BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34230.1
Length=2355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482366 jgi|Araly1|482366|fgenesh2_kg.4__1426__AT2G34230.2 1927 0.0
Ahg934018 jgi|Araly1|934018|scaffold_402006.1 1286 0.0
Ahg934020 jgi|Araly1|934020|scaffold_402008.1 1253 0.0
> Ahg482366 jgi|Araly1|482366|fgenesh2_kg.4__1426__AT2G34230.2
Length=2217
Score = 1927 bits (1043), Expect = 0.0
Identities = 1333/1471 (91%), Gaps = 28/1471 (2%)
Strand=Plus/Plus
Query 486 gaaggagaagaaTAGCAATGCGGTTGTGACTGTTTCTGAGACAAGTACTATGGCTAATCA 545
|||| |||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct 459 GAAGAAGAAGAATAGCAATGCGGCTGTGACTGTTTCCGAGACAAGTAGTATGGATAATCA 518
Query 546 GATGGTATTGAAAAAGAAAAATCCTTTTCAACAATTGAAATTCTTTTGGGTTAATTTGGA 605
|||| |||||| ||||||| |||||| ||| || ||||||| ||||||||||||||||||
Sbjct 519 GATGCTATTGATAAAGAAAGATCCTTCTCATCAGTTGAAATACTTTTGGGTTAATTTGGA 578
Query 606 TGACAAGACTAAAAGGGATTTTTTGGTAGTAGACTTTCGAAAGCTTATTGAATATA-TTC 664
|||||||||||||||||||||||||||||||||||||||||||||||| || || | ||
Sbjct 579 TGACAAGACTAAAAGGGATTTTTTGGTAGTAGACTTTCGAAAGCTTATAGACTACATTTT 638
Query 665 AGAATGAGTATGGCAAGGAAGTAAAACGATATTTTCGGAAATGTGTA---ATCAGCCTC- 720
| ||| ||||||||| ||||||||| |||||||||||||||||||| | || ||||
Sbjct 639 TG-ATGTGTATGGCAAAGAAGTAAAAGGATATTTTCGGAAATGTGTAGCCACCATCCTCG 697
Query 721 ATATCACTTC-ATTGGAGATACTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGTTT 779
|| ||| || | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 698 AT-TCAAGTCGA-TGGAGATGCTGGAAGTGCCACATTTGTTCTCAGGTTAACTACTGTTT 755
Query 780 TACAGATTGCAAGATGCACATCTTAGATAAGCATGTGCACAAATATGAACCCGAGTTCAG 839
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 756 TACAGATTGCAAGATGCACATCTTAGATAATCATGTGCACAAATATGAACCCGACTTCAG 815
Query 840 TGATCGTCCTAAGTATGTGGATGAGATTTTGGCTGACATGATATGCTGTGGGGATTGGAA 899
|| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 816 TGCTCATCCTAAGTATGTGGATGAGATTTTGGCTGACATGATATGTTGTGGGGACTGGAA 875
Query 900 GCCAGTGGATATAGCGCAGGCAGCAAATCTGATTAATGATAGAATTAAGAGCCAGAAAGA 959
|||||||||||||| | |||||||||||||||| || || |||| |||||||| || |||
Sbjct 876 GCCAGTGGATATAGAGAAGGCAGCAAATCTGATCAAGGAGAGAACTAAGAGCCGGATAGA 935
Query 960 GTTTGTTTATGTTAATGGATGGTGTAGTGATTGGCCTGTAGCGGGTGATGAAA-AGCGGG 1018
||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||
Sbjct 936 GTTTGTTTATGTTAATGGATGGTGTAGTGATTGGCCTGTAGCGAATGAT-AAAGACCGGG 994
Query 1019 AAACCATTCTCAAACAGTTTTCTGAGGTTCTTAAAGCTTCTTGCCCTAGGGAGAATTGTA 1078
||| || |||||||||||| | || ||||||||| |||||||||| | ||||||| |||
