BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34260.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg934024 jgi|Araly1|934024|scaffold_402012.1 1629 0.0 Ahg887315 jgi|Araly1|887315|Al_scaffold_0813_1 1037 0.0 > Ahg934024 jgi|Araly1|934024|scaffold_402012.1 Length=1085 Score = 1629 bits (882), Expect = 0.0 Identities = 1021/1085 (94%), Gaps = 22/1085 (2%) Strand=Plus/Plus Query 51 ATGGAGATCGATTTGGGAGCTAACGCGTTTGGTATCGACTTCCATCCATCGACGAATCTA 110 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 21 ATGGAGATCGATTTGGGAGCGAACGCGTTCGGTATCGACTTCCATCCATCGACGAATCTA 80 Query 111 GTAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCTTCA 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 81 ATAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCCTCA 140 Query 171 CTTGTCAGGGAACGTAAAGTTCGTGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 230 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 141 CTTGTCAGGGAACGTAAAGTTCGAGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 200 Query 231 GATGATGGCCAAAGAATCGTCACTGCTTCAGCTGATTGTTCAATTCTAGCAACTGATGTA 290 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 201 GATGATGGCCAAAGAATCGTCACAGCTTCAGCTGATTGCTCAATTCTAGCCACTGATGTA 260 Query 291 GAGACTGGTGCGCAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 350 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 GAGACTGGTGCTAAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 320 Query 351 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGATTTGG 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 321 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGGTTTGG 380 Query 411 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 440 Query 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530 ||||||||||| |||||||||||||||||| || |||||||||| || ||||| Sbjct 441 ATGACCTTTGCGTCTGATTCAATGAAGCTA---GT-----GTGGAGACGGTACCCTGTCT 492 Query 531 GTCTGTAATCTTAGAAC-GAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACT 589 |||||| |||| || || |||||||| ||||||||||| | |||||||||||| ||||| Sbjct 493 GTCTGT-ATCTCAG-ACAAAGTAAGGTGCAATCTCAGTCTG-ATTTTCTGAAGACGAACT 549 Query 590 ACTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTAC 649 |||||| || | ||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 550 ACTTTC---TG-T-TAA--AA-AATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTAC 601 Query 650 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGC 709 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 602 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGC 661 Query 710 TCCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGA 769 ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 662 TCCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGA 721 Query 770 TAATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTC 829 |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 722 TAATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCAATAGGGGC 781 Query 830 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCAC 889 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 782 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCAC 841 Query 890 AGCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGT 949 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 842 AGCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGG 901 Query 950 CAACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGA 1009 |||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||| Sbjct 902 CAACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGA 961 Query 1010 CCTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAG 1068 ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| Sbjct 962 CCTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAC 1020 Query 1069 CGAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGATTC 1128 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1021 CGAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGTTTC 1080 Query 1129 AGTCT 1133 ||||| Sbjct 1081 AGTCT 1085 > Ahg887315 jgi|Araly1|887315|Al_scaffold_0813_1 Length=642 Score = 1037 bits (561), Expect = 0.0 Identities = 616/643 (96%), Gaps = 2/643 (0%) Strand=Plus/Plus Query 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530 ||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| Sbjct 1 ATGACCTTTGCGTCTGATTCAATGAAGCTAGTGGCAACAAGTGGAGACGGTACCCTGTCT 60 Query 531 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACTA 590 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 61 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCTGAATTTTCTGAAGACGAACTA 120 Query 591 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTACT 650 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTACT 180 Query 651 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGCT 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGCT 240 Query 711 CCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGAT 770 |||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 241 CCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGAT 300 Query 771 AATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 830 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 360 Query 831 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCACA 890 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCACA 420 Query 891 GCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGTC 950 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 421 GCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGGC 480 Query 951 AACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGAC 1010 ||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct 481 AACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGAC 540 Query 1011 CTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAGC 1069 |||||||||||| || | |||||||||||||||||||||||||||||||||||||||| | Sbjct 541 CTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAACC 599 Query 1070 GAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAG 1112 ||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 600 GAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAG 642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5