BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34480.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482410 jgi|Araly1|482410|fgenesh2_kg.4__1470__AT2G34480.1 1269 0.0
Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2 584 3e-166
Ahg478879 jgi|Araly1|478879|fgenesh2_kg.3__1580__AT3G14600.1 496 1e-139
> Ahg482410 jgi|Araly1|482410|fgenesh2_kg.4__1470__AT2G34480.1
Length=802
Score = 1269 bits (687), Expect = 0.0
Identities = 766/803 (95%), Gaps = 9/803 (1%)
Strand=Plus/Plus
Query 1 TCATTTATAAAGAAGAAGAACCCTAGCCGC-T-TA--TATTTGGTTGAGGTTTCCACCGC 56
||||||||||| ||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 1 TCATTTATAAACTAGAAGAACCCTAGCCGCATATATTTATTTGGTTGAGGTTTCTACCGC 60
Query 57 ATTGTCTCTCTCCAGACGAAAAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTGTGGG 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGTCTCTCTCCAGACGAAAAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTGTGGG 120
Query 117 AAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGATTTACAGGATGAAGCTCTGGGC 176
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AAGAGCTCTACCGACAGAGAAGGATGTGCAGCCTAAGATTTACCGGATGAAGCTCTGGGC 180
Query 177 TACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAGGT 236
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATTTCTTAAGGAAGCTCAAGAAGGT 240
Query 237 GAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGATCTATGAGAAGAACCCAACAAC 296
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CAAGAAGAGTAACGGACAGATGCTCGCCATCAACGAGATCTATGAGAAGAATCCAACAAC 300
Query 297 GATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTAGAACTGGGTACCACAACATGTA 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGCAGAACTGGGTACCACAACATGTA 360
Query 357 CAAGGAGTACCGTGACACCACTCTTAACGGAGCTGTTGAGCAGATGTACACTGAGATGGC 416
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 CAAGGAATACCGTGACACCACTCTTAACGGAGCTGTTGAACAGATGTACACTGAGATGGC 420
Query 417 ATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCAGC 476
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 TTCTCGTCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCTGC 480
Query 477 CAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCACAACAGCAAGATCAAGTTCCCATT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCACAACAGCAAGATCAAGTTCCCATT 540
Query 537 GGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA 600
Query 597 GCCCAACTTGTTCATGTAAAACGTCTCTGATTGACTCTTTTTTGGGGTGGAATCGATGTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCCAACTTGTTCATGTAAAACGTCTCTGATTGACTCTTTTTTGGGGTGGAATCGATGTT 660
Query 657 GAAGCTGTGCTCTCTCCCGTTTTGGAT-TTTATCGGTTATTTTTGTTT-T--TCAATATG 712
|||||| |||||||| ||||| ||| ||| |||| ||||||||||| | ||||||||
Sbjct 661 GAAGCTATGCTCTCTGTTGTTTTTGATCTTT-TCGGATATTTTTGTTTATCATCAATATG 719
Query 713 TTAGGCGTACTCATGAATGTGAACTCGACTTTGTCTGGATTTTATGCTTCTTGTTTCCTA 772
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 720 TTAGGCGTACTCATGAAACTCAACTCGACTTTGTCTGGATTTTATGGTTCTTGTTTCCTG 779
Query 773 CTTATGAAAAAACCTTTCCCTTA 795
|||||||||||| ||||||||||
Sbjct 780 CTTATGAAAAAAACTTTCCCTTA 802
> Ahg473214 jgi|Araly1|473214|fgenesh2_kg.1__3168__AT1G29970.2
Length=966
Score = 584 bits (316), Expect = 3e-166
Identities = 454/522 (87%), Gaps = 4/522 (1%)
Strand=Plus/Plus
Query 95 TTCACCAGTACCAGGTTGTGGGAAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGA 154
||||||||||||| || || ||||||||||||||||| ||||| |||| |||||| ||||
Sbjct 444 TTCACCAGTACCAAGTCGTAGGAAGAGCTCTCCCGACGGAGAAAGATGAGCAGCCGAAGA 503
Query 155 TTTACAGGATGAAGCTCTGGGCTACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATT 214
| |||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
Sbjct 504 TCTACAGGATGAAGCTTTGGGCTACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 563
