BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34315.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901259 jgi|Araly1|901259|Al_scaffold_0004_1909 588 2e-167
> Ahg901259 jgi|Araly1|901259|Al_scaffold_0004_1909
Length=624
Score = 588 bits (318), Expect = 2e-167
Identities = 448/506 (89%), Gaps = 28/506 (6%)
Strand=Plus/Plus
Query 241 AATATGGCTGATCAGGAACTGCCACCCTCCGTTACAAG-CATAGTTCTAGTAGGGCGTAA 299
|||||||||| || |||| || ||||||||||| || |||||||||||||||||
Sbjct 142 AATATGGCTGCTCGGGAATTG---CCCTCCGTTAC-AGATATAGTTCTAGTAGGGCG--- 194
Query 300 TAATGGCAATGGAAAAAGCTTCACTGGAAACACCCTCCTCGGTGAAAAACTCTTCATATC 359
||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 195 TAATGGCAATGGAAAGAGCTTCACCGGAAACACCCTCCTTGGTGAAAAACTCGACATATC 254
Query 360 CAAAGCAGATGCAGGAGGTGTTACCATGGAAGAAGACGATAAGCTCAAGGAAAAAGAAAG 419
||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 255 AAAAGCAGATGCAGGAGGTGTTACCATGGAAGAAAATGATAAGCTCAAGGAAAAAAAAAG 314
Query 420 GGAGATCGAATCTAAGAGCCTTGCGGAAGCAGAGGTAATTGCAATGAAAGAG-AGGTCAC 478
||| |||||||||||||||||| |||||||||||||||| || ||||||||| | |||||
Sbjct 315 GGAAATCGAATCTAAGAGCCTTTCGGAAGCAGAGGTAATAGCGATGAAAGAGCA-GTCAC 373
Query 479 GGAAGGAGCATGACCATACTATG-A-AT-ATGGCACACGAAGAAGTGGAGCATGCGCTAA 535
||| ||||||||| ||||||||| | || ||||||||| |||||||||||||||||||
Sbjct 374 GGATGGAGCATGAGCATACTATGAATATGATGGCACAC---GAAGTGGAGCATGCGCTAA 430
Query 536 AACAAAATACGGAAACACATGAAAAAGAGACGCAGCATCATGTGATTGATGTCTCCGACA 595
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 431 AACAAAATGCGGAAACACATGAAGAAGAGACGCAGCATCATGTGATTGATGTCTCCGA-A 489
Query 596 GTACTGCCGATGAAGTAGTAATAAAAGATCGACCACATAGGTTTGGTGTGATTGTTTCAC 655
||||| | | | || |||||||||| |||||||||||||||||||||||| |||
Sbjct 490 GTACT----A--A--T--TA-TAAAAGATCGGCCACATAGGTTTGGTGTGATTGTTGCAC 538
Query 656 AACTTTTAAATCATCATCTACTACTGTTTTGTGTGTTTTATTGCTTTTGCTTCTTCTACT 715
|||||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 539 AACTTTCAAATCATCATCTACTACTGTTTTGTATGTTCTATTGTTTTTGTTTCTTCTACT 598
Query 716 TTTGCATTTTCCCAACTCTACTGTAA 741
||||||||||||||||||| |||||
Sbjct 599 TTTGCATTTTCCCAACTCTTTTGTAA 624
Score = 174 bits (94), Expect = 7e-43
Identities = 118/129 (91%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 1 ATGGATACGTGCATGCAGGAATTAATTGCTGGTGATCAGAATATGGCTGATCAAGACTTT 60
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1 ATGGGTACGTGCATGCAGGAATTAATTGCTGGTGATCAGAATATCGCTGATCAGGAATTG 60
Query 61 CCCTCCGTTATA-A-A--CATAGTTCTTCTAGTCAAGCTTCTGGACCATGTTGCAGCTAC 116
|||||||||||| | | |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 61 CCCTCCGTTATATATAAACATAGTTCTTGTAGTCAAGCTTCTGGACCATGTTGTAGCTAC 120
Query 117 TCAAAACCA 125
|||||||||
Sbjct 121 TCAAAACCA 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5