BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34420.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 1275 0.0
Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 1057 0.0
Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 1026 0.0
Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 1014 0.0
Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2 82.4 6e-15
> Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1
Length=798
Score = 1275 bits (690), Expect = 0.0
Identities = 722/738 (98%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 119 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAG 178
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 4 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAG 63
Query 179 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCC 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 64 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCC 123
Query 239 GGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCT 298
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 GGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACCGCC 183
Query 299 GGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 243
Query 359 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 303
Query 419 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGA 478
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 304 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGGAGGA 363
Query 479 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 423
Query 539 ACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTG 598
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 424 ACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTG 483
Query 599 GGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 658
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 543
Query 659 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATG 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGCTATG 603
Query 719 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 663
Query 779 CTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTC 838
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 664 CTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAACTTC 723
Query 839 GTCCCCGGAAAGTGAGCG 856
||||||||||||| ||||
Sbjct 724 GTCCCCGGAAAGTAAGCG 741
Score = 73.1 bits (39), Expect = 4e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 912 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 950
|||||||||||||||||||||||||||||||||||||||
Sbjct 751 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 789
> Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1
Length=1008
Score = 1057 bits (572), Expect = 0.0
Identities = 755/843 (90%), Gaps = 14/843 (2%)
Strand=Plus/Plus
Query 21 ACCaaaaaaaagaaaacacaaaaacaaaGATTAT-AATGGCTTCCTCAACCATGGCTTTG 79
||||||||||| |||| || | || ||| ||| | |||||| ||||||| |||||| |
Sbjct 22 ACCAAAAAAAA-AAAA-AC-ACAA-AAA-ATTTTCAATGGCCGCCTCAACAATGGCTCTC 76
Query 80 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAGCC--T-----GCCGCATCAGATGTCCT 132
|||||||||||||||||||||||||||||||| || | || |||||||| |||||
Sbjct 77 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAA-CCTTTCCCCCGCGGCATCAGAAGTCCT 135
Query 133 CGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAGGGTCCATCAGGCAG 192
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 136 TGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGTCCATCAGGCAG 195
Query 193 CCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCCGGCGAGCCCCCGAG 252
||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||
Sbjct 196 CCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAG 255
Query 253 CTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCTGGTCTATCCGCCGA 312
|||||||||||| ||||||||||| |||||||||||||||||||| || || || |||||
Sbjct 256 CTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGA 315
Query 313 CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCT 372
||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 316 CCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCT 375
Query 373 CGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGA 432
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 376 CGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGA 435
Query 433 AGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGG 492
|| ||||||||||||||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 436 GGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGG 495
Query 493 CAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCT 552
||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| |
Sbjct 496 AAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTT 555
Query 553 CATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGA 612
|||||||| |||||||||||||||||||| ||| |||| ||||||||||| || |||||
Sbjct 556 GATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGA 615
Query 613 CTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTT 672
|||||||||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||
Sbjct 616 CTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTT 675
Query 673 CGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGG 732
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 676 CGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGG 735
Query 733 ATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGACCATTT 792
|||||||||||||||||| ||||| || |||||||| | |||||||| || ||||||||
Sbjct 736 ATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTT 795
Query 793 GGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTCGTCCCCGGAAAGTG 852
|||||| ||||| | ||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 796 GGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTG 855
Query 853 AGC 855
|||
Sbjct 856 AGC 858
> Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1
Length=987
Score = 1026 bits (555), Expect = 0.0
Identities = 726/808 (90%), Gaps = 13/808 (2%)
Strand=Plus/Plus
Query 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAG- 112
|||||| |||| || |||||| | ||||| |||| || | ||||||||||| || |||
Sbjct 45 AATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAGC 103
Query 113 -----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCG 167
|| || || || || || | |||| |||||| || |||||| | || | | |
Sbjct 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAA-A--GCCT 160
Query 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227
|||| || | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 161 CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 220
Query 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287
||||||||||||| ||||| ||||||||||| || || || ||||||||||||||||| |
Sbjct 221 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGGT 280
Query 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347
||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 281 GGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 340
Query 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGG 400
Query 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467
|| | || ||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 401 CTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCA 460
Query 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 461 GCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 520
Query 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 521 CCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAA 580
Query 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 ATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGG 640
Query 648 GCCTCGCTACTGACCCCGAGGC-TTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 706
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 641 GCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 699
Query 707 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 766
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 700 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 759
Query 767 CCTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTC 826
|| |||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 760 CCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 819
Query 827 GCCACCAACTTCGTCCCCGGAAAGTGAG 854
|| |||||||||||||||||||||||||
Sbjct 820 GCTACCAACTTCGTCCCCGGAAAGTGAG 847
> Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1
Length=1002
Score = 1014 bits (549), Expect = 0.0
Identities = 723/808 (89%), Gaps = 8/808 (1%)
Strand=Plus/Plus
Query 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAG-- 112
|||||| |||||||||||||| | |||||||||||||||||||||||||| || |||
Sbjct 63 AATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAGCT 122
Query 113 ----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTC-G 167
|| || |||||||| ||||| ||||||||||||||||| ||||||||||| | |
Sbjct 123 TTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGAC-AACTG 181
Query 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 CCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 241
Query 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287
| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 242 GCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGAT 301
Query 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347
|||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 302 GGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAG 361
Query 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 TTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGG 421
Query 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467
| ||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 422 CCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTCA 481
Query 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527
|||| ||||| | || |||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 482 GCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTGG 541
Query 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587
| |||||||| |||||||||||| | |||||||| |||||||||||||||||||| |||
Sbjct 542 CGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAA 601
Query 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647
|||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 602 ATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGG 661
Query 648 GCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 707
| | ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 662 GTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 721
Query 708 GGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGAC 767
| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 722 GATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGAC 781
Query 768 CTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCG 827
| | |||||||| || |||||||||||||| ||||| | ||||||||| ||||||||||
Sbjct 782 CGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCG 841
Query 828 CCACCAACTTCGTCCCCGGAAAGTGAGC 855
|||||||||| || ||||||||||||||
Sbjct 842 CCACCAACTTTGTTCCCGGAAAGTGAGC 869
> Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2
Length=2321
Score = 82.4 bits (44), Expect = 6e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 951 AGAAATCGAACCTCTTTTTCTCTAACTGTGTTGGCGTTTTATCT 994
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2321 AGAAATCGAACCTCTTTTTCTCTAACTGTGTTGGCGTTTTATCT 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5