BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34280.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901256 jgi|Araly1|901256|Al_scaffold_0004_1906 704 0.0
Ahg487863 jgi|Araly1|487863|fgenesh2_kg.6__997__AT5G10340.1 364 9e-100
> Ahg901256 jgi|Araly1|901256|Al_scaffold_0004_1906
Length=1080
Score = 704 bits (381), Expect = 0.0
Identities = 498/551 (90%), Gaps = 21/551 (4%)
Strand=Plus/Plus
Query 328 ATGGACTTGCTACCCTACGATGTTGTGGAGCATATTCTGGAGAGACTTGATGTGAAATCC 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGACTTGCTACCCTACGATGTTGTGGAGCATATTCTGGAGAGACTTGATGTGAAAACC 60
Query 388 TTGCTCAACTGCAAGTCCGTATCGAAGCAATGGAGATCTACAATCCGATGCCGTGCTTTC 447
|||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 61 TTGCTCAAGTTCAAGTTCGTATCGAAGCAATGGAAATCTACAATCCAATGCCGTGCTTTC 120
Query 448 CAAGAAAGACAACTGATGCATCGTAGGCAATCATGTAATCCAGATGTCCTTTTGGTATCC 507
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CAAGAAAGACAACTGATGCATCGTAGGCAATCAGGTAATCCAGATGTCCTTTTGGTATCC 180
Query 508 GTA-GCTGATGAATTTTATCTTCTTAAAAGAGTGCATCAAGTTATGAGAACGTTGGTACT 566
||| | |||||||| ||||||| || | || || | ||| |||||||||||||||| |
Sbjct 181 GTATG-TGATGAATCTTATCTTATTGGTACAGAGCTTGAAGCTATGAGAACGTTGGTAGT 239
Query 567 GGGTTCATCAGTTTCTGTTAGGATCCTTACTCCTTGGGAAGACACATTGTACAAAGTTTG 626
||| ||||||||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct 240 GGGGTCATCAGTTTCGGTTAGGATCCTTACTCCTTGGGAAAAAACCTTGTACAAAGTTTG 299
Query 627 CCAGAGTAGCTGTGACGGCCTGATATGCCTCTACAAT-ACCTATGCTTCGAATATTGTTG 685
||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct 300 CCAGAGTAGCTGTGACGGCCTGATATGCCTCTACAATGAC-TATCCTAAGAATATTGTTG 358
Query 686 TTAATCCCACCACTCGATGGCATCGAGAATT-CCCTCTTTCTACCTTTCAACGACTCGAT 744
|||||||||||||||||||||||||| | || ||||| |||||||| |||||||||| |
Sbjct 359 TTAATCCCACCACTCGATGGCATCGA-ACTTTCCCTCGTTCTACCTATCAACGACTC-A- 415
Query 745 CGTTATGAACACCAGGTCGGTTCAGTATCATGGGCTAAGCTTGGATTCGGTAAAGACAAA 804
| | | | || | || || ||||||||||||||||||||||||||||||||||
Sbjct 416 C-T-A-GT-CA-----T-GG---AGAATCATGGGCTAAGCTTGGATTCGGTAAAGACAAA 462
Query 805 ATCAATGGCACATACAAGCCAGTTTGGTTATATAATTCTGCTGAATTAGGCGGCCTTAAC 864
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 463 ATCAATGGCACATACAAGCCAGTTTGGTTATACAATTCTGCTGAATTAGGCGGCCTTAAC 522
Query 865 GATGACGACGA 875
|||||||||||
Sbjct 523 GATGACGACGA 533
Score = 399 bits (216), Expect = 2e-110
Identities = 240/252 (95%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 924 CAACAACAACACTAGTACTTTTTGTGAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTT 983
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 534 CAACAACAACACTAGTACTATTTGTGAAGTTTTTGATTTTACCTCCAAGGCTTGGAGGTA 593
Query 984 TGTTGTCCCGGCGTCCCCCTACCGGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 1043
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 TGTTGTCCCCGCGTCCCCCTACCCGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 653
Query 1044 GTCACTTCATTGGCTCACTGAGGGTGAAACCACCAATGTTTTGTCTTTCGATCTTCATGC 1103
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 654 GTCACTTCATTGGCTCACTGCGGGTGAAACCACCAATGTTTTGTCTTTTGATCTTCATAC 713
Query 1104 CGAAACTTTCCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCACGACTACTCTAGTAG 1163
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 714 CGAAACTTTCCAAGTCATGTCTAAAGCTCCCTTTCTCCACCACCACGACCACTCTAATAG 773
Query 1164 AGAGTTGATCAT 1175
||||||| ||||
Sbjct 774 AGAGTTGGTCAT 785
Score = 370 bits (200), Expect = 2e-101
Identities = 272/305 (89%), Gaps = 11/305 (4%)
Strand=Plus/Plus
Query 1204 TCAGAAAAAATGTGGCCCAACCAAGTGATATGGTCGTTGGATTCAGATCACAAGACATGG 1263
||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 782 TCATAAAAAA-ATGGCCCAACCAAGTGATATGGTCGTTGGATTCAGACCACAAGACATGG 840
Query 1264 AAGGAAATATATTCCATAGATCTCAATATAACTTCTTCTTTG-TTTGGGA-GTAATGGAT 1321
||||||||||||||||||||||||||||||||||||| |||| ||||||| | | | |||
Sbjct 841 AAGGAAATATATTCCATAGATCTCAATATAACTTCTT-TTTGGTTTGGGAAGCA-TAGAT 898
Query 1322 TCGCACTCA-GACCACTAGGAGTTTTTGACAAAGACAAGTTGTTGTTTTGTGAACCTGAA 1380
||||||||| | ||||||| |||| | |||||||||||||| ||||||||||||||| ||
Sbjct 899 TCGCACTCACG-CCACTAGCAGTTGTGGACAAAGACAAGTTATTGTTTTGTGAACCT-AA 956
Query 1381 -TACGGGGATCAATTGCTAACACATGATCCCAAAACAAAATCTTATGAATTTGATTACAG 1439
| ||| ||||||||| ||||||||||||||||||| |||||||||||||| | |||||
Sbjct 957 CTCCGGAGATCAATTGGTAACACATGATCCCAAAACCAAATCTTATGAATTAGCTTACAT 1016
Query 1440 AtttttttCCCCTACTACTGCACT-CCCTCTTTGTTATTTCCAGAGTTTAATCTCTATTT 1498
|| ||||| | |||||||||| | ||||||||||||||||||||||||| | |||||||
Sbjct 1017 ATCTTTTTATCGTACTACTGCA-TACCCTCTTTGTTATTTCCAGAGTTTACTGTCTATTT 1075
Query 1499 TGTAA 1503
|||||
Sbjct 1076 TGTAA 1080
> Ahg487863 jgi|Araly1|487863|fgenesh2_kg.6__997__AT5G10340.1
Length=1137
Score = 364 bits (197), Expect = 9e-100
Identities = 415/515 (81%), Gaps = 36/515 (7%)
Strand=Plus/Plus
Query 945 TTGTGAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTTTGTTGTCCCGGCGTCCCCCT- 1003
||||||||||||||||||| ||||||| |||||||| | || |||| || | |||||
Sbjct 579 TTGTGAAGTTTTTGATTTTGCCACCAACGCTTGGAGATACATTTTCCCTGC-TTCCCCTC 637
Query 1004 ACCGGATACTTCCTTA-CCAAGATCCTGTATATGTAGATGGGTCACTTCATTGGCTCACT 1062
| | ||| ||| | | |||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 638 ATCTGATTCTT-CACACCCAATATCCTGTTTATGTAGATGGGTCACTTCATTGGTTCACT 696
Query 1063 G-AGGGTGA-A--A---C--CACCAAT-GTTTTGTCTTTCGATCTTCA-TGCCGAAACTT 1111
| || | | | | ||| || ||||||||||| |||||||| | |||||| ||
Sbjct 697 GCCTTGTCACACGAGGGCGAAACC-ATGGTTTTGTCTTTGGATCTTCACT-CCGAAATTT 754
Query 1112 TCCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCAC-GACTACTCTAGTAGAGAGTTG 1170
|||||||| | ||||||||||||||||| || | | || | || || ||| | |
Sbjct 755 TCCAAGTCATCTCTAAAGCTCCCTTTCT-CAATGTCTCTGA-T-GAATA-TA-AGA-TCG 808
Query 1171 ATCATGTGCAACCTTGATGATCGTTTGTGCGTATCAGAA-AAAATGTGGCCCAACCAAGT 1229
||||||||||||||||||||||||||||||| || || |||| |||||||||||||||
Sbjct 809 -TCATGTGCAACCTTGATGATCGTTTGTGCGTGTCCGAGGAAAA-GTGGCCCAACCAAGT 866
Query 1230 GATATGGTCGTTGGAT--T-CAGATCACAAGACATGGAAGGAAATATATTCCATAGATCT 1286
|| |||||||||||| | |||| ||||||||||||||| |||||||||||||||||||
Sbjct 867 CATCTGGTCGTTGGATGATTCAGACCACAAGACATGGAAGCAAATATATTCCATAGATCT 926
Query 1287 CAATATAACTTCTTCTTTGTTTGGGAGTAATGGATTCGCACTCAGACCACTAGGAGTTTT 1346
|||||| |||||||||||||| |||| || |||||||| ||| |||||||| ||||||
Sbjct 927 CAATATCACTTCTTCTTTGTTCGGGATTACCAGATTCGCATTCACACCACTAGCAGTTTT 986
Query 1347 TGACAAAGACAAGTTGTTGTTTTGTGAACCTGAATACGGGGAT-CAATTGCTAACACATG 1405
||||| |||||||| ||||||| ||| | |||| |||| || || || ||||||||||
Sbjct 987 GGACAAGGACAAGTTATTGTTTTATGATCGTGAACACGGCAATGCA-TTCCTAACACATG 1045
Query 1406 ATCCCAAA-ACAAAATCTTATGAATTTGA-TTACA 1438
|||| | | || ||||||||||| |||| |||||
Sbjct 1046 ATCC-AGATACCAAATCTTATGA-TTTGCCTTACA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5