Sbjct 995 AAAATATACTCAAACAGTTTGCGGATGTTCTTAAATCTTCTTGCCCCAAGGAGAATCGTA 1054
Query 1079 CTCTTTCATGTACCCTTTGGGACTGGTTGATCGATTACACAGAAGAGCATCTGGATCTAC 1138
||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1055 CTCTTTCATGTTCCCTTTGGGACTGGTTGATAGATTACACAGAAGAGCATCTCGAACTAC 1114
Query 1139 CTGGAGTTTCC-GGGAGCTATCTTGATAAATGTAGCTTCTTTAAGAACCCTCAGTGCATC 1197
|||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1115 CTGGAGTT-CCTGGGAGCTATCTTGATGAATGTAGCTTCTTTAAGAACCCTCAATGCATT 1173
Query 1198 TGCTTCTTAGATCTTAAGCACCTTAAACACATCCTCAAAAAATTTAGCCAGCTCACCACT 1257
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 1174 TGCTTCTTAGATCTTAAGCACCTTAAACACATCCTCAAATATTTTAGACAGCTCACCACT 1233
Query 1258 GATGTCCGCGAAAGTTTGGTTTCAAAAGTAGTGAATCAGCTCTGGGAAAATTCCCTGGTC 1317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1234 GATGTCCGCGGAAGTTTGGTTTCAAAAGTAGTGAATCAGCTCTGGGAAAATTCCCAGGTC 1293
Query 1318 AAGGAAAGACTCGATCTTGAGGGAC-ACACTAATTCTAATCTGCTTCTGGATAAGAGACT 1376
||||||||| |||||||||||||| | |||| || ||||||||||||||||||||||||
Sbjct 1294 AAGGAAAGAATCGATCTTGAGGGAGTA-ACTACTTATAATCTGCTTCTGGATAAGAGACT 1352
Query 1377 GCTGTGTGAAGAAGAGCTTGAATTGGATCAGAATGAGACAGTAGAGCATTATGAATCCAC 1436
||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1353 GCTGTATGAAGAAGTGCTTGAATTGGATAAGAATGAGACAGTAGAGCATTATCAATCCAC 1412
Query 1437 TGGCATTTATGAGGATGTGATGCCTAAGGGTGATAAGATAGTCTCTTGGATTCTTGACTG 1496
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1413 TGGAATTTATGAGGATGTGATGCCTAAAGGTGATAAGATCGTCTCTTGGATTCTTGACTG 1472
Query 1497 CCCAAAAATCGATAAGGAATTTATGTCTCAAATGGCAAAGGTGGCAAAGGGCTTACACAA 1556
|||| ||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1473 CCCAGAAATCAATAAGGAATTTATGTCTCAA--G-------TGGCAAAGGGCTTACACAA 1523
Query 1557 TCGTGAGATATGGTTAGCAGTTTTGAGAATCGTACAGGGCCTGGTTAGGAAAAAGGAAAG 1616
|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||
Sbjct 1524 TCGTGAGATATGGTTAGCAGTTCTGAGAATAGTACAGGGCATGGTTAGGAAAAAGGAAAG 1583
Query 1617 CTACTATGATAAGCGACGGAAGATGCTAAGCTATGAGAAGATGTTGTGTGAGGTTGAGAC 1676
||||||||||||| ||| | |||||||| |||||||||||||||| ||| ||| || ||
Sbjct 1584 CTACTATGATAAGAAACGCAGGATGCTAACCTATGAGAAGATGTTGGGTGTGGTAGACAC 1643
Query 1677 CATTTGTGACAGAGAAGACACTAGGAAGAATGTTAATCAGCGGAGCACATATGAGTTTGC 1736
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1644 CATTTGTGACAGAGAAGACACTAGAAAGAATGTTAATCAGCGGAGCACATATGAGTTTTC 1703
Query 1737 GCTTCGAACGGAATGTGAGAAGCTTGTAGGTAAGCAAGATGATAATAGAAAA-TATTTCT 1795
|||||||| | |||||||| ||||||| ||||||||||||||| ||| |||| | |||||
