BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34400.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482397 jgi|Araly1|482397|fgenesh2_kg.4__1457__AT2G34400.1 2843 0.0
> Ahg482397 jgi|Araly1|482397|fgenesh2_kg.4__1457__AT2G34400.1
Length=1854
Score = 2843 bits (1539), Expect = 0.0
Identities = 1739/1837 (95%), Gaps = 8/1837 (0%)
Strand=Plus/Plus
Query 20 TCAAACCAGAGAAACTAGCGTTCTCGATTTACCGCCAA-T----TTC-CTAAATTCAAAC 73
||||||||||||||||||| ||||| |||||||||||| | ||| || |||||||||
Sbjct 5 TCAAACCAGAGAAACTAGCTTTCTCCATTTACCGCCAATTCCAATTCTCTCAATTCAAAC 64
Query 74 CTAGACAATTTGAAGAAGCACGACGCGGCGATCTCGAGAGGGACTTTCTTTTCCTGTTGA 133
|||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 65 CTAGACAACTCGAAGAAGCACGACGCGGCGATCTTGAGAGAGACTTTCTTTTCCTGTTGA 124
Query 134 AAAAATGTATCTCCGTGAACCAATTGCGACAGATTCAAGCCCAGATGTTGTTACACTCCG 193
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 125 AAAAATGCATCTCCGTGAACCAATTGCGAGAGATTCAAGCCCAGATGTTGTTACACTCCG 184
Query 194 TCGAAAAACCGAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACTCCT 253
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 185 TCGAGAAACCCAATTTTCTGATTCCCAAGGCCGTCGAACTTGGAGACTTCAATTACGCTT 244
Query 254 CTTTTCTCTTCTCCGTCACGGAAGAACCAAACCATTACTCTTTCAATTACATGATCCGAG 313
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 245 CTTTTCTCTTGTCCGTCACGGAACAACCAAACCACTACTCTTTCAATTACATGACCCGAG 304
Query 314 GGTTGACCAACACATGGAATGATCACGAAGCTGCTCTGTCTCTGTATCGACGGATGAAGT 373
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 305 GGTTGACCAATATATGGAATGATCACGAAGGTGCTCTGTCTCTGTATCGACGGATGAAGT 364
Query 374 TTTCTGGGTTAAAGCCTGATAAGTTCACTTATAATTTTGTTTTCATCGCTTGTGCGAAGC 433
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 365 TTTCTGGGTTAAAGCCTGATAATTTCACTTATAATTTTGTTTTCATTGCTTGTGGGAAGC 424
Query 434 TTGAGGAGATAGGAGTTGGTAGATCTGTCCACTCGTCGTTGTTCAAAGTTGGATTGGAAA 493
|||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 425 GTGAGGAGATAGGGGTTGGTAGATCTGTTCATTCGTCGTTGTTCAAAGTCGGATTGGAAA 484
Query 494 GAGACGTTCATATAAATCATTCTCTGATTATGATGTATGCGAAATGTGGTCAGGTGGGTT 553
|||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 485 GAGACGATCATATAAGTCATTCTTTGATTATGATGTATGCGAAATGTGGTCTGGTGGGTT 544
Query 554 ATGCCCGGAAGTTGTTCGATGAAATTACTGAGAGAGATACGGTGTCTTGGAACTCGATGA 613
||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 545 ATGCCCGGAAGGTGTTCGATGAAATTACTGACAGAGTTACGGTGTCTTGGAACTCGATGA 604
Query 614 TCTCTGGGTATTCTGAGGCGGGTTACGCTAAAGATGCTATGGATTTGTTTAGGAAGATGG 673
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 605 TCTCTGGGTATTCTGAGGCGGGTCACGCAAAAGACGCTATGGATTTGTTTAGGAAGATGG 664
Query 674 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTGCT-CA 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 665 AGGAGGAAGGATTTGAACCAGATGAGAGGACGTTGGTGAGTATGTTGGGTGCTTG-TGCA 723
Query 733 CATTTGGGTGATTTGAGAACTGGTAGATTGCTGGAGGAGATGGCCATCACCAAGAAGATC 792
|||||||| ||||||| ||||||||||||||||||| |||| || ||||| |||||||||
Sbjct 724 CATTTGGGGGATTTGACAACTGGTAGATTGCTGGAGAAGATAGCTATCACGAAGAAGATC 783
Query 793 GGGTTAAGCACGTTTCTGGGGTCTAAGTTGATCAGTATGTATGGAAAATGTGGTGATTTG 852
||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||
Sbjct 784 GGGTTAAGCACCTTTCTCGGGTCTAAGTTGATGAGTATGTATGGAAAATGCGGCGATTTG 843
Query 853 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGACTGCT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 844 GATTCTGCCAGAAGGGTTTTCAATCAAATGATTAAGAAGGATCGTGTTGCTTGGAATGCT 903
