BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34330.1 Length=863 Score E Sequences producing significant alignments: (Bits) Value Ahg482376 jgi|Araly1|482376|fgenesh2_kg.4__1436__AT2G34330.1 774 0.0 Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014 230 2e-59 > Ahg482376 jgi|Araly1|482376|fgenesh2_kg.4__1436__AT2G34330.1 Length=750 Score = 774 bits (419), Expect = 0.0 Identities = 479/506 (95%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 25 TCTGTCTCCTTCT-TCTTCTTACATTCTCTCt-tt-ttttCTACAAACAGAGGAAAACAA 81 ||||||| ||| | |||||||||||||||||| || ||| || ||| |||||||||||| Sbjct 1 TCTGTCT-CTTTTCTCTTCTTACATTCTCTCTGTTATTTGCT--AAAGAGAGGAAAACAA 57 Query 82 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 117 Query 142 TAGGAAACTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAA 201 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 118 TAGGAAACTCCTGATCAGAATCACCAAGAGTTGTCCCCGACGTCATAACCGGCATTTGAA 177 Query 202 ACTCAAGAAAGCCTCTTCTTCTTCTTCTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 261 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 178 ACTCAAGAAAGCCTCTTCTTCTTCTACTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 237 Query 262 GGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 321 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 GGCTTTGTTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 297 Query 322 TAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAAGCA 381 |||||||||||||||||||| |||||||||| ||||||||||||| | | |||||||| Sbjct 298 CAACGAACTCAGGAGCTTCTCTCACGCAGTCAGTGACCAGAAGAAG--GTC-CCAAAGCA 354 Query 382 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGTCAAGGAAA 441 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 355 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGCCAAGGAAA 414 Query 442 GGGTAATAACAACAACACGCAGGAAGTCCCTCAAGAACATGATGCACGTAGAGACAGCAC 501 |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 415 GGGTAA---CAACAACACGCAGGAAGTCCCGCAAGAACACGATGCACGTAGAGACAGCAC 471 Query 502 AAGCGCATTCATTCCTTGATTTTCAA 527 |||||||||||||||||||||||||| Sbjct 472 AAGCGCATTCATTCCTTGATTTTCAA 497 Score = 189 bits (102), Expect = 3e-47 Identities = 141/158 (89%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 700 TTTGCATATGATTTTTGTAATGGAGTTAA-ATATAATATTAGAATCATCATCAAAATAAA 758 ||||||| || | |||||||||||||||| |||||||||||| | |||||| || ||| Sbjct 600 TTTGCAT-TG-TGTTTGTAATGGAGTTAACATATAATATTAG-A--ATCATC--AAGAAA 652 Query 759 CGATTGTAATATCAAGAATCCAAATAATATAGGAAACAGA-AA-GATAAGAAGATAGACA 816 |||||||||||||||||||||||||||||| | ||||||| || || ||||||||||||| Sbjct 653 CGATTGTAATATCAAGAATCCAAATAATATCGAAAACAGAGAAAGAGAAGAAGATAGACA 712 Query 817 TTGAAAATTTATACATCTATCCTACAAGCACGGACCAA 854 |||||| ||||||||||||||||| ||||||||||||| Sbjct 713 TTGAAATTTTATACATCTATCCTAAAAGCACGGACCAA 750 > Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014 Length=489 Score = 230 bits (124), Expect = 2e-59 Identities = 224/270 (83%), Gaps = 16/270 (6%) Strand=Plus/Plus Query 146 AAA-CTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAAAC- 203 ||| |||||||| |||||||||| |||||||||| |||| ||| |||||||||| |||| Sbjct 138 AAATCTCCTGATAAGAATCACCAGGAGCTGTCCCAGACGACATTACCGGCATTTGAAACT 197 Query 204 TCAAGAAAGCCTCTTCTTCTTCTTC-T-A-C-TGCTTCAGGGAA-CAAGGTCACCAAAGT 258 || ||||||| |||||||| ||||| | | | | | || ||||| ||||| ||||||||| Sbjct 198 TC-AGAAAGCGTCTTCTTCCTCTTCATCATCAT-CATCTGGGAAGCAAGG-CACCAAAGT 254 Query 259 GGTGGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCG 318 | |||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 255 GTTGGCTTCGTTCTTCCTCTCCTTCCAAAAGAAGAAGCAAAAGAAGGAGAAGATGAAGCG 314 Query 319 GCTTAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAA 378 |||||||||||||||||| |||||| | || |||| ||| | | | |||||| |||| Sbjct 315 GCTTAACGAACTCAGGAGTTTCTCGGATGCCGTCAGTGA--A-A-G--GAAGGCGTCAAA 368 Query 379 GCAAGAATCAAGCAAGAAAGTTTTCCCATC 408 | |||||||| ||||| || |||||||| Sbjct 369 TCCTGAATCAAGAAAGAAGGTATTCCCATC 398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31947004446 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5