BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34440.1 Length=740 Score E Sequences producing significant alignments: (Bits) Value Ahg482404 jgi|Araly1|482404|fgenesh2_kg.4__1464__AT2G34440.1 830 0.0 > Ahg482404 jgi|Araly1|482404|fgenesh2_kg.4__1464__AT2G34440.1 Length=566 Score = 830 bits (449), Expect = 0.0 Identities = 498/521 (96%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 1 ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTCGGAGAAAGATCAAGATGGAGATGGTTCAGGACATGAACACACGACAGGTTACC 60 Query 61 TTTTCAAAACGGAGGACTGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTTCAAAACGGAGGACCGGTTTGTTCAAGAAGGCGAGCGAGTTAGCCACGCTCTGCAAC 120 Query 121 GCTGAGTTGGGCATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCTGAGTTGGGTATCGTTGTCTTTTCACCAGGAGGCAAGCCTTTCTCCTACGGGAAACCG 180 Query 181 AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCTTGATTCTGTTGCAGAGCGATTCATGAGAGAATATGATGATTCAGACAGTGGCGAT 240 Query 241 GAAGAAA-AAAGTGGTAATTACAGGCCTAAACTGAAGAGGCTGAGTGAACGTCTCGATTT 299 ||| ||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||| Sbjct 241 GAA-AAAGAAAGTGGTAACAACAGGCCTAAACTGAAGAGGATGAGTGAACATCTCGATTT 299 Query 300 GCTCAACCAAGAGGTTGAAGCTGAGAAGGAA-CGAGGCGAGAA-GAGTCAGGAGAAGCTT 357 ||||||||||||| |||||||||||||| || ||||| |||| || ||||||||||||| Sbjct 300 GCTCAACCAAGAGATTGAAGCTGAGAAG-AATCGAGGTGAGACTGA-TCAGGAGAAGCTT 357 Query 358 GAATCTGCTGGGGATGAGAGATTCAAGGAGTCCATTGAGACGCTTACCCTCGATGAACTC 417 ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 358 GAATCTGCTGGGGATGAGAGATTCAAGAATTCCATTGAGACACTTACCCTCGATGAACTC 417 Query 418 AATGAATACAAAGATAGGCTTCAGACAGTCCATGGTAGGATTGAAGGTCAAGTCAATCAC 477 |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| Sbjct 418 AATGAATACAAAGATAAGCTCCAGACAGTCCATGGTAGGATTGAATGTCAAGTCAATCAC 477 Query 478 TTGCAGGCTTCGTCTTGCCTCATGCTTCTCTCCAGAAAATA 518 |||||||||||||||| ||||||||||||||||||||||| Sbjct 478 ATGCAGGCTTCGTCTTGTCTCATGCTTCTCTCCAGAAAATA 518 Score = 84.2 bits (45), Expect = 1e-15 Identities = 52/55 (95%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 646 AAATGAAAATGTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTGCTAAA 700 |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 514 AAAT-AAAA-GTACCTGGAAATTTGTCTGTATTAATCTCAAGTGTACTTACTAAA 566 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27257885655 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5