Query 215 TCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGA 274
|||| |||| || |||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 564 TCTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGTTAGCTATCAACGAGA 623
Query 275 TCTATGAGAAGAACCCAACAACGATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTA 334
||| ||||||||||||||||||||||||||| || || || |||||||| |||||||||
Sbjct 624 TCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGTC 683
Query 335 GAACTGGGTACCACAACATGTACAAGGAGTACCGTGACACCACTCTT-AACGGAGCTGTT 393
| ||||| ||||| |||||||||||||||| |||||||| ||| || |||||||| ||
Sbjct 684 GTACTGGTTACCATAACATGTACAAGGAGTTTCGTGACACAACT-TTGAACGGAGCAGTG 742
Query 394 GAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATC 453
||||| ||||||||||||||||| || | ||| | ||||| |||||||||||||||||
Sbjct 743 GAGCAAATGTACACTGAGATGGCGTCAAGACACAGAGTCAGGTTCCCTTGCATTCAGATT 802
Query 454 ATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCAC 513
||||||||||| || ||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 803 ATCAAGACAGCTACAGTCCCAGCCAACCTCTGCAAGAGAGAGAGCACTAAGCAGTTTCAT 862
Query 514 AACAGCAAGATCAAGTTCCCATTGGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTG 573
|||||||||||||||||||| ||||| ||| | ||||||||||| || | ||| |||||
Sbjct 863 AACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTC 922
Query 574 AAGACGAC-TTACAAGGCCAACAAGCCCAACTTGTTCATGTA 614
||||| || || ||||||| |||||| |||||||| |||||
Sbjct 923 AAGACTACCTT-CAAGGCCTCCAAGCCTAACTTGTTTATGTA 963
> Ahg478879 jgi|Araly1|478879|fgenesh2_kg.3__1580__AT3G14600.1
Length=672
Score = 496 bits (268), Expect = 1e-139
Identities = 456/546 (84%), Gaps = 16/546 (3%)
Strand=Plus/Plus
Query 77 AAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTG-TGGGAAGAGCTCTCCCGACAGAG 135
|||||||||||||| |||||||||| ||||| || | |||| ||||| |||||||| |||
Sbjct 68 AAATGGGTGCTTTCCGGTTTCACCAATACCAAGTGGTTGGG-AGAGCCCTCCCGACTGAG 126
Query 136 AAGGATGTGCAGCCTAAGATTTACAGGATGAAGCTCTGGGCTACG-AACGAGGT-TCGTG 193
|| |||| ||| |||||||| |||||||||||||| |||| || | || || || | | |
Sbjct 127 AAAGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTA-GAAATGAAGTAT-GCG 184
Query 194 CCAAGTCCAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGAC 253
||||||||||||| ||||| ||| ||||||| | |||||||| ||||| || || ||||
Sbjct 185 CCAAGTCCAAGTTTTGGTACTTCATGAGGAAATTGAAGAAGGTCAAGAAAAGCAACGGAC 244
Query 254 AGATGCTCGCCATCAACGAGATCTAT-GAGAAGAACCCAACAACGATCAAGAACTTCGGT 312
||||||| |||||||| ||||| | | |||||||| || || || |||||||||| ||||
Sbjct 245 AGATGCTTGCCATCAATGAGAT-TTTCGAGAAGAATCCTACGACAATCAAGAACTACGGT 303
Query 313 ATTTGGTTGAGGTACCAGAGTAGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 372
|| ||| || | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 ATCTGGCTGCGATATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 363
Query 373 ACCACTCTTAACGGAGCTGTTGAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTC 432
|| || || || || | || ||||||||||||||||||||||| || ||||| | ||
Sbjct 364 ACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCATAGAGTG 423
Query 433 AGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGA 492
|| |||||||||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 424 AGGTTCCCTTGCATTCAGATCATCAAGACTGCAACAGTCCCTGCAAAGCTGTGCAAGAGA 483
Query 493 GAGAGCACTAAACAGTTCCACAACA-GCAAGATCAAGTTCCCA-TTGGTGTTCCGCAAGG 550
|||| ||| || |||||||||||| | |||||||||||||| ||| | ||| | ||||
Sbjct 484 GAGATCACCAAGCAGTTCCACAACTCG-AAGATCAAGTTCCCTCTTGTT-TTCAGAAAGG 541
Query 551 TTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA-GCCCAAC-TTGTT 608
| |||||||||| ||||||||||||||| || |||||||| | ||| ||| ||| || ||
Sbjct 542 TCAGACCACCAACCAGGAAGCTGAAGACTACATACAAGGC-ATCAAAGCCTAACCTT-TT 599
Query 609 CATGTA 614
||||||
Sbjct 600 CATGTA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5