BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34440.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482404 jgi|Araly1|482404|fgenesh2_kg.4__1464__AT2G34440.1         830    0.0  


> Ahg482404 jgi|Araly1|482404|fgenesh2_kg.4__1464__AT2G34440.1
Length=566

 Score =  830 bits (449),  Expect = 0.0
 Identities = 498/521 (96%), Gaps = 6/521 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC  60

Query  61   TTTTCAAAACGGAGGACTGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC  120
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTTCAAAACGGAGGACCGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC  120

Query  121  GCTGAGTTGGGCATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTGAGTTGGGTATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG  180

Query  181  AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT  240

Query  241  GAAGAAA-AAAGTGGTAATTACAGGCCTAAACTGAAGAGGCTGAGTGAACGTCTCGATTT  299
            ||| ||| ||||||||||  |||||||||||||||||||| ||||||||| |||||||||
Sbjct  241  GAA-AAAGAAAGTGGTAACAACAGGCCTAAACTGAAGAGGATGAGTGAACATCTCGATTT  299

Query  300  GCTCAACCAAGAGGTTGAAGCTGAGAAGGAA-CGAGGCGAGAA-GAGTCAGGAGAAGCTT  357
            ||||||||||||| |||||||||||||| || ||||| ||||  || |||||||||||||
Sbjct  300  GCTCAACCAAGAGATTGAAGCTGAGAAG-AATCGAGGTGAGACTGA-TCAGGAGAAGCTT  357

Query  358  GAATCTGCTGGGGATGAGAGATTCAAGGAGTCCATTGAGACGCTTACCCTCGATGAACTC  417
            ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct  358  GAATCTGCTGGGGATGAGAGATTCAAGAATTCCATTGAGACACTTACCCTCGATGAACTC  417

Query  418  AATGAATACAAAGATAGGCTTCAGACAGTCCATGGTAGGATTGAAGGTCAAGTCAATCAC  477
            |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  418  AATGAATACAAAGATAAGCTCCAGACAGTCCATGGTAGGATTGAATGTCAAGTCAATCAC  477

Query  478  TTGCAGGCTTCGTCTTGCCTCATGCTTCTCTCCAGAAAATA  518
             |||||||||||||||| |||||||||||||||||||||||
Sbjct  478  ATGCAGGCTTCGTCTTGTCTCATGCTTCTCTCCAGAAAATA  518


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 52/55 (95%), Gaps = 2/55 (4%)
 Strand=Plus/Plus

Query  646  AAATGAAAATGTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTGCTAAA  700
            |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  514  AAAT-AAAA-GTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTACTAAA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5