BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34260.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934024 jgi|Araly1|934024|scaffold_402012.1 1629 0.0
Ahg887315 jgi|Araly1|887315|Al_scaffold_0813_1 1037 0.0
> Ahg934024 jgi|Araly1|934024|scaffold_402012.1
Length=1085
Score = 1629 bits (882), Expect = 0.0
Identities = 1021/1085 (94%), Gaps = 22/1085 (2%)
Strand=Plus/Plus
Query 51 ATGGAGATCGATTTGGGAGCTAACGCGTTTGGTATCGACTTCCATCCATCGACGAATCTA 110
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 21 ATGGAGATCGATTTGGGAGCGAACGCGTTCGGTATCGACTTCCATCCATCGACGAATCTA 80
Query 111 GTAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCTTCA 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 81 ATAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCCTCA 140
Query 171 CTTGTCAGGGAACGTAAAGTTCGTGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 230
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 141 CTTGTCAGGGAACGTAAAGTTCGAGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 200
Query 231 GATGATGGCCAAAGAATCGTCACTGCTTCAGCTGATTGTTCAATTCTAGCAACTGATGTA 290
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 201 GATGATGGCCAAAGAATCGTCACAGCTTCAGCTGATTGCTCAATTCTAGCCACTGATGTA 260
Query 291 GAGACTGGTGCGCAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 350
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GAGACTGGTGCTAAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 320
Query 351 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGATTTGG 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 321 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGGTTTGG 380
Query 411 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 440
Query 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530
||||||||||| |||||||||||||||||| || |||||||||| || |||||
Sbjct 441 ATGACCTTTGCGTCTGATTCAATGAAGCTA---GT-----GTGGAGACGGTACCCTGTCT 492
Query 531 GTCTGTAATCTTAGAAC-GAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACT 589
|||||| |||| || || |||||||| ||||||||||| | |||||||||||| |||||
Sbjct 493 GTCTGT-ATCTCAG-ACAAAGTAAGGTGCAATCTCAGTCTG-ATTTTCTGAAGACGAACT 549
Query 590 ACTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTAC 649
|||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 550 ACTTTC---TG-T-TAA--AA-AATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTAC 601
Query 650 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGC 661
Query 710 TCCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGA 769
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 662 TCCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGA 721
Query 770 TAATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTC 829
|||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 722 TAATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCAATAGGGGC 781
Query 830 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCAC 889
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 782 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCAC 841
Query 890 AGCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGT 949
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 842 AGCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGG 901
Query 950 CAACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGA 1009
|||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 902 CAACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGA 961
Query 1010 CCTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAG 1068
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CCTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAC 1020
Query 1069 CGAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGATTC 1128
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 CGAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGTTTC 1080
Query 1129 AGTCT 1133
|||||
Sbjct 1081 AGTCT 1085
> Ahg887315 jgi|Araly1|887315|Al_scaffold_0813_1
Length=642
Score = 1037 bits (561), Expect = 0.0
Identities = 616/643 (96%), Gaps = 2/643 (0%)
Strand=Plus/Plus
Query 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530
||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1 ATGACCTTTGCGTCTGATTCAATGAAGCTAGTGGCAACAAGTGGAGACGGTACCCTGTCT 60
Query 531 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACTA 590
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 GTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCTGAATTTTCTGAAGACGAACTA 120
Query 591 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTACT 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTACT 180
Query 651 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGCT 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGCT 240
Query 711 CCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGAT 770
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGAT 300
Query 771 AATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 830
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCA 360
Query 831 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCACA 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCACA 420
Query 891 GCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGTC 950
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 421 GCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGGC 480
Query 951 AACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGAC 1010
||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 481 AACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGAC 540
Query 1011 CTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAGC 1069
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAACC 599
Query 1070 GAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAG 1112
||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 600 GAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5