Sbjct 1704 GCTTCGAATGAAATGTGAGGAGCTTGTTGGTAAGCAAGATGATGATACAAAAGT-TTTCT 1762
Query 1796 GGACTGTTGTAAAAGATGTTTTTGTAAAACTATGCCCTCCAGTATTTGGC-GTATTAGAA 1854
||||||||||| |||||||||||||| ||||||| ||||| |||| | |||||||
Sbjct 1763 TGACTGTTGTAAGAGATGTTTTTGTAAGACTATGCACTCCAA-ATTTTAAAGCATTAGAA 1821
Query 1855 GATATGGAGTGTATATCCAAACTCTCTGCTACTGTCTCAAATGATGAAGTTAAGAAAAGT 1914
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1822 GATATGGAGTGTATATCCAAACTCTCTGCTACTGTCCCAAATGATGATGTTAAGAAAAGT 1881
Query 1915 ATGTTGAGGTTAAGGAAATCGTTGAAAGAGA 1945
| ||||||||||||||||||||||||||||
Sbjct 1882 CTTTTGAGGTTAAGGAAATCGTTGAAAGAGA 1912
Score = 521 bits (282), Expect = 7e-147
Identities = 387/436 (89%), Gaps = 14/436 (3%)
Strand=Plus/Plus
Query 1 ATGATGAAGAATCCAGAGaaaaaat-atgacaaagaaacaaaaaaGGAGATTGACGATGA 59
|||||||||||| ||||| |||| | |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGATGAAGAATTCAGAG-AAAAGTGATGACAAAGAAACAAAAAAGAAGATTGACGATGC 59
Query 60 ATACAATCTCGCCAAAGGCTACTGGAAAAAAGGTAACCGTATTGAAGCCTTGATGTTAAC 119
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 60 ATACAATCTTGCCAAAGGCTTCTGGAAAAAAGGTAACCGTATTGAGGCCTTGATGTTAAC 119
Query 120 CGAGAAAACGATTTCAGATCAGGGGAAGAA-CGAATCTTCCTGCTATGTTCACCACGAAC 178
||||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||
Sbjct 120 CGAGAAAACGATTTCAGATCATGGGA-GAAACGAATCTTGCTGCTATGTTCACCACGAAC 178
Query 179 TGCAAGGTGATATCTTTTATCAACTAGCAGAAGAAACAGAG--A----TCACCAACGACA 232
| |||||||||||||| ||||| || || | ||||| |||| | ||||||||||||
Sbjct 179 TTCAAGGTGATATCTTCTATCAGCTTGCGGGAGAAATAGAGTTAGAGATCACCAACGACA 238
Query 233 TCAAACGTGTATACTTGTTTGCTTCTCTCGATGCGTTTTCAATGTTTACTCTTCCGTGTC 292
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 239 TCAAACGCGTATACTTGTTTGCTTCTCTCGATGCGTTTTCAATGTCTATTCTTCTGTGTC 298
Query 293 ATGACGCTTTGAAGTCCTTTCGTGGTTGTGTTCTTTCGCTAATCCAGTTGGGTGATCAGC 352
||||||||||| ||| |||||||| |||| || |||||||||| |||| ||||||||||
Sbjct 299 CTGACGCTTTGAGGTCATTTCGTGGCTGTGCTCGTTCGCTAATCGAGTTAGGTGATCAGC 358
Query 353 TTGGGATAAAGAAGTTTTAT-AGGAAAGCTGCGTCGAAAGCATATCAGGCATTGTCCGTA 411
|||||||||||||||||||| || ||||||||||||| ||||| ||||| | ||||| ||
Sbjct 359 TTGGGATAAAGAAGTTTTATGAG-AAAGCTGCGTCGAGAGCATGTCAGGGAGTGTCCATA 417
Query 412 ACGAATTCCTCAGAGA 427
|| || ||||| |||
Sbjct 418 ACAAAA-CCTCA-AGA 431
Score = 180 bits (97), Expect = 5e-44
Identities = 106/110 (96%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 2077 GATAAACTGAAAAAGATGATGGAAACAAATAGCAATTCAGTTGCTGCAGGAGATTCTGTC 2136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 GATAAACTGAACAAGATGATGGAAACAAATAGCAATTCAGTTGCTGCAGGAGATTCTGTC 2010
