BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34430.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 1537 0.0
Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 1075 0.0
Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 935 0.0
Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 928 0.0
> Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1
Length=987
Score = 1537 bits (832), Expect = 0.0
Identities = 934/984 (95%), Gaps = 3/984 (0%)
Strand=Plus/Plus
Query 22 TTAACTAAAGAGCCTTTTACTTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGG 81
||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 TTAACTAAA-AACCATTTACTTGCACCACACTCTCACCGCAATGGCCGCCTCGACAATGG 64
Query 82 CTCTCTCCTCTCCTGCTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 141
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTCTCTCCTCTCCTGCTATGGCCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAG 124
Query 142 TATTTGGAACCGGCCGAATCACCATGCGCAAAGCCTCCAAGCCCACCGGTCCATCCGGCA 201
||||||||| ||||||| | |||||||||||||||||||| |||||||||||||| ||||
Sbjct 125 TATTTGGAATCGGCCGAGTTACCATGCGCAAAGCCTCCAAACCCACCGGTCCATCAGGCA 184
Query 202 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGA 244
Query 262 GCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCG 321
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 245 GCTACCTCACTGGAGAATTCCCCGGTGACTACGGGTGGGACACTGCCGGTCTATCCGCAG 304
Query 322 ATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 381
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGC 364
Query 382 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAG 441
||||||||||||||||||||||||||||||| |||||| | || ||||| || |||||||
Sbjct 365 TCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGGCTCGCAATGGAGTCAAATTCGGAG 424
Query 442 AAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGG 501
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 425 AGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGGATTGGACTACTTGG 484
Query 502 GCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCC 561
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 485 GCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCCACTCAAGTGATCC 544
Query 562 TCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGG 621
|||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 545 TCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTGGGAGAGGCAGAGG 604
Query 622 ACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGC-T 680
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 605 ACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTACTGACCCCGAGGCGT 664
Query 681 TTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 740
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTT 723
Query 741 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCAC 800
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 724 GGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAATCTTGCTGACCAC 783
Query 801 TTGGCTGATCCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 860
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 TTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAG 843
Query 861 TGAGTTTAATTTGTGATCGAGTTGTGTGTATCCGGTTTGTTGCATCTTGGAAATGTGATG 920
|||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 844 TGAGTTTAATATGTGATCAAGTTGTGTGTATCTGGTTTGTTGAATCTTGGAAATGTGATG 903
Query 921 CAGATTTCATATCTTGTAAATTACTTTGTATGTGTGTGAAATATTTAAGAAGCTTTATGA 980
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 904 CAGATTTCATCTCTTGTATATTACTTTGTAAGTGTGTGAAATATTTAAGAAGCTTTATGA 963
Query 981 TATTGATGGATCAGTCACTTACTA 1004
||||||||||||||||||||||||
Sbjct 964 TATTGATGGATCAGTCACTTACTA 987
> Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1
Length=798
Score = 1075 bits (582), Expect = 0.0
Identities = 651/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 178 CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 237
||||||| | |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 53 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 112
Query 238 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGT 297
||||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 113 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGAT 172
Query 298 GGGACACTGCCGGTCTATCCGCCGATCCC-GAGACCTTCGCTAGGAACCGTGAGCTAGAA 356
||||||| |||||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 173 GGGACACCGCCGGTCTATCCGCTGA-CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAA 231
Query 357 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTG 291
Query 417 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTC 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 292 GCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTC 351
Query 477 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTA 411
Query 537 GCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGA 596
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 412 GCCATTTGGGCTACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGA 471
Query 597 GATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTG 656
|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 472 AATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTG 531
Query 657 GGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 716
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 532 GGCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGG 591
Query 717 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 776
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 592 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 651
Query 777 CCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTTC 836
|| |||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 652 CCTTTGGAGAACCTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 711
Query 837 GCTACCAACTTCGTCCCCGGAAAGT 861
|| ||||||||||||||||||||||
Sbjct 712 GCCACCAACTTCGTCCCCGGAAAGT 736
> Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1
Length=1002
Score = 935 bits (506), Expect = 0.0
Identities = 727/835 (87%), Gaps = 9/835 (1%)
