BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34270.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359729 jgi|Araly1|359729|fgenesh1_pg.C_scaffold_813000002 350 2e-95
> Ahg359729 jgi|Araly1|359729|fgenesh1_pg.C_scaffold_813000002
Length=444
Score = 350 bits (189), Expect = 2e-95
Identities = 228/247 (92%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 393 GACTAAGACTCGGTTCCACAAGGCTTTGCAA-AAGGAATCATCATCTTCTTCAATGAAAT 451
|||| || |||||||||| ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct 159 GACTGAGTCTCGGTTCCAGGAGGCTTTGCAAGAA-GAATCGTCATCCTCTTCAGTGAAAT 217
Query 452 GGGGTTTTACAGAGGCTAAAGATGAAGTACTTTCTCTTGGGATCAGGTTAACTCATGCGC 511
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 218 GGGGTTTTGCAGAGGCTAAAGATGAAGTAGTTTCTCTTGGGATCAGGTTAACTCATGCGC 277
Query 512 TCATCAAACTCACGTTATTGCGTGTTAAGAAGAACGACAGAGAGAAACAGTTGTTGCTAA 571
|||||||||||||||||||||||||| | |||||||| |||||||||||||||| |||||
Sbjct 278 TCATCAAACTCACGTTATTGCGTGTTCATAAGAACGAGAGAGAGAAACAGTTGTGGCTAA 337
Query 572 GAGATTGGATCTTTGATGAGTCTTACGAGAAACAATCTGCTTTAATGTACTTGTTGGACT 631
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 338 GAAATTGGATCTTTGGGGAGTCTTACAAGAAACAATCTGCTTTAATGTACTTGTTGGACT 397
Query 632 ATCTTCT 638
|||||||
Sbjct 398 ATCTTCT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5