTTTTATGAGAAAGCTGTGTCCAAAGCAAAGCTGGGAATGTCC 937
||||||||||||||| ||||||| ||||||||||| |||||||||| | |||| |||
Sbjct 367 CAGCTTCGGATAAACCAGTTTTACAAGAAAGCTGTGACCAAAGCAAAACGGGGATTGTT- 425
Query 938 A-TAACGTCA-CCTCAAGGAAAGTCTACGGA--TGGT-GGCTAT-TT-TA-CCAAGATAA 989
| ||||| || ||||||||| || || | | || |||||| || || || | |
Sbjct 426 AGTAACG-CAACCTCAAGGACCGTATATGTCCCTAGTAGGCTATATTGTAGCCTTGG-AG 483
Query 990 AGACAGAACTTCAGAATTGGATAGATCTTGCAACAACGAAGATGCAGGCGACTGTGGCTG 1049
| ||||||||||||||| ||||||||||||||||| |||||||| ||| ||||| |||
Sbjct 484 -G-CAGAACTTCAGAATTTGATAGATCTTGCAACAAAAAAGATGCATGCGGCTGTGACTG 541
Query 1050 TTTCTGATATAGGTACTATGGATAATCAGAAAG-AACC-TGGGGAAGAAGATACTTCTTT 1107
||||||||| ||||||||||| |||||||| | ||| | | ||| | ||| |||||||
Sbjct 542 TTTCTGATACAGGTACTATGGCTAATCAGATTGCAACGATAGAGAA-A-GATCCTTCTTT 599
Query 1108 TGATAGATTGAAGAAGATTTGGGTTAAAT-TGGATGACAAGACCAAAATA-AACTTTTTG 1165
|||| |||||||||| |||||||||| | |||||||||||||||||| | || ||||||
Sbjct 600 TGATCGATTGAAGAACTTTTGGGTTAA-TCTGGATGACAAGACCAAAAGAGAA-TTTTTG 657
Query 1166 GTAGTAGACTTT-GAAAAGCTTATAGGCTATATACAAGA-TAAGCATGGGA-CGGAAGTA 1222
|||||||||| | |||| |||||||| |||| || | || |||| |||| | | ||||
Sbjct 658 GTAGTAGACTCTAGAAA-GCTTATAGACTATGTAGA-GAATAAGTATGGTAACA-AAGTG 714
Query 1223 AAAGA-GCACTTTCAGAAATGTATACCCATCGCCAATAATCTTCGATGGAGATGTTGGAA 1281
||||| | | ||| ||||||| || || | ||||||||||||| ||||||| | |||||
Sbjct 715 AAAGAAG-ATTTTGGGAAATGTGTATCCGTTGCCAATAATCTTCCATGGAGAGGATGGAA 773
Query 1282 GTGCCACATTTGTTCTCAGGTTAACTACTGTTTTACGGATTGCAAGATGCACATCTTAGA 1341
||||||||||||||||||||| |||||| ||||||| |||||| ||| ||||||||||||
Sbjct 774 GTGCCACATTTGTTCTCAGGTAAACTACAGTTTTACAGATTGCCAGAGGCACATCTTAGA 833
Query 1342 TAATCATGTGCACAACTCTGAACCTGA-CTTTAGTGCTCGTCCTAAGTGTGTGGATGAGA 1400
||| |||||||| || | || ||| || | |||| ||||||||||||||| ||| ||
Sbjct 834 TAACCATGTGCAAAATTTTGTACCCGATCCC-AGTGGTCGTCCTAAGTGTGTAGATAAGG 892
Query 1401 TTTTGGCTGACATGATATGCTGTGG 1425
||||||||||||||||||| |||||
Sbjct 893 TTTTGGCTGACATGATATGTTGTGG 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112251952015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5