BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34470.2
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901275 jgi|Araly1|901275|Al_scaffold_0004_1925 1419 0.0
Ahg482407 jgi|Araly1|482407|fgenesh2_kg.4__1467__AT2G34460.1 329 2e-89
> Ahg901275 jgi|Araly1|901275|Al_scaffold_0004_1925
Length=837
Score = 1419 bits (768), Expect = 0.0
Identities = 815/837 (97%), Gaps = 6/837 (1%)
Strand=Plus/Plus
Query 95 ATGGCATCACACG---ACCA-C--CATCATCATCATCACGATCATGAGCATGACCACGAT 148
||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGCATCACACGACCACCATCATCATCATCATCATCACGATCATGAGCATGGCCACGAT 60
Query 149 AGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGGGAAGGTGTAC 208
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGGAAATCGGACGGCGGAGAAGGGAAGTCGTCGTGGGTGGGGAAGGACGGGAAGGTGTAC 120
Query 209 CATAGCCACGATGGACTCGCACCTCACTCACACGAACCCATCTACTCTCCTGGCTACTTC 268
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATAGCCACGATGGACTGGCACCTCACTCACACGAACCCATCTACTCTCCTGGCTACTTC 180
Query 269 AGTCGCCGAGCTCCTCCGCTTCACGACCGTAACTTCTCTGAGAGAGCTTTTACCGTCGGT 328
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 181 AGTCGCCGAGCTCCTCCGCTTAACGACCGTAACTTCTCCGAGAGAGCTTTTACCGTCGGT 240
Query 329 ATTGGCGGTCCCGTTGGCACTGGGAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTG 388
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGGCGGCCCCGTTGGCACTGGGAAAACGGCATTGATGCTTGCTCTTTGTAGATTCTTG 300
Query 389 AGGGACAAATATAGTCTTGCTGCTGTGACAAATGATATATTCACGAAAGAGGATGGTGAG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGGGACAAATATAGTCTTGCTGCTGTGACAAATGATATATTCACGAAAGAGGACGGTGAG 360
Query 449 TTTCTGGTGAAGAATGGGGCTCTTCCTGAGGAAAGGATTAGAGCTGTTGAAACAGGTGGA 508
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 TTCCTGGTGAAGAATGGGGCTCTTCCTGAGGAAAGGATTAGAGCTGTTGAAACTGGTGGA 420
Query 509 TGTCCACACGCTGCTATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTA 568
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTCCACACGCTGCCATCCGTGAAGATATCAGTATCAATTTGGGTCCTCTTGAGGAGTTA 480
Query 569 TCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGATAATTTAGCTGCT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTAACTTATTCAAGGCTGATTTGCTTCTTTGTGAATCCGGTGGAGATAATTTAGCTGCT 540
Query 629 AATTTCAGTAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGAT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATTTCAGTAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGAT 600
Query 689 AAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGGTGATAAACAAG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGGTGATAAACAAG 660
Query 749 ACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTCATGGAAAGGGATTCACTACGC 808
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 661 ACAGACCTTGCAGCAGCTGTTGGGGCTGACTTATCTGTCATGGAAAGGGATGCACTACGC 720
Query 809 ATGCGTGATGGAGGGCCATTTGTCTTTGCTCAGGTGAAGCATGGGCTTGGAGTCGAGGAA 868
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 ATGCGTGATGGAGGGCCATTTGTCTTTGCTCAGGTGAAGCATGGGCTTGGGGTCGAGGAA 780
Query 869 ATCGTGAACCATGTCATGCACTCATGGGAACATGCGACCGGGAAGAAGCGCCAGTGA 925
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 ATCGTGAACCATGTCATGCACTCATGGGAACATGCGACTGGGAAGAAGCGCCAGTGA 837
> Ahg482407 jgi|Araly1|482407|fgenesh2_kg.4__1467__AT2G34460.1
Length=1121
Score = 329 bits (178), Expect = 2e-89
Identities = 209/223 (94%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 867 AAATCGTGAACCATGTCATGCACTCATGGGAACATGCGACCGGGAAGAAGCGCCAGTGAT 926
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1121 AAATCGTGAACCATGTCATGCACTCATGGGAACATGCGACTGGGAAGAAGCGCCAGTGAT 1062
Query 927 GATGGGGTTCTTAAGACCCAAAATGGATAAGATATGAAACTGAATGGAACTCTTTCAATA 986
| || | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1061 G--GGC-T-CTTAAGACCCAAAATGGATAAGAGATGAAACTGAATGGAACTCTTTCAATA 1006
Query 987 CTTATCTTGAACTCAATTTATGCGCAAAAGTCTATGTAATCTGTTTGTTGTACTCAAGAC 1046
|||||||||||||| ||||| ||||||||| |||||| |||||||||||||| ||||||
Sbjct 1005 CTTATCTTGAACTCGGTTTATTCGCAAAAGTTTATGTA-TCTGTTTGTTGTACGCAAGAC 947
Query 1047 ATAAGAGAAATAAAAGGTTTGAGCATGAGACTCATTACATTCT 1089
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 946 ATAAGAGAAATAAAAGTTTTGAGCATGAGACTCATTACATTCT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40600906605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5