BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34310.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482373 jgi|Araly1|482373|fgenesh2_kg.4__1433__AT2G34310.3 1134 0.0
> Ahg482373 jgi|Araly1|482373|fgenesh2_kg.4__1433__AT2G34310.3
Length=1049
Score = 1134 bits (614), Expect = 0.0
Identities = 703/746 (94%), Gaps = 5/746 (1%)
Strand=Plus/Plus
Query 139 AATCCATTGATCATGCCGCCTGGTGCCAAAAAGAGAAAGGCTTTGAAGAAGAAGCAGCAG 198
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 AATCCATTGATCATGCCTCCTGGTGCCAAAAAGAGAAAGGCTTTGAAGAAGAAGCAGCAG 159
Query 199 GAGCAGGAAGCCACTGGAGTCGCTACCAACAACAAAGGCTTCAATGGTCATGGACATGAT 258
|||||||||||| |||||| || ||| ||||||||||||||||||||| |||||||||||
Sbjct 160 GAGCAGGAAGCCGCTGGAGCCGGTACTAACAACAAAGGCTTCAATGGTGATGGACATGAT 219
Query 259 GAACATGGAAGCCAAGATGAGAGAGACAGTGATGGCAATTTGAGTTCCCCTGGATCTCAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 220 GAACATGGAAGCCAAGATGAGAGAGACAGTGATGGCAATTTGAGTTCCCCTGGTTCTCAA 279
Query 319 GGAAATGAAGAATTTGGGACTAGAGATC-CATCACCTCCTCCATTATCTAGTTTAGGGAA 377
|||||||||||||||||||| | ||| | |||||||||||||||||||| ||||||||||
Sbjct 280 GGAAATGAAGAATTTGGGACAATAGA-CTCATCACCTCCTCCATTATCTGGTTTAGGGAA 338
Query 378 AGACATTGTTAAAGAGAAAGCAGAAGATGCAGACTTTACTGGGGGACAAGTAGCGAAAGG 437
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 339 GGACATTGTTAAAGAGAAAGCAGAAGATGCTGACTTTACTCGGGGACAAGTAGCGAAAGG 398
Query 438 TGAAGACGTTATTGAAGTTGGAAGAGGAAGAACGGATCACGAGGAGAATGGTGTAAACAA 497
|||||||||||||| |||||||||| | |||||||||| |||||||| ||||| ||||
Sbjct 399 TGAAGACGTTATTGCAGTTGGAAGA-G--GAACGGATCATGAGGAGAACGGTGTGGACAA 455
Query 498 ACAACTCAATTCCTGTCCTGAAAATTTTACTCAAACTTCTAGAGAGGCTGATAGTACTTC 557
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 ACAACCCAATTCCTGTCCTGATAATTTTACTCAAACTTCTAGAGAGGCTGATAGTACTTC 515
Query 558 AAGTTTGGAAATTTCACCTGCTCTTGATTCTGTCAAGCCTATGGGTTCTTCTGTCTCAAA 617
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 516 AAGTTTGGAAATTTCACCTGCTCTTGATTCTGTCAAGCCTGTGGGTTCTTCTGTCTCAAA 575
Query 618 AGTTGTGATGTCTGACAAAAGTAAGCAAGTTGAGAGTTCGACGGACTCGGATTCTCTCCA 677
||||||||||||||||||| | ||||||||||||| || || | || ||||||||||||
Sbjct 576 GGTTGTGATGTCTGACAAAAATGAGCAAGTTGAGAGCTCAACAGTCTTGGATTCTCTCCA 635
Query 678 ACAGAAGTCTGATGAAAAGGAAGAGATCCTTAGTCCAAGATCTGCTGAGGAAACTAACAA 737
|||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 636 ACAGAAGTCTGATGAAAACGAAGAGAACCTTAGTCCAGGATCTACTGAGGAAACTAACAA 695
Query 738 AGAAATCAAGAATGTGAAAGAATATGAAGTGCCAGAATGTTCTAAAGAAAAGAGTCTTTT 797
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 696 AGAAGTCAAGAATGTGAAAGAAAATGAAGTGCCAGAATGTTCTAAAGAAAAGAGTCTTTT 755
Query 798 GCCTTCTGGTCCACCAGTTTTTCGAACGTCGTGGTTGAGTTGCTGCGGTTTGTTTGATGT 857
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 756 GCCTTCTGGTCCACCAGTTGTTCGAACCTCGTGGTTGAGTTGCTGCGGTTTGTTTGATGT 815
Query 858 AATGGCAGGATCTGAAAGATAAATAC 883
|||||||||||||||||||||| |||
Sbjct 816 AATGGCAGGATCTGAAAGATAAGTAC 841
Score = 148 bits (80), Expect = 7e-35
Identities = 88/92 (96%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1014 GAGGAGGATAAAATTGCAAACAGTGAACAGCAGAAGCTCAAAGAACAGCCGACAATACAT 1073
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 844 GAGGAGGATAAAATAGCAAATAGTGAACAGCAGAAGCTCAAAGAACAGCCGACAAAACAG 903
Query 1074 GATTCATGGTCTGTAGATTCTTCTCTGTACAA 1105
||||||||||||||||||||||||||||||||
Sbjct 904 GATTCATGGTCTGTAGATTCTTCTCTGTACAA 935
Score = 97.1 bits (52), Expect = 3e-19
Identities = 67/74 (91%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 1 AAGGAGAGAA-ACAACTCCACCCACATCACACAAACCAACAAACCCACAAGCTCCATAAA 59
||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 27 AAGGAGA-AACTCAACTCCACCCACATCACACAAACCAACAAACCCACAAGCTCCAGATA 85
Query 60 TCTTTCAAGTGAAC 73
||||| |||||||
Sbjct 86 TCTTTGGAGTGAAC 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5