Strand=Plus/Plus
Query 36 TTTTAC-TTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCC 94
|||||| ||| || |||||| ||| ||||||||||||| || |||||||||||||| ||
Sbjct 37 TTTTACTTTGTGCTACACTC-AACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCC 95
Query 95 TG-CTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAACCG 153
|| ||| | ||||||||||||| ||||| ||||| ||||| || || || |||||| ||
Sbjct 96 TGCCTTCG-CCGGAAAGGCCGTCAAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCG 154
Query 154 GCCGAATCACCATGCGCAAAG-C--CT-CCAAGCCCACCGGTCCATCCGGCAGCCCATGG 209
|||| | || ||| | ||| | || ||||||| | || ||||| ||||||||||||
Sbjct 155 GCCGTGTGACAATGAG-GAAGACAACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGG 213
Query 210 TACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTC 269
|||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||||||
Sbjct 214 TACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTT 273
Query 270 ACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCGATCCCGAG 329
|| |||||||||||||| || ||||| |||||||| ||||| || || ||||| ||||||
Sbjct 274 ACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGACCCCGAG 333
Query 330 ACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCC 389
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 334 ACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCC 393
Query 390 CTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTT 449
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||
Sbjct 394 CTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTT 453
Query 450 TGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCG 509
||||||||||| || || |||||||||||||| ||||| | || |||||||| |||||
Sbjct 454 TGGTTCAAGGCCGGCTCTCAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 513
Query 510 AGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGA 569
|||||||||||||||||||||||||| || |||||||| |||||||||||| | ||||||
Sbjct 514 AGCTTGGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGA 573
Query 570 GCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTT 629
|| ||||| |||||||||||||| ||| |||| ||||||||||| || ||||||||||||
Sbjct 574 GCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTT 633
Query 630 TACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAG 689
||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||||| |||
Sbjct 634 TACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAG 693
Query 690 TTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTC 749
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 694 TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTC 753
Query 750 GTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCACTTGGCTGAT 809
||||| ||||||||||| || ||||||||| | |||||||| || ||||| ||||| |||
Sbjct 754 GTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGAT 813
Query 810 CCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 864
||||| | |||||| |||||||||||||| |||||||| || |||||||||||||
Sbjct 814 CCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 868
> Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1
Length=1008
Score = 928 bits (502), Expect = 0.0
Identities = 708/809 (88%), Gaps = 7/809 (1%)
Strand=Plus/Plus
Query 61 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTTTGACCGGAAAGGCCGTTAAG 119
||||||||||||| ||||||||||||||||| |||| ||| | |||||||||| || ||
Sbjct 51 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCG-CCGGAAAGGCTGTGAAC 109
Query 120 CTATCCCCGGCGGCCTCCGAAGTATTTGGAACCGGCCGAATCACCATGCGCAAAG-C--C 176
|| ||||| ||||| || ||||| |||||| |||||| | || ||| | ||| |
Sbjct 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 168
Query 177 T-CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 235
| ||||||| | |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 169 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTT 228
Query 236 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGG 295
||| |||||||| || ||||| ||||||||||| || |||||||||||||| || |||||
Sbjct 229 GGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 288
Query 296 GTGGGACACTGCCGGTCTATCCGCCGATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGA 355
|||||||| ||||| || || ||||| |||||||| ||||| |||||||||||||||||
Sbjct 289 ATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 348
Query 356 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATT 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 349 AGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTT 408
Query 416 GGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTT 475
||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 409 GGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTT 468
Query 476 CAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTT 535
|||||| ||||| | || |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 469 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTT 528
Query 536 AGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGG 595
|| |||||||| |||||||||||| | |||||||| ||||| |||||||||||||| ||
Sbjct 529 GGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGG 588
Query 596 AGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATT 655
| |||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 589 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATT 648
Query 656 GGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 715
||| | ||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 649 GGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 708
Query 716 AAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGG 775
||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 709 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 768
Query 776 ACCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTT 835
|||| | |||||||| || ||||| ||||| |||||||| | |||||| |||||||||||
Sbjct 769 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 828
Query 836 CGCTACCAACTTCGTCCCCGGAAAGTGAG 864
||| |||||||| || |||||||||||||
Sbjct 829 CGCCACCAACTTTGTTCCCGGAAAGTGAG 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5