BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34380.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482394 jgi|Araly1|482394|fgenesh2_kg.4__1454__AT2G34380.1 2032 0.0
Ahg922016 jgi|Araly1|922016|scaffold_103297.1 523 2e-147
Ahg938272 jgi|Araly1|938272|scaffold_502463.1 370 2e-101
> Ahg482394 jgi|Araly1|482394|fgenesh2_kg.4__1454__AT2G34380.1
Length=1691
Score = 2032 bits (1100), Expect = 0.0
Identities = 1314/1416 (93%), Gaps = 19/1416 (1%)
Strand=Plus/Plus
Query 380 GACTCGATTTCG-GAAAAA-GGAGAAGACTTTGAAGTAATTGACTCGTGTACCGATACGG 437
|||| ||| ||| ||||| || |||||||||||||| ||||||||||||| ||||||||
Sbjct 289 GACT-GATGTCGATAAAAAGGGGGAAGACTTTGAAGTTATTGACTCGTGTATCGATACGG 347
Query 438 AGAAGAATATGGGTGAGAATGATTCGGGTCGGGTCGACCCGTTTACAGTGACCACCTTGA 497
|||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 348 AGAAGAATATGGATGTGAATGATTCGGGTCGGGTTGACCCGTTTACAGCAACCACCTTGA 407
Query 498 ATGATGAGCGAGGTGAGATTTATACCGGACCGGAATATACTTCGACGGATTGGTCTTTGA 557
||||||||||||||||| |||||||||||| ||||| | |||||| ||||||||||||||
Sbjct 408 ATGATGAGCGAGGTGAGGTTTATACCGGACTGGAATCTCCTTCGAGGGATTGGTCTTTGA 467
Query 558 CGAGTCTAGTGATCAGGTCAATTGAATTTCAAGTTAGTTTGATGATTACCTTTATAAGGT 617
| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 468 CCAGGCTAGTGATCAGGTCAATTGAATTTCAAGTTAGTTTGATGATTAGCTTTATAAGGT 527
Query 618 TTCCTCCATGGTTAATTAGTAAATGTTTGAGCTTTGTTTTTGATCCGTATCGAACAATGA 677
||||||||||||||||||| || || |||||||||||||||||||| |||||||||||||
Sbjct 528 TTCCTCCATGGTTAATTAGCAACTGCTTGAGCTTTGTTTTTGATCCATATCGAACAATGA 587
Query 678 GGCGTGGTAGACGCTATTTAGTATCGTGGATTGTTGGGTTATGTGATTCAGGGTTAAAAG 737
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 588 GGCGTGGTAGACGCTATTTAGTATCGTGGATTGTAGATTTATGTGATTCAGGGTTAAAAT 647
Query 738 ATGATAAGCCTGTGTTGGAGCTTGTGCGTAGAG-TAACATGGGGTTTGTTTTGTGCTGTT 796
|||||||||||||||||||| ||||||| || | || |||||||||||||||||||||||
Sbjct 648 ATGATAAGCCTGTGTTGGAGGTTGTGCGGAG-GTTAGCATGGGGTTTGTTTTGTGCTGTT 706
Query 797 TATGTGGGGATCATGTTGTTTGCCTTGTTGGTTTCTGCGTTTATGATTAGTGGTTTTGTG 856
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 707 TATGTGGGGATCATGTTGTTTACCTTGTTGGTTTCTGCGTTTATGATTAGTGGTTTTGTG 766
Query 857 ATTACCT-ATTTGGCTCATGAACCACTTGTTATCAAAGAGAGCTTGAATTTTGATTACAC 915
|||| || |||||||||||||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct 767 ATTA-CTCATTTGGCTCATGAACCACTTGTAATCAAGGAGAGTTTGAATTTTGATTATAC 825
Query 916 CAAGAGTAGTCCTGAAGCTTATGTGCCCATAAGTTCATGTGCTGGTGTTGCCTTTGGTTT 975
|||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 826 CAAGAGTAGTCCAGAAGCTTATGTCCCCATAAGTTCATGTGCTGGTATTGCCTTTGATTT 885
Query 976 GAGTGGCAAGGAGAGTATTGAAACTGGGAAGGTCAAAGGGTTGAAAGACAGGACAGAGAT 1035
|||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||
Sbjct 886 GAGTGGCAAGGAGAGTATTGAAACCGGGAAGATCAGAGGGTTGAAGGACAGGACAGAGAT 945
Query 1036 AACTGTGTCAATGACATTGCCTGAGTCCGAGTACAATAGAAAT-CTCGGGATGTTTCAGG 1094
||||| || ||||||||||||||||| ||||||||||| ||| || |||||||||||||
Sbjct 946 CACTGTCTCCATGACATTGCCTGAGTCTGAGTACAATAG-AATCCTTGGGATGTTTCAGG 1004
Query 1095 TTCGGGTGGACTTCTTATCCGCGAGTGGTC-ATGTGCTTGCTAGTTCAAGGCGGCCGTGT 1153
|||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||||
Sbjct 1005 TTCGGGTGGACTTCTTATCCCCAAGTGGTCAAT-TGCTTGCTAGTTCAAGGAGGCCGTGT 1063
Query 1154 ATGGTAAAATTTAGTAGCGAGCCTATACGTCTTGTCCAGACTTTGCTAAAGATTGCTCCG 1213
||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1064 ATGGTAAGATTTAGAAGCGAGCCTATCCGTCTTGTCCAGACTTTGCTAAAGATTGCTCCG 1123
Query 1214 CTTGTCACGGGCTATGTCTCTGAAATCCAAACCTTGAACTTGAAGCTTAAAGGCTTGGTC 1273
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 CTTGTCACAGGCTATGTCTCTGAAATTCAAACCTTGAACTTGAAGCTTAAAGGCTTGGTC 1183
Query 1274 GAAAAGGACATTATTCCTACTGCTTGCTTGAAGATCATGATCGAACAACGTGCAGAGTTT 1333
||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 1184 GAAAAGGACATTATTCCTACTGCTTGCTTGAAGGTAATGATTGAACAACGGGCAGAGTTT 1243
Query 1334 CGTCCTGGAGCAGGTATTCCTGAGATTTACGATGCATCTCTGTTCCTTGAATCCAAACTT 1393
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1244 CGTCCTGGAGCAGGTATTCCAGAGATTTACGATGCATCTCTGTTGCTTGAATCCAAACTT 1303
Query 1394 CCTTTCTTGAAAAGGATCATATGGAACTGGAGGAAAACTTTGTTTGTCTGGATCAGCATG 1453
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1304 CCTTTCTTCAAAAGGATCATATGGAACTGGAGGAAAACTTTTTTTGTCTGGATCAGCATG 1363
Query 1454 AGTTTGTTCATTATGGAATTACTTTTCGCCTTAGTTTTCTTCAGACCTCTGATCATCCCA 1513
||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1364 AGTTTGTTCGTTATGGAATTGCTTTTCGTCTTAGTTTTCTTCAGACCTCTGATCATCCCA 1423
Query 1514 AGAACAGGTCAGAGAACACAACAAAGAGATGGAACACATTCTATCAACAACAACTTATAT 1573
|||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||
Sbjct 1424 AGAACAGGTCAGAGAACACAACAAAGAGATAGAACACATTC--TC-TCAACAACTTAAAT 1480
Query 1574 CTTGACGGTCAGGCGGGAAGTAGATGAATCAGTGGTTGACTAGTTGTTGTAACGGTACTT 1633
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTTGACAGTCAGGCGGGAAGTAGATGAATCAGTGGTTGACTAGTTGTTGTAACGGTACTT 1540
Query 1634 ACACTTACTGTAACTTTAATATCTTTCTTCAACCGAAATTGTAATATCCTGTCTGCTAAT 1693
|||||||||||||||||| | |||| |||||||| ||||||||||||| || ||||||||
Sbjct 1541 ACACTTACTGTAACTTTAGTTTCTT-CTTCAACCAAAATTGTAATATCTTGCCTGCTAAT 1599
Query 1694 TAAAGTCGCATTGTCCAAATAGACTTATAAGTTACGTTCTTGAATCGTTTTCATAAGTCG 1753
| |||||||||||||| |||| |||| |||||| | ||||||||||||| |||||||
Sbjct 1600 TGAAGTCGCATTGTCCGAATAAACTTTTAAGTT---T-CTTGAATCGTTTTTATAAGTCA 1655
Query 1754 GAATGATACAGACTTTTAATTTGATTTACAGTGTAC 1789
|||||||||||||| ||||||||||||||||||||
Sbjct 1656 CAATGATACAGACTTCTAATTTGATTTACAGTGTAC 1691
Score = 287 bits (155), Expect = 2e-76
Identities = 234/270 (87%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 91 ATCATC-AACACATAGCAGCTGCGATCGATTCCTAGACGCAGAAGACGAATTCTTTTACG 149
|||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 37 ATCATCAAAC-CCTATTAGCTGCGATCGATTCCTAGACGCACCAGACGAATTCTTTTACG 95
Query 150 ATAGCTTCTCGAACCACT---A---CGACTGCCTCAATTCGTCTCCCCCCGCGAATCTCC 203
| |||||| ||| ||||| | |||||||||||||||||||||| |||||||| |||
Sbjct 96 ACAGCTTCGCGACCCACTACGATTCCGACTGCCTCAATTCGTCTCCCGCCGCGAATATCC 155
Query 204 GTCGCCGAAGGTTGCCTATGGATACGGATTCTTCTTCTTCCTCTTCTACGTCTTCATTGG 263
||||||||||||| ||||||||||||||| ||||||| ||||||||| | |||||
Sbjct 156 TTCGCCGAAGGTTGGTTATGGATACGGATTCGTCTTCTTGCTCTTCTAC-TA--CATTGA 212
Query 264 AATCTTGTGAGAAACGGAGCACCGTGGGAGAAAATGACGAGCTTGAGGTTTCTCTAGTGG 323
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 213 AATCTTTTGAGAAACGGAGCTCCGTGGGAGAAAATGACGAGCTTGAGGTTTCTATAA-GG 271
Query 324 A-TTTCGAAACAATTGAAATTGATGTCGAT 352
| ||||||||||||||| | ||||||||||
Sbjct 272 AATTTCGAAACAATTGAGACTGATGTCGAT 301
> Ahg922016 jgi|Araly1|922016|scaffold_103297.1
Length=1628
Score = 523 bits (283), Expect = 2e-147
Identities = 617/772 (80%), Gaps = 48/772 (6%)
Strand=Plus/Plus
Query 776 TGGGGTTTGTTTTGTGCTGTTTATGTGGGGATCATGTTGTTTGCCTTGTTGGTTTCTG-C 834
|||||| ||||||| ||||||||||| || || ||||||||| |||||||||||| | |
Sbjct 805 TGGGGTATGTTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTC-GTC 863
Query 835 GTTTATGATTAGTGGTTTTGTGAT-TACCTATTTGGCTCATGAACCACTTGTTATCAAAG 893
|||||||| |||||| |||||| ||| | | || || ||||| ||| |||| |
Sbjct 864 CCTTATGATTGGTGGTTATGTGATAAACC-GTATAGCGGATAAACCATTTGAGGTCAAGG 922
Query 894 AGAGCTTGAATTTTGATTACACCAAGAGTAGTCCTGAAGCTTATGTGCCCATAAGTTCAT 953
||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||| || |
Sbjct 923 AGACCTTGAATTTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATAACCTCGT 982
Query 954 GTGCTGGTGTTGCCTTTG-GTTTG-AGTGGCAAGGAGAGTATTGAAACTG-GGAAGGTCA 1010
|||||||||||| ||| | | ||| ||||||| |||| ||||| || |||| |||
Sbjct 983 GTGCTGGTGTTG--ATTGTGAGGGAAGTTGCAAGGAAAGTAATGAAA-TGTCGAAGATCA 1039
Query 1011 AAGGGTTGAAAG--A---C-AG-GA-CAG-AG----ATA--ACTGTGTCAATGACATTGC 1055
||| ||| || | | | || ||| || ||| | | | ||||||||||| |
Sbjct 1040 GAGGCTTGCGAGTTATCCCTCGAGACCAGAAGTTAAATATCATTCTTTCAATGACATTAC 1099
Query 1056 CTGAGTCCGAGTACAATAGAAATCTCGGGATGTTTCAGGTTCGGGTGGACTTCTTATCCG 1115
||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1100 CTGAGTCTGCGTACAATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTG 1159
Query 1116 CG-AGTGGTCATGTGCTTGCTAGT-TCAAGGCGGCCGTGTATGGTAAAATTTAGTAGCGA 1173
| | |||||| | |||||||| | |||||| ||||| ||| ||| ||| || |||||
Sbjct 1160 TGGA-TGGTCAAACGATTGCTAGTAT-AAGGCGTCCGTGCATGCTAAGATTCAGAAGCGA 1217
Query 1174 GCCTATACGTCTTGTCCAGAC-TT-TGCTAAAGATTGCTCCGCTT-GTCACGGGCTATGT 1230
|||||| |||||||| ||||| || | | ||| || | |||| || || || || |||||
Sbjct 1218 GCCTATCCGTCTTGTTCAGACATTCTTC-AAA-ATGGTTCCG-TTAGTGACAGGATATGT 1274
Query 1231 CTCTGAAATCCAAACCTTGAACTTGAAGCTT-AAAGGCTTGGTCGAAAAGGACATTATTC 1289
|||||| |||||||| |||| ||||||| || |||||||| || |||||||| | ||||
Sbjct 1275 CTCTGAGATCCAAACTTTGAGCTTGAAG-TTGAAAGGCTTTGTAGAAAAGGA-A--ATTC 1330
Query 1290 CTACTGCTTGCTTGAAGATCATGATCGAACAACGTGCAGAGTTTCGTCCTGGAGCAGGTA 1349
| ||||||||||| ||||| || || |||||||| ||||| ||||| || ||||||||||
Sbjct 1331 CCACTGCTTGCTTAAAGATAATTATTGAACAACGGGCAGAATTTCGACCCGGAGCAGGTA 1390
Query 1350 TTCCTGAGATTTACGATGCATCTCTGTTCC-TTGAATCCAAACTTCCTTTCTT--GAAAA 1406
|||| ||| | ||||||||||| |||| | |||||||| ||||| ||||| |||||
Sbjct 1391 TTCCAGAGCTGTACGATGCATCCCTGT-CGGTTGAATCCGGTCTTCCCTTCTTCAGAAAA 1449
Query 1407 GGATCATATGGAACTGGAGGAAAACTTTGTTTGTCTGGATCAGCATGAGTTTGTTCATTA 1466
| | |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1450 GT-T-ATATGGAAATGGCGGAAAACTTTGTTCGTCTGGATCAGCATGAGTTTGTTCATTA 1507
Query 1467 TGGAATTACTTTTCGCCTTAGTTTTCTT-CAGACCTCTGATCATCCCAAGAA 1517
|||||| |||||| | || |||| || ||| ||||| |||||||||||||
Sbjct 1508 CGGAATTGCTTTTCACGTTGGTTTG-TTGCAGTCCTCTTATCATCCCAAGAA 1558
> Ahg938272 jgi|Araly1|938272|scaffold_502463.1
Length=553
Score = 370 bits (200), Expect = 2e-101
Identities = 307/355 (86%), Gaps = 22/355 (6%)
Strand=Plus/Plus
Query 163 CCACTACGACTGCCTCAATTCGTCTCCCCCCGCGAATCTCCGTCGCCGAAGGTT-GCCTA 221
||| |||||| |||||||||||||||| || ||||||||||| |||||||||| | |||
Sbjct 80 CCATTACGACAGCCTCAATTCGTCTCCAACCACGAATCTCCGTAGCCGAAGGTTAG-CTA 138
Query 222 TGGATACGGATTCTTCTTCTTCCTCTTCTACGTCTTCATTGGAATCTTGTGAGAAACGGA 281
| ||||||||||| |||||||||||||||| || |||||||||||| ||||||| |||
Sbjct 139 TCGATACGGATTCGTCTTCTTCCTCTTCTA---CTACATTGGAATCTTTTGAGAAATGGA 195
Query 282 GCACCGTGGGAGAAAATGACGAGCTTGAGGTTTCTCTAGTGGA-TTTCGAAACAATTGA- 339
|| |||||||||||||||||||||||||||||| | || ||| |||||||| ||||||
Sbjct 196 GCTCCGTGGGAGAAAATGACGAGCTTGAGGTTTTTATAA-GGAATTTCGAAATAATTGAG 254
Query 340 AATTGATGTCGATGTTACTGACTCTGCAAATAGCTCAATCGACTCGATTTC-GGAAAAAG 398
||| |||||||||||||||||||||||| |||||||||||| | | ||| | ||||||||
Sbjct 255 AAT-GATGTCGATGTTACTGACTCTGCAGATAGCTCAATCGTCCCAATT-CAGGAAAAAG 312
Query 399 GAGAAGACTTTGAAGTAATTGACTCGTGTACCGATACGGAGAAGAATATGGGTGAGAATG 458
| |||||||||||||| || ||||| | ||| | | |||||||||||| || |||||
Sbjct 313 GGGAAGACTTTGAAGTTAT-GACTC-T-TAC-G----G-AGAAGAATATGGATGTGAATG 363
Query 459 ATTCGGGTCGGG-TCGACCCGTTTACAGTGACCACCTTGAATGATGAGCGAGGTG 512
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 364 ATTCGGGTCGGGCT-GACCCGTTTACAGCAACCACCTTGAATGATGAGCGAGGTG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5