Query 2137 AACATGCAGGGCTAAGATTTTTGGAGGATCATTCTTCCAGATGGAGAAAA 2186
||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 2011 AACATGCAGGGCTAAAATTTT-GGAGGATCATTCTTGCAGATGGAGAAAA 2059
Score = 159 bits (86), Expect = 6e-38
Identities = 97/102 (95%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 2208 AGAAAACAGTCTTTTAATGTTCTCGGAAAAACTTTTGGATTGGAGAGAAAAACTGTATAT 2267
|||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2054 AGAAAATAGTGTTTTTATGTTCTCGGAAAAACTTTTGGATTGGAGAGAAAA-CTGTATAT 2112
Query 2268 GAAAATTTGTAGTTTGTTTTAGGATCAGATGCATATATGTTT 2309
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 2113 GAAAATTTGTAGTTTGTTTTAGGACCAGATGCATATATGTTT 2154
> Ahg934018 jgi|Araly1|934018|scaffold_402006.1
Length=2222
Score = 1286 bits (696), Expect = 0.0
Identities = 981/1115 (88%), Gaps = 34/1115 (3%)
Strand=Plus/Plus
Query 1034 AGTTTTCTGAGGTTCTTAAAGCTTCTTG-CCCTAGGGAGAATTGTACTCTTTCATGTACC 1092
||||||| |||||||||||| ||||||| || | ||||||| |||||||||||||| ||
Sbjct 1019 AGTTTTCCGAGGTTCTTAAATCTTCTTGTGCC-AAGGAGAATCGTACTCTTTCATGTGCC 1077
Query 1093 CTTTGGGACTGGTTGATCGATTACACAGAAGAGCATCTGGATCTACCTGGAGTTTCC-GG 1151
||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1078 CTTTGGGACTGGTTGGTAGATTACACAGAAGAGAATCTGGATCTACCTGGAG-TTCCTGG 1136
Query 1152 GAGCTATCTTGATAAATGTAGCTTCTTTAAGAACCCTCAGTGCATCTGCTTCTTAGATCT 1211
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 GATCTATCTTGATAAATGTAGCTTCTTTAAGAACCCTCAATGCATCTGCTTCTTAGATCT 1196
Query 1212 TAAGCACCTTAAACACATCCTCAAAAAATTTAGCCAGCTCACCACTGATGTCCGCGAAAG 1271
||||||||||||||||||||||||| | ||||| ||||||||||||||||| || | |||
Sbjct 1197 TAAGCACCTTAAACACATCCTCAAATATTTTAGACAGCTCACCACTGATGTTCGAGCAAG 1256
Query 1272 TTTGGTTTCAAAAGTAGTGAATCAGCTCTGGGAAAATTCCCTGGTCAAGGAAAGACTCGA 1331
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||
Sbjct 1257 TTTGGTTTCAAAAGTAGTGAATCAGTTCTGGGAAGATTCCCAGGTCAAGGAAAGAATCGA 1316
Query 1332 TCTTGAGGGACACACTAATTCTAATCTGCTTCTGGATAAGAGACTGCTGTGTGAAGAAGA 1391
||||||||||| |||| || |||||| |||||||| ||||||||| ||| |||||||||
Sbjct 1317 TCTTGAGGGACTTACTACTTATAATCTACTTCTGGACAAGAGACTGTTGTATGAAGAAGA 1376
Query 1392 GCTTGAATTGGATCAGA-AT-GAGACAGTAGAGCATTATGAATCCACTGGCATTTATGAG 1449
| |||||| |||| | | || | |||||||||||||||| |||||||||| || ||||||
Sbjct 1377 GATTGAATCGGAT-A-ATATAGGGACAGTAGAGCATTATAAATCCACTGGAATCTATGAG 1434
Query 1450 GATGTGATGCCTAAGGGTGATAAGATAGTCTCTTGGATTCTTGACTGCCCAAAAATCGAT 1509
|||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
