BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34370.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901265 jgi|Araly1|901265|Al_scaffold_0004_1915 1869 0.0
> Ahg901265 jgi|Araly1|901265|Al_scaffold_0004_1915
Length=1422
Score = 1869 bits (1012), Expect = 0.0
Identities = 1291/1425 (91%), Gaps = 22/1425 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAGACTAGT--T-TGCAGCCGAATTCTCAAATTTCCAAAACCGTACTTATGGAGT 57
||||||||| || | | |||||| |||||||||||||| ||||||| ||||| ||| ||
Sbjct 1 ATGGTGAGAATAATAATGTGCAGCAGAATTCTCAAATTTTCAAAACCCTACTTTTGGTGT 60
Query 58 GCGACGCAGACTACAAGCCGTTGCTTCAATTCACGAGCCCAGTCTCATAATCTCATCACA 117
|||||||||| | ||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 61 GCGACGCAGAGTTCAAGCCGTTGCTTTAATTCACGAGCCCAATCTCATGATCTCATCACA 120
Query 118 AAGACGATCACTTCGTCTCTTCAAGACGTTTTAACACGTCCCATTTGGCAAAATCGAAGC 177
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 121 AAGACGATCAATTCGTCTCTTCAAGACGTTTTAACACGACCCACTTGGCAAAATCGAAGC 180
Query 178 TTTGTTCAATGCAGAAGAGTCTCTTCCTATGCTCAGATGG-TTAATAATCATCAATCTGT 236
|||||||||||||||||||| || ||| |||||||||||| || || |||||||||||||
Sbjct 181 TTTGTTCAATGCAGAAGAGTTTCCTCCCATGCTCAGATGGCTT-ATGATCATCAATCTGT 239
Query 237 GACGATTGAGACATTTGATGCTTTGTGTAAACAAGTGAAGATAAGAGAAGCCTTGGAAGT 296
||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 240 GACGATTGAGAAATTTGATGCTTTGTGTGAAGAAGTGAAGATAAGAGAAGCCTTGGAAGT 299
Query 297 TATTGATATCTTGGAGGATAAGGGATATATAGTGGATTTTCCCAGGCTTTTAGGGTTAGC 356
| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 300 TGTTGATATCTTGGAGGATAATGGATATGTAGTGGATTTTCCCAGGATTTTAGGGTTAGC 359
Query 357 GAAACTATGTGGTGAAGTAGAGGCTTTGGAAGAAGCTAGGGTTGTTCATGACTGCATCAC 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GAAACTATGTGGTGAAGTAGAGGCTTTGGAAGAAGCTAGGGTTGTTCATGACTGTATCAC 419
Query 417 TCCTTTAGATGCTAGATCTTACCACACGGTAATCGAAATGTATTCTGGTTGTCGATCCAC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 TCCTTTAGATGCTAGATCTTACCACACGGTAATCGAAATGTATTCTGGTTGTGGATCCAC 479
Query 477 TGATGACGCTTTGAATGTGTTCAACGAAATGCCTAAGAGAAACTCAGAGACTTGGGGTAC 536
| ||||||||||||| |||||| ||||||||||| |||| || |||||||||||| | |
Sbjct 480 TTATGACGCTTTGAAGGTGTTCGACGAAATGCCTGAGAGGAATTCAGAGACTTGGTGCAT 539
Query 537 AATGAT-AAGGTGCTTAGCGAAGAATGGAGAAGGTGAACGCGCAATTGATATGTTCACGC 595
||||| ||| |||||||||||||| |||||||| ||||||||| |||||||||| |||
Sbjct 540 TATGATGAAG-TGCTTAGCGAAGAACGGAGAAGGCGAACGCGCAGTTGATATGTTTACGA 598
Query 596 GTTTCATAGAGGAAGGGAATAAACCCGACAAGGAGATATTCAAAGCTGTTTTCTTTGCGT 655
|||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 599 GTTTCAAAGAGGAAGGGAACAAACCCGACAAGGAGATATTCAAAGCGGTTCTCTTTGCGT 658
Query 656 GTGTTTCGATAGGAGACATTAACGAGGGATTGTTGCATTTTGAGTCTATGTACAGAGATT 715
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 GTGTTTCTCTAGGAGACATTAACGAGGGATTATTGCATTTTGAGTCTATGTACAGAGATT 718
Query 716 ATGGTATGGTTCTTTCAATGGAAGACTATGTGAATGTAATTGAGATGTTGGCAGCTTGTG 775
||||||| ||| || |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 719 ATGGTATCATTCCTTGTATGGAAGACTATGTGAATGTAACCGAGATGTTAGCAGCTTGTG 778
Query 776 GTCATTTGGATGAGGCGTTGGATTTTGTTGAGAGAATGACTGTGGAACCGAGTGTTGAAA 835
|||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 779 GTCATTTGGATGAGGCATTGGAGTTTGTTGAAAGAATAACGGTGGAACCGAGTGTTGAAA 838
Query 836 TGTGGGAAACACTGATGAATCTTTGTTGGGTTCA-GGGATATTTAGAGCTTGGGGATAGG 894
|||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 839 TGTGGGAAACACTGATGAATCTTTGTTGGGTTCATGGGG-ATTTAGAGCTAGGGGATAGG 897
Query 895 TTTGCTGAGTTAATAAAGAAGCTAGATGCCTCAAGAATGAGCAAAGAGTCAAATGCAGGT 954
||||| |||||| | ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 898 TTTGCCGAGTTAGTGAAGAAACTAGATGCCTCAAGAATGAACAAAGAGTCAAATGCAGGT 957
Query 955 CTTGTAGCAGCAAAAGCATCAGACTCTGCAATGGAGAAACTAAAGGAGTTGCGATATTGT 1014
|||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 958 CTTGTAGCAGCAAAAGTATCTGACTCTGCAAAGGAGAAACTAAAGGAAATGCGATATTGT 1017
Query 1015 CAGATGATCAGAGACGACCCAAAAAAGCGTATGCATGA-A-TTTAGAGCAGGAGATACTT 1072
|||||||| ||||||||||||||| |||||| | || | |||||||||||||||||||
Sbjct 1018 CAGATGATGAGAGACGACCCAAAATTGCGTAT-C-TGTCAGTTTAGAGCAGGAGATACTT 1075
Query 1073 CACATCTG--G---G--GA--CCGTTTCTGCATTCAGGAGTTTGAAAGTGCAAATGTTAG 1123
|||||| | | | || ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1076 CACATCGGAAGAATGACGAAACCGTTGCTGCATTGAGGAGTTTGAAAGTGCAAATGTTAG 1135
Query 1124 ATATAGGTTTTGTCCCTGCGACTCGGGTTTGTTTTGTAACAGTGGAAGAAGAGGAAAAAG 1183
|||| |||||| |||||||||||||||||||||| | || ||| ||||||||||||||||
Sbjct 1136 ATATGGGTTTTTTCCCTGCGACTCGGGTTTGTTTGGAAAAAGTCGAAGAAGAGGAAAAAG 1195
Query 1184 AGGAACAACTTCTTTTTAGAAGCAACAAGCTTGCCTTTGCTCACGCGATCATTAATTCAG 1243
||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct 1196 AGGAACAACTTCTTTTTAGAAGCAACAAGCTTGCCTTTGCTTACGCGCTCCTTCATTCAA 1255
Query 1244 AGGCTCGGAGACCATTAACTGTTTTACAAAATATGCGAACCTGTATTGATGGCCACAACA 1303
||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||| |
Sbjct 1256 AGGCTCGGAAACCATTTACTGTTACACAAGATATGCGAACCTGCATTGATGGCCACAATA 1315
Query 1304 CATTTAAGATGATCTCACTGATCACCGGCAGAGCACTGATACAGCGAGATaaaaaaaaaT 1363
||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| ||
Sbjct 1316 CATTTAAGATGATCTCACTGATCACTGGCAGAGAACTGACACAGCGAGATCAAAAAAGAT 1375
Query 1364 ACCACTTTTACAAAAACGGGGTCTGCTCCTGCAAAGATTACTGGT 1408
||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 1376 TTCACCATTACAGAAACGGGGTCTGCTCCTGCCGAGATTACTGGT 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5