BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34450.2
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482406 jgi|Araly1|482406|fgenesh2_kg.4__1466__AT2G34450.2 972 0.0
Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539 261 5e-69
Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399 255 2e-67
> Ahg482406 jgi|Araly1|482406|fgenesh2_kg.4__1466__AT2G34450.2
Length=646
Score = 972 bits (526), Expect = 0.0
Identities = 610/650 (94%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 29 GAGAAAGTGAGAGAAAATGACGAAGAGAGCTCCCAAGTCAGGGCCTTTGTCTCCGTCGTG 88
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAGAAAGTGAGAGAAAATGACGAAGAAAGCTCCCAAGTCAGGGCCTTTGTCTCCGTCGTG 60
Query 89 CAGCGGAGGCTCTAGTCGGAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGGTGCAAGGAG 148
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 CAGCGGAGGCTCTAGTCGGAACTTCGATTTGGCTGTGAAGTCAAGTGAAGGTGCAAGGAG 120
Query 149 GTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAAGAAGAA-A- 206
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |
Sbjct 121 GTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAAGAAGAAGAA 180
Query 207 -CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTTCTTTTTCCT 265
|||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
Sbjct 181 ACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTTCTTTTTCTT 240
Query 266 GGATGATTTCCGGAAGCAATATCAAGAGGAGAATCCAGATGTCAAGTCCATGCGCGAGGT 325
||| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 241 GGAGGATTTCCGGAAACAATATCAAGAGGAGAATCCGGAGGTCAAGTCCATGCGTGAGGT 300
Query 326 TATTGGGAAGACATGTGGAGAGAAATGGAAAACAATGACTTACGAGGAAAAGGTAAAGTA 385
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 301 TATTGGGAAGACATGTGGAGAGAAATGGAAAACAATGACATACGAGGAAAAGGTGAAGTA 360
Query 386 TTATGATATAGCTACTGAGAAGAGGGAAGAATTTCACCGAGCAATGACAGAATATACCAA 445
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 TTATGATATAGCCACTGAGAAGAGGGAGGAATTTCACCGAGCAATGACAGAATATACCAA 420
Query 446 GAGAATGGAATCAGGTGCCCACGATGAATCAGAGACCGACTCAGACTATTCTGAATAGAT 505
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GAGAATGGAATCAGGTGGATACGATGAATCAGAGACCGACTCAGAATATTCTGAATAGAT 480
Query 506 TACTTTTTAGTTTCTACCACATTAGAAACATTGTTCTAAGCCTTCTAGGATGGGTTTGTA 565
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TACTTTTTGGTTTTTACCACATTAGAAACATTGTTTTAAGCCTTCTAGGATGGGTTTGTA 540
Query 566 TATCGGTGATATTTAAGA-GTTTCTGTTTCGTTTTTGAGATCATTCTTTCACTGATACTC 624
||||||||||||||| || |||||||||||||| |||||||| ||||| ||| |||||
Sbjct 541 TATCGGTGATATTTA-GAAGTTTCTGTTTCGTT---GAGATCATACTTTCCCTGGTACTC 596
Query 625 ATGTTTCTGTGGATTGCATTTGGAGATCAATGAATACTAACCAGTTTCTT 674
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTGCTTCTGTGGATTGCATTTGGAGATCAATGAATACTAACCAGTTTCTT 646
> Ahg915788 jgi|Araly1|915788|Al_scaffold_0008_539
Length=735
Score = 261 bits (141), Expect = 5e-69
Identities = 173/187 (93%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 84 TCGTGCAGCGGAGGCTCTAGTC-G---GAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 139
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 195 TCGTGCAGCGGAGGCTCTAGTCGGTAAGAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 254
Query 140 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAA 199
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 255 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAA 314
Query 200 GAAGAA-A--CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTT 256
|||||| | |||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 315 GAAGAAGAAACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTT 374
Query 257 CTTTTTC 263
|||||||
Sbjct 375 CTTTTTC 381
> Ahg913145 jgi|Araly1|913145|Al_scaffold_0001_3399
Length=726
Score = 255 bits (138), Expect = 2e-67
Identities = 172/187 (92%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 84 TCGTGCAGCGGAGGCTCTAGTC-G---GAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 139
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 189 TCGTGCAGCGGAGGCTCTAGTCGGTAAGAACTTAGAGTTGGATGTGAAGTCAAGTGAAGG 248
Query 140 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAA 199
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 249 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAA 308
Query 200 GAAGAA-A--CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTT 256
|||||| | |||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 309 GAAGAAGAAACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTT 368
Query 257 CTTTTTC 263
|||||||
Sbjct 369 CTTTTTC 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25161125220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5