Sbjct 1435 GATGTGATGCCTAAGGGTGATAAGATTGTCTCTTGGATTTTTGACTGCCCAGAAATCGGT 1494
Query 1510 AAGGAATTTATGTCTCAAATGGCAAAGGTGGCAAAGGGCTTACACAATCGTGAGATATGG 1569
|||| ||| |||||||||||||||| || | | |||||||||||||| |||||
Sbjct 1495 CAGGACTTTGTGTCTCAAATGGCAAA---GG----GTG--TACACAATCGTGAGCTATGG 1545
Query 1570 TTAGCAGTTTTGAGAATCGTACAGG-GCCTGGTTAGGAAAAAGGAAAGCTACTATGATAA 1628
||||||| ||||||||| |||| || | |||||||||||| |||||| |||||||||||
Sbjct 1546 TTAGCAGCTTTGAGAATAGTAC-GGTGTGTGGTTAGGAAAATGGAAAGGTACTATGATAA 1604
Query 1629 GCGACGGAAGATGCTAAGCTATGAGAAGATGTTGTGTGAGGTTGAGACCATTTGTGACAG 1688
| ||| | |||| ||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 1605 GAGACACAGGATGGTAACCTATGAGAAGATGTTGAATGAGGCTAAGACCATTTGTGACAG 1664
Query 1689 AGAAGACACTAGGAAGAATGTTAATCAGCGGAGCACATATGAGTTTGCGCTTCGAACGGA 1748
||||||| |||||||||||| |||||||||||||||||||||| || |||||||| | |
Sbjct 1665 AGAAGACTCTAGGAAGAATGAAAATCAGCGGAGCACATATGAGTCTGTGCTTCGAATGAA 1724
Query 1749 ATGTGAGAAGCTTGTAGGTAAGCAAGATGATAATAGAAAATATTTCTGGACTGTTGTAAA 1808
||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||
Sbjct 1725 ATGTGAGGAGCTTGTAGGTAAGCAAGATGATGATACAAAATGTTTCTTGACTGTTGTAAG 1784
Query 1809 AGATGTTTTTGTAAA-ACTATGCCCTCC-AGTATTTGGCGTATTAGAAGAT-A--TGGAG 1863
|||||||||| ||| | | || |||| ||| |||| |||||||||||| | ||||
Sbjct 1785 AGATGTTTTT-CAAAGAAAAAGCTCTCCAAGT-TTTGAAGTATTAGAAGATAAGGAGGAG 1842
Query 1864 TGTATATCCAAACTCTCTGCTACTGTCTCAAATGATGAAGTTAAGAAAAGTATGTTGAGG 1923
||||||||||||| |||| |||||||| |||||||||| |||||||||||| ||| || |
Sbjct 1843 TGTATATCCAAACGCTCTACTACTGTCCCAAATGATGATGTTAAGAAAAGTCTGTCGACG 1902
Query 1924 TTAAGGAAATCGTTGAAAGAGATGTTCCTTTTGATTGATTCAAAGATTTTGCGGAACGAA 1983
|||| || |||| ||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 1903 TTAAAGACATCGCTGAAAGAGAAGTTCCCTTTGATTGATTCAAAGATTTTGCGGAAC-AA 1961
Query 1984 TG-C-ACATACAAAAAGCTAATAGATGTATTCCCAAAGCTATCAGTTGTTGAGTATCGCT 2041
| | || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1962 -GTCTACGTACAAAAAGCTAATAGATGTATTCCCAAAGCTATCAGCAGTTGAGTATCGGT 2020
Query 2042 TGGTGGTCCTTCCGCTT-GTGAAGAAGTTCTTACAGGATAAACTGAA-AAAGATGATGGA 2099
||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 2021 TGGTGGTCCTTCCA-TTCGTGAAGAAGTTCTTACAGGATAAACTGAAGAAA-ATGATGAA 2078
Query 2100 AACAAATAGCAATTCAGTTGCTGCAGGAGATTCTG 2134
||||||||||| |||||||||||||||||||||||
Sbjct 2079 AACAAATAGCAGTTCAGTTGCTGCAGGAGATTCTG 2113
Score = 588 bits (318), Expect = 7e-167
Identities = 718/904 (79%), Gaps = 55/904 (6%)
Strand=Plus/Plus
Query 115 TTAACCGAGAAAACGATTTCAGATCAGGGGAAGAACGAATCTTCCTGCTATGTTCACCAC 174