Query 913 ATGATCACTGTATACTCACAAAATGGGAAGTCAAGTGAGGCTTTTAAACTGTTTTTTGAG 972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 904 ATGATCACTGTATACTCACAAAATGGGAAGTCGAGTGAGGCTTTTAAACTGTTTTTTGAG 963
Query 973 ATGGAAAAAACCGGAGTTTCACCAGACGCGGGCACATTGTCTACAGTTCTGTCTGCTTGT 1032
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 964 ATGGAAAAAGCCGGAGTTTCCCCAGACGCGGGCACATTGTCTACGGTTCTGTCTGCTTGT 1023
Query 1033 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACAAATTGAGACCCATGCATCAGAACTTTCC 1092
||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||
Sbjct 1024 GGTTCAGTTGGAGCTCTTGAATTAGGCAAACGAATAGAGACCCACGCATCAGAAATTTCC 1083
Query 1093 TTGCAACATAATATCTATGTGGCCACAGGACTAGTCGACATGTATGGAAAGTGCGGACGG 1152
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1084 TTGCAACATAACATCTATGTGGCCACAGGACTAGTCGACATGTACGGAAAGTGCGGACAC 1143
Query 1153 GTAGAGGAAGCTCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCCACTTGGAAC 1212
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1144 ATAGAGGAAGCCCTGAGAGTATTTGAAGCTATGCCAGTGAAAAACGAAGCTACTTGGAAC 1203
Query 1213 GCTATGATAACCGCTTATGCGCATCAAGGACACGCTAAAGAAGCTCTTTTGCTGTTTGAT 1272
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1204 GCTATGATAACCGCTTATGCGCATCAAGGACATGCTAAAGAAGCTCTATTGCTATTTGAT 1263
Query 1273 CGAATGTCAGTTCCTCCAAGTGATATAACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1332
| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1264 CAAATGCCAGTTCCTCCAAGTGATGTTACATTCATAGGAGTGCTCTCTGCTTGTGTGCAC 1323
Query 1333 GCGGGTTTGGTCCATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTATGTTCGGGTTG 1392
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1324 GCGGGTTTGGTCGATCAGGGCTGTCGATATTTCCATGAGATGAGTTCTTTGTTCGGGTTG 1383
Query 1393 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGATGTTA 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1384 GTCCCAAAAATCGAGCATTACACAAACATAATCGATCTCCTGTCTCGTGCGGGGCTGTTA 1443
Query 1453 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GACGAGGCTTGGGAGTTCATGGAGAGGTTTCCTGGGAAGCCTGATGAGATCATGTTAGCA 1503
Query 1513 GCGATCCTTGGAGCATGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1572
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GCGATCCTTGGAGCGTGTCATAAGAGAAAAGATGTTGCGATCAGAGAGAAGGCGATGAGG 1563
Query 1573 ATGTTGATGGAGATGAAAGAGGCGAAGAACGCAGGAAACTATGTAATCTCTTCTAATGTT 1632
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1564 ATGTTGATGGAGATGAAAGAGGCGAAAAACGCAGGAAACTATGTAATCTCTTCGAAGGTT 1623
Query 1633 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGAGAGACAGA 1692
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1624 TTAGCTGATATGAAGATGTGGGATGAGTCTGCGAAGATGAGGGCGTTGATGCGAGACAGA 1683
Query 1693 GGCGTCGTTAAGACACCAGGATGCAGCTGGATTGAGATCGAGGGTGAGCTAATGGAATTT 1752
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1684 GGCGTTGTTAAGACACCAGGATGCAGCTGGATTGAGATCGATGGTGAGCTAATGGAGTTT 1743
Query 1753 CTTGCCGGAAGCGATTATTTACAGTGTGGCAGGGAAGATTCCGGTTCGTTATTTGATTTG 1812
|||||||||||||||||||||| || ||||||||||||||| |||||||| |||| ||||
Sbjct 1744 CTTGCCGGAAGCGATTATTTACGGTATGGCAGGGAAGATTCAGGTTCGTTGTTTGGTTTG 1803
Query 1813 TTGGTGGAGGAGATGAAGAGGGAAAGGTATGAATTTG 1849
|||||||||||||||||||||||| ||||||| ||||
Sbjct 1804 TTGGTGGAGGAGATGAAGAGGGAACGGTATGATTTTG 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5