BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34340.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482377 jgi|Araly1|482377|fgenesh2_kg.4__1437__AT2G34340.1 817 0.0
> Ahg482377 jgi|Araly1|482377|fgenesh2_kg.4__1437__AT2G34340.1
Length=744
Score = 817 bits (442), Expect = 0.0
Identities = 583/647 (90%), Gaps = 25/647 (4%)
Strand=Plus/Plus
Query 25 cttcttcttctctcttcCCTATATATAAAACCCTTCATGTTGTTTAGATCAGGTTAAGAT 84
|||| |||||||||||||| ||||||||||||||||| |||||||| || |||||||
Sbjct 16 CTTCGTCTTCTCTCTTCCC--TATATAAAACCCTTCATTTTGTTTAG---AGATTAAGAT 70
Query 85 CATTTTGAGTCTCTCCAAACCCTAATATCAA-ATTCTC-ATCTCATAACTAACAAAAGCA 142
||||| ||||||||||||||||||||||||| ||| || ||| ||| ||||| |||| |
Sbjct 71 CATTTGGAGTCTCTCCAAACCCTAATATCAATATTTTCAATC-CAT-ACTAATAAAA-CC 127
Query 143 TCCCAAAAT-TTCT-AGTAAATGGCGGAGGAATTCGATGAATCTGAGGTAGTGTTCTCCG 200
| || |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 128 TTCC-AAATCTTCTCTGTAAATGGCGGAGGAATTCGATGAATCTGAGATAGTGTTCTCCG 186
Query 201 ATGGTTTAAGCTCCGTTCTCCATAAAGAGAACGAGAATCGCCTGTTTGGTTCTGATATGG 260
| ||||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||||
Sbjct 187 ACGGTTTTAGCTCCGTTCACCATAAAGAGAACAAGAAGCGCCTGTTTGGTTCCGATATGG 246
Query 261 AGAGGAAGAAGACGAGGCGGATCAAGAGGACGACGACGGAGAAGGCGTCGTTGTCGAGCT 320
||| |||||||| |||||||||||||| ||||||||||||||| | | |||||||||| |
Sbjct 247 AGATGAAGAAGAAGAGGCGGATCAAGATGACGACGACGGAGAA-G-G-CGTTGTCGAGTT 303
Query 321 CGCTTCCGGTGAGTATCCCTGAGAACATCTTTCGGAGGTACGTTGGGAAAGAGGAGGATG 380
|||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 304 CGCTTCCGGTGAATATTCCAGAGAACATGTTTCGAAGGTACGTTGGAAAAGAGGAGGATG 363
Query 381 AATACT-CAGAGGAGGAATATTCCGAAGGAGGAGGAGAGATGATTCCGCCGCATATTATG 439
| |||| || ||||||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 364 ATTACTCCA-AGGAGGAATATTCCG-A--CGTAGGAGAGATGGTTCCGCCGCATATTATG 419
Query 440 ATCGGACGGAGGATCCAAGGAGGACAAATGGCGTTTTCCGTTTGTTCAGGTAGTGGAAGG 499
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 420 GTCGGACGGAGGATTCAAGGAGGACAAATGGCTTTTTCCGTTTGTTCAGGTAGCGGAAGG 479
Query 500 ACTCTTAAGGGAAGAGATCTGAGCCGGGTTCGGAATTCGGTTCTTAGGTTAACCGGTTTT 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTCTTAAGGGAAGAGATCTGAGCCGGGTTCGGAATTCGGTTCTTAGGTTAACCGGTTTT 539
Query 560 TTGGAGGCTTGAACCGTTACCGGTTTGCCATACTT-CATCATCTTTTCCCAACTCTTTTG 618
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 540 TTGGAGGCTTGAACCGTTACCGGTTTGCCATATTTTC-TCATCTTTTCCCAACTCTTTTT 598
Query 619 tttttttGCATATTACGGAAAATTGCTAGTGGATCCCCGTGTTGTTT 665
||||||||||||||| |||||||||| |||| |||| |||||||||
Sbjct 599 TTTTTTTGCATATTAAGGAAAATTGCAAGTGT-TCCC-GTGTTGTTT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5