BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34490.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934047 jgi|Araly1|934047|scaffold_402035.1 2091 0.0
Ahg934048 jgi|Araly1|934048|scaffold_402036.1 1295 0.0
Ahg933351 jgi|Araly1|933351|scaffold_401339.1 1077 0.0
> Ahg934047 jgi|Araly1|934047|scaffold_402035.1
Length=1545
Score = 2091 bits (1132), Expect = 0.0
Identities = 1411/1549 (91%), Gaps = 6/1549 (0%)
Strand=Plus/Plus
Query 37 AAGAAAGAAGAGGaaaaaaaaGGATGGTTTTCTCAGTTTCCATTTTTGCCTCTCTCGCTC 96
||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||| |
Sbjct 1 AAGAAAGAAGAAGAAAAAAAAAAATGGCTTTCTCAGTTTCCAGATTTGCCTCTCTCGCAC 60
Query 97 CGTACTTAGTCTCTGCGTTACTACTCTTCTTTCTCATCGAGCAGCTCTCTTACCTCGTCA 156
| |||||||||||| |||||| |||||| |||| |||||||| |||||||||| ||||
Sbjct 61 CATACTTAGTCTCTTTGTTACTTCTCTTCCTTCTAATCGAGCAAATCTCTTACCTTGTCA 120
Query 157 AGAAACGTAACCTCCCTGGTCCTCTCTTTGTCCCTCCGATCATCGGAAACGCCATTTCAC 216
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGAAACGTAACCTCCCTGGCCCTCTCTTTGTCCCTCCGATCATCGGAAACGCCGTTTCAC 180
Query 217 TCGTCCGTGATCCTACTTCCTTCTGGTTCAAGCAATCCGAC-ACGGCAGGCACTTCCCCT 275
|||| ||||| || ||||||||||||| ||||||||||| | ||||| |||||||||| |
Sbjct 181 TCGTTCGTGACCCAACTTCCTTCTGGTACAAGCAATCCG-CAACGGCGGGCACTTCCCGT 239
Query 276 GGCCTCGCTGCTAACTACCTCATCGGCAAATTCATCATCTACATCAGAGACACAGAGCTT 335
|||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 240 GGCCTCTCTGCCAACTACCTCATCGGAAAATTCATCATCTACATCAGAGACACTGAGCTT 299
Query 336 TCTCATCAAATATTCTCCAACGTTCGTCTTGAA-GCTTTTCACCCTCTAGGACATCCTTT 394
|| |||||||| ||||||||||| ||| | || || ||||||||||| |||||||||||
Sbjct 300 TCCCATCAAATCTTCTCCAACGTGGGTC-TCAATGCATTTCACCCTCTCGGACATCCTTT 358
Query 395 TGGCAAACAACTATTCGGTGATCATAGCCTAATCTACTTGTTTGGTGAGGATCACAAAAC 454
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 TGGCAAACAACTCTTCGGCGATCATAGCCTAATCTACTTGTTCGGTGAGGATCACAAAAC 418
Query 455 TGTTCGCCGTCACCTTGCTCCTAACTTCACCCCCAAGGCACTCTCCACTTACTCTGATCT 514
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGTTCGCCGTCACCTTGCTCCCAACTTCACCCCCAAGGCACTCTCCACTTACTCTGATCT 478
Query 515 CCAACAAATAGTTATGCTCCGTCATCTACGACAGTGGGAGGAAAGTTTCTCCGGCGGAAC 574
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 TCAACAAATAGTTATGTTCCGTCATCTACGACAGTGGGAGGAAAGTTTCTCTGGCGGAAC 538
Query 575 TAAGCCGGTTTCTATGCGAGACCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACGGT 634
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 539 TAAGCCGGTTTCTATGCGAGATCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACTGT 598
Query 635 TTTCGTTGGACCCTACCTTGACAAGGAAGCTAGGAACACGTTCTGTACTGATTACAATCT 694
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 599 TTTCGTTGGACCCTