BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34390.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901267 jgi|Araly1|901267|Al_scaffold_0004_1917 551 4e-156
> Ahg901267 jgi|Araly1|901267|Al_scaffold_0004_1917
Length=777
Score = 551 bits (298), Expect = 4e-156
Identities = 406/455 (89%), Gaps = 19/455 (4%)
Strand=Plus/Plus
Query 123 ATGGATGACATATCAGTGAGCAAAAGCAACCACGGAAATGTTGTTGTGCTCAACATCAAA 182
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1 ATGGATGACATATCCGTGAGCAAAAGCAACCATGGAAATGTTGTTGTACTCAACATCGAA 60
Query 183 GCGTCTTCTCTTGCAGACACTTCTCTTCCTTCCAACAAACACGAGTCATCGTCCCCGCCT 242
|| || ||| ||||||||| | |||| |||||||||| ||| ||||
Sbjct 61 GCTTCCTCTGTTGCAGACA-------------C--CAAATACGAGTCATCATCCTCGCCA 105
Query 243 TTGCTCTCTGTCCATTTCTTGCAAAAGCTCT-TAGCGGAGCTCGTTGGAACTTACTATC- 300
||| ||||||||||||||||||||||||| | | ||||| ||||| |||||||| || |
Sbjct 106 TTGATCTCTGTCCATTTCTTGCAAAAGCT-TATGGCGGAACTCGTGGGAACTTATTA-CT 163
Query 301 TGATATTTGCTGGCTGTGCCGCCATTGCCGTGAATGCTCAACACAACCATGTAGTGACTC 360
||||||| || || ||||| || |||||||||||||||||| |||||||||| |||||||
Sbjct 164 TGATATTCGCGGGTTGTGCTGCTATTGCCGTGAATGCTCAATACAACCATGTCGTGACTC 223
Query 361 TTGTGGGGATTGCTGTGGTTTGGGGTATAGTGATAATGGTTCTTGTTTACTGTCTCGGCC 420
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TTGTGGGCATTGCAGTGGTTTGGGGTATAGTGATAATGGTTCTTGTTTACTGTCTCGGCC 283
Query 421 ACCTCTCTGCACATTTCAATCCTGCTGTCACTCTTGCCTTAGCATCTTCCCAAAGATTCC 480
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 284 ACATCTCTGCACATTTCAATCCTGCTGTCACTCTTGCCTTAGCATCCTCCCAAAGATTCC 343
Query 481 CTCTGAATCAAGTCCCGGCCTACATAACTGTTCAAGTCATCGGATCAACCTTGGCATCTG 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 344 CTCTGAATCAAGTCCCGGCTTACATAACTGTTCAAGTCATCGGATCAACCTTGGCCTCTG 403
Query 541 CGACTCTGCGTCTTCTGTTTGATCTGAACAATGAT 575
||||||| |||||||||||||||||||||||||||
Sbjct 404 CGACTCTCCGTCTTCTGTTTGATCTGAACAATGAT 438
Score = 532 bits (288), Expect = 2e-150
Identities = 322/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 651 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACCACCAAGAGAACT 710
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 439 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACTACCAAGAAAACT 498
Query 711 ACAGAGGAACTAGAGGGGCTAATCATTGGGGCAACCGTCACACTGAATGTTATATTTGCT 770
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct 499 ACTGAGGAACTAGAGGGGTTAATCATTGGGGCAACCATCACACTGAATGTTATCTTTGCC 558
Query 771 GGAGAGGTATCAGGAGCATCGATGAATCCAGCCAGAAGCATAGGACCTGCACTTGTGTGG 830
||||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 559 GGAGAGGTATCAGGAGCCTCAATGAATCCAGCAAGAAGCATAGGGCCTGCACTGGTGTGG 618
Query 831 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCCGTCTCTGGG 890
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 619 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCTGTCTCTGGG 678
Query 891 GCCTTGATTCATAAAATGTTACCGTCAATACAGAACGCAGAGCCTGAGTTCTCCAAGACA 950
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 679 GCCTTGATTCATAAAATGTTACCGGCTATACAGAACGCAGAGTCTGAGTTCTCCAAGACA 738
Query 951 GGATCTTCTCATAAACGAGTTACCGATCTTCCTCTGTGA 989
||||||||||||||||||||||||||||||||| |||||
Sbjct 739 GGATCTTCTCATAAACGAGTTACCGATCTTCCTTTGTGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5