||||| |||||||||||||| ||||| ||||| | ||| | || || | |||||||
Sbjct 142 TTAACAGAGAAAACGATTTCTGATCATGGGAATCATGAAAAGTGCT-TTA-G-TCACCAC 198
Query 175 GAACTGCAAGGTGATATCTTTTATCAACTAGCAGAAGAAACAGAGATCACCAACGACATC 234
|||||||||||||||||||| ||| | | ||| | | || | |||| | || |||| ||
Sbjct 199 GAACTGCAAGGTGATATCTTCTATGACCAAGC-G-ATCAATACAGATGA-CACCGACCTC 255
Query 235 AAACGTGTATACTTGTTTGCTTCTCTCGATGCGTT-TTCAATGTTTACTCTTCCGTGTCA 293
||| |||||||||||||||||||| ||||||| || ||||||| |||||||| || ||
Sbjct 256 AAATGTGTATACTTGTTTGCTTCTGTCGATGC-TTATTCAATGGCTACTCTTCTGTATCC 314
Query 294 TGACGCTTTGAAG-TCCTTTCGTGGTTGTGTTCTTTCGCTAATCCAGTTGGGTGATCAGC 352
| ||| | || || ||||||| || | || || |||| | ||| |||||||||||||||
Sbjct 315 TTACGATATG-AGCTCCTTTCCCGGCTATGCTCATTCGATGATCAAGTTGGGTGATCAGC 373
Query 353 TTGGGATAAAGAAGTTTTATAGGAAAGCTGCGTCGAAAGCATATCAGGCATTGTCCGTAA 412
|| |||||| || ||||| | ||| |||| ||| |||||| | | || | ||| ||||
Sbjct 374 TTCAGATAAAAAAATTTTACAAGAAGGCTGTGTCCAAAGCAAAACGGGGACTGTTAGTAA 433
Query 413 CG-AATTCCTCAGAGAAATATACCGCTTTGAACAAAG-AATTTGATGG-GTGGT-ATG-- 466
|| || ||||| || ||| | | | | || || |||| ||| | | | |
Sbjct 434 CGCAA--CCTCA-AGGAATGT-CTG--TGGAGGTTAGCTATTT--TGGCAAGATAAAGAC 485
Query 467 -GATAC--GCag-aa--gaga-a-gaag-aa-ggagaagaaTAGCAATGCGGTTGTGACT 516
|| || | || || || | | | || |||||| || || | ||| |||||||
Sbjct 486 AGA-ACTTG-AGAAATTGATACATCTTGCAACAGAGAAG-AT-GC-AGGCGCCTGTGACT 540
Query 517 GTTTCTG---AGACAAGTACTATGGCTAATCAGATGGTATTGAAAAAGAAAAAT-C--CT 570
||||||| | ||| |||||| ||| |||||||||||| || ||||||| || | ||
Sbjct 541 GTTTCTGATCATACAGGTACTACGGCCAATCAGATGGTAACGATAAAGAAAGATCCTTCT 600
Query 571 TTTCAACAATTGAA-ATTCTTTTGGGTTAATTTGGATGACAAGACTAAAA-GGGATTTTT 628
||| | | |||||| | |||||||||||| |||||||||||||| |||| |||| ||||
Sbjct 601 TTTGATCGATTGAAGA-ACTTTTGGGTTAAATTGGATGACAAGACCAAAAGGGGA-TTTT 658
Query 629 TGGTAGTAGACTTTCGAAAGCTTATTGAATATATTCAGAATGAGTATGGCAAGGAAGTAA 688
||||||||||||||||||| ||||| | ||||| ||||| || |||| | | ||||||
Sbjct 659 TGGTAGTAGACTTTCGAAATCTTATAGCCTATATAGAGAATAAGCATGGGACGCAAGTAA 718
Query 689 AACGATATTTTCGGAAATGTGTAATCAGC-CTCATATCA-CTTC-ATTGGAGATACTGGA 745
|| | |||||| | ||||||| || | | || || | |||| | ||||||| |||||
Sbjct 719 AAAAACATTTTCAGCTATGTGTACCCATCGC-CA-ATAATCTTCGA-TGGAGATGCTGGA 775
Query 746 AGTGCCACATTTGTTCTCAGGTTAACTACTGTTTTACAGATTGCAAGATGCACATCTTAG 805
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 AATGCCACATTTGTTCTCAGGTAAACTACTGTTTTACAGATTGCAAGATGCACATCTTAG 835
Query 806 ATAAGCATGTGCACAAATATGAACCCGAGTTCAGTGATCGTCCTAAGTATGTGGATGAGA 865
