BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34330.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482376 jgi|Araly1|482376|fgenesh2_kg.4__1436__AT2G34330.1 774 0.0
Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014 230 2e-59
> Ahg482376 jgi|Araly1|482376|fgenesh2_kg.4__1436__AT2G34330.1
Length=750
Score = 774 bits (419), Expect = 0.0
Identities = 479/506 (95%), Gaps = 12/506 (2%)
Strand=Plus/Plus
Query 25 TCTGTCTCCTTCT-TCTTCTTACATTCTCTCt-tt-ttttCTACAAACAGAGGAAAACAA 81
||||||| ||| | |||||||||||||||||| || ||| || ||| ||||||||||||
Sbjct 1 TCTGTCT-CTTTTCTCTTCTTACATTCTCTCTGTTATTTGCT--AAAGAGAGGAAAACAA 57
Query 82 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 117
Query 142 TAGGAAACTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAA 201
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 118 TAGGAAACTCCTGATCAGAATCACCAAGAGTTGTCCCCGACGTCATAACCGGCATTTGAA 177
Query 202 ACTCAAGAAAGCCTCTTCTTCTTCTTCTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 261
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 ACTCAAGAAAGCCTCTTCTTCTTCTACTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 237
Query 262 GGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 321
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGCTTTGTTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 297
Query 322 TAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAAGCA 381
|||||||||||||||||||| |||||||||| ||||||||||||| | | ||||||||
Sbjct 298 CAACGAACTCAGGAGCTTCTCTCACGCAGTCAGTGACCAGAAGAAG--GTC-CCAAAGCA 354
Query 382 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGTCAAGGAAA 441
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 355 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGCCAAGGAAA 414
Query 442 GGGTAATAACAACAACACGCAGGAAGTCCCTCAAGAACATGATGCACGTAGAGACAGCAC 501
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 415 GGGTAA---CAACAACACGCAGGAAGTCCCGCAAGAACACGATGCACGTAGAGACAGCAC 471
Query 502 AAGCGCATTCATTCCTTGATTTTCAA 527
||||||||||||||||||||||||||
Sbjct 472 AAGCGCATTCATTCCTTGATTTTCAA 497
Score = 189 bits (102), Expect = 3e-47
Identities = 141/158 (89%), Gaps = 10/158 (6%)
Strand=Plus/Plus
Query 700 TTTGCATATGATTTTTGTAATGGAGTTAA-ATATAATATTAGAATCATCATCAAAATAAA 758
||||||| || | |||||||||||||||| |||||||||||| | |||||| || |||
Sbjct 600 TTTGCAT-TG-TGTTTGTAATGGAGTTAACATATAATATTAG-A--ATCATC--AAGAAA 652
Query 759 CGATTGTAATATCAAGAATCCAAATAATATAGGAAACAGA-AA-GATAAGAAGATAGACA 816
|||||||||||||||||||||||||||||| | ||||||| || || |||||||||||||
Sbjct 653 CGATTGTAATATCAAGAATCCAAATAATATCGAAAACAGAGAAAGAGAAGAAGATAGACA 712
Query 817 TTGAAAATTTATACATCTATCCTACAAGCACGGACCAA 854
|||||| ||||||||||||||||| |||||||||||||
Sbjct 713 TTGAAATTTTATACATCTATCCTAAAAGCACGGACCAA 750
> Ahg912760 jgi|Araly1|912760|Al_scaffold_0001_3014
Length=489
Score = 230 bits (124), Expect = 2e-59
Identities = 224/270 (83%), Gaps = 16/270 (6%)
Strand=Plus/Plus
Query 146 AAA-CTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAAAC- 203
||| |||||||| |||||||||| |||||||||| |||| ||| |||||||||| ||||
Sbjct 138 AAATCTCCTGATAAGAATCACCAGGAGCTGTCCCAGACGACATTACCGGCATTTGAAACT 197
Query 204 TCAAGAAAGCCTCTTCTTCTTCTTC-T-A-C-TGCTTCAGGGAA-CAAGGTCACCAAAGT 258
|| ||||||| |||||||| ||||| | | | | | || ||||| ||||| |||||||||
Sbjct 198 TC-AGAAAGCGTCTTCTTCCTCTTCATCATCAT-CATCTGGGAAGCAAGG-CACCAAAGT 254
Query 259 GGTGGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCG 318
| |||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 255 GTTGGCTTCGTTCTTCCTCTCCTTCCAAAAGAAGAAGCAAAAGAAGGAGAAGATGAAGCG 314
Query 319 GCTTAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAA 378
|||||||||||||||||| |||||| | || |||| ||| | | | |||||| ||||
Sbjct 315 GCTTAACGAACTCAGGAGTTTCTCGGATGCCGTCAGTGA--A-A-G--GAAGGCGTCAAA 368
Query 379 GCAAGAATCAAGCAAGAAAGTTTTCCCATC 408
| |||||||| ||||| || ||||||||
Sbjct 369 TCCTGAATCAAGAAAGAAGGTATTCCCATC 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5