|||| |||||||||| || ||||||| | ||||||| |||||||||||||||||||||||
Sbjct 836 ATAACCATGTGCACACATCTGAACCCAAATTCAGTGCTCGTCCTAAGTATGTGGATGAGA 895
Query 866 TTTTGGCTGACATGATATGCTGTGGGGATTGGAAGCCAGTGGATATAGCGCAGGCAGCAA 925
|||||||||||||||||||||||||||||||||||||||| |||| || | |||||||||
Sbjct 896 TTTTGGCTGACATGATATGCTGTGGGGATTGGAAGCCAGTTGATACAGAGAAGGCAGCAA 955
Query 926 ATCTGATTAATGATAGAATTAAGAGCCAGAAAGAGTTTGTTTATGTTAATGGATGGTGTA 985
||||||| || ||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 956 ATCTGATCAAGGATAGAACTAAGAGCCGGAAAGAGTTAGTTTATGTTAATGGATGGTGTA 1015
Query 986 GTGA 989
||||
Sbjct 1016 GTGA 1019
> Ahg934020 jgi|Araly1|934020|scaffold_402008.1
Length=2189
Score = 1253 bits (678), Expect = 0.0
Identities = 1015/1170 (87%), Gaps = 53/1170 (5%)
Strand=Plus/Plus
Query 987 TGATTGGCCTGTAGCG-GGTGATGAAAAGCG--GGAAACCATTCTCAAACAGTTTTCTGA 1043
||||||||||| || | | |||||| |||| ||||| || |||||||||||| || |
Sbjct 927 TGATTGGCCTGAAGTGAAG-GATGAAGAGCGAAGGAAA--ATACTCAAACAGTTTGCTCA 983
Query 1044 GGTTCTTAAAGCTTCTTGCCCTAGGGAGAATTG-TACTCTTTCATGTACCCTTTGGGACT 1102
|||||||||| |||||| | || || || || ||||||||||||||||||||||||||
Sbjct 984 GGTTCTTAAATCTTCTTTCTGTAATGACAA-TGATACTCTTTCATGTACCCTTTGGGACT 1042
Query 1103 GGTTGATCGATTACACAG-AAGAGCATCTGGATCTACCTGG-AGTTTCC-GGGAGCTATC 1159
||||||| |||||||||| ||| | ||||| | ||| |||| || |||| ||||||||||
Sbjct 1043 GGTTGATAGATTACACAGAAAG-GAATCTGCAACTA-CTGGAAG-TTCCTGGGAGCTATC 1099
Query 1160 TTGATAAATGTAGCTTCTTTAAGAACCCTCAGTGCATCTGCTTCTTAGATCTTAAGCACC 1219
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TTGATAAATGTGGCTTCTTTAAGAACCCTCAGTGCATCTGCTTCTTAGATCTTAAGCACC 1159
Query 1220 TTAAACACATCCTCAAAAAATTTAGCCAGCTCACCACTGATGTCCGCGAAAGTTTGGTTT 1279
|| |||||||||||||| | ||||| ||||||||||| ||||| |||| ||||| |||
Sbjct 1160 TTGAACACATCCTCAAATATTTTAGACAGCTCACCACAGATGTTCGCGCGAGTTTAGTTC 1219
Query 1280 CAAAAGTAGTGAATCAGCT-CTGGGAAAATTCCCTGGTCAAGGAAAGACTCGATCTTGAG 1338
|||||||||||||| | | |||| |||| || | ||||||||||| | ||| |||||||
Sbjct 1220 CAAAAGTAGTGAATT-GTTTCTGGAAAAACTCACGGGTCAAGGAAACAATCGGTCTTGAG 1278
Query 1339 GGACACACTAATTCTAATCTGCTTCTGGATAAGAGACTGCTGTGTGAAGAAGAGCTTGAA 1398
||| || | || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1279 AGACTTAC-A-TT-TAATCTGCTTCTGGATGGGAGACTGCTGTGTGAAGAAGAGCTTGAA 1335
Query 1399 TTGGATCAGA-ATGAGACAGTAGAGCATTATGAATCCACTGGCA-TTTATGAGGATGTGA 1456
| ||| ||| | | |||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1336 TCAGATAAGATAGG-GACAGTAGAGCATTATAAATCCACTG-CAATTTATGAGGATGTGA 1393
Query 1457 TGCCTAAGGGTGATAAGATAGTCTCTTGGATTCTTGACTGCCCAAAAATCGATAAGGAAT 1516
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1394 TGCCTAAGGGTGATAAGATCGTCTCTTGGATTCTTGACTGCCCAGAAATCGATCTGGAAT 1453
Query 1517 TTATGTCTCAAATGGCAAAGGTGGCAAAGGGCTTACACAATCGTGAGATATGGTTAGCAG 1576
|| |||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1454 TTGTGTCTCAAATGGCAAA-----C---GG-CTTACACAATCGTGAGATATGGTTAGCAG 1504
Query 1577 TTTTGAGAATCGTAC-AGGGCCTGGTTAGGAAAAAGGAAAGCTACTATGATAAGCGACGG 1635
||||||||| |||| ||| | |||||||||| ||||||||||||||||||||| |||
Sbjct 1505 CTTTGAGAATAGTACGAGG-CATGGTTAGGAACAAGGAAAGCTACTATGATAAGAGACAC 1563
Query 1636 AAGATGCTAAGCTATGAGAAGATGTTGTGTGAGGTTGAGACCATTTGTGACAGAGAAGAC 1695
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1564 AAGATGCTAACCTATGAGAAGATGTTGTGTGAGGCAGAGACCATTTGTGACAGAGAAGAC 1623
Query 1696 ACTAGGAAGAATGTTAATCAGCGGAGCACATATGAGTTTGCGCTTCGAACGGAATGTGAG 1755
||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 1624 ACTAGAAAGAATGTTAATCAGCGGAGCACATATGAGTTTGCACTTCGAATGAAATGTGAG 1683
Query 1756 AAGCTTGTAGGTAAGCAAGATGATAATAGAAAATATTTCTGGACTGTTGTAAAAGATGTT 1815
||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||||
Sbjct 1684 GAGCTTGTAGGTAAGCAAGATGATGATACAAAATGTTTCTTGACTGTTGTAAGAGATGTT 1743
Query 1816 TTTGTAA-AACTATGCCCTCCA-GTATTTGGCGTATTAGAAGATATGGAG---TGTATAT 1870
||| || || | || ||||| || |||| |||| |||||||| |||| |||||||
Sbjct 1744 TTTCAAAGAAAAA-GCTCTCCAAGT-TTTGAAGTATCAGAAGATAAGGAGGAGTGTATAT 1801
Query 1871 CCAAACTCTCTGCTACTGTCTCAAATGATGAAGTTAAGAAAAGTATGTTGAGGTTAAGGA 1930
||||||||||| |||||||| |||||||||| |||||||||||| ||| || | ||| ||
Sbjct 1802 CCAAACTCTCTACTACTGTCCCAAATGATGATGTTAAGAAAAGTCTGTGGACGCTAAAGA 1861
Query 1931 AATCGT-TGAAAGA-GATGTTCCTTTTGATTGATTCAAAGATTTTGCGGAACGAA-TGCA 1987
|||| | |||| || || ||||| |||||||||||| ||||||||||||||| || | |
Sbjct 1862 AATC-TCTGAA-GAAGAAGTTCCCTTTGATTGATTCGAAGATTTTGCGGAAC-AAGT-CT 1917
Query 1988 -CATACAAAAAGCTAATAGATGTATTCCCAAAGCTATCAGTTGTTGAGTATCGCTTGGTG 2046
| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1918 GCGTACAAAAAGCTAATATATGTATTCCCAAAGCTATCAGCAGTTGAGTATCGCTTGGTG 1977
Query 2047 GTCCTTCCGCTT-GTGAAGAAGTTCTTACAGGATAAACTGAA-AAAGATGATGGAAACAA 2104
||||||||| || ||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 1978 GTCCTTCCG-TTCGTGAAGAAGTTCTTACAGGATAAACTGAAGAAA-ATGATGAAAACAA 2035
Query 2105 ATAGCAATTCAGTTGCTGCAGGAGATTCTG 2134
|||||| ||||||||||||||| | |||||
Sbjct 2036 ATAGCAGTTCAGTTGCTGCAGGCGGTTCTG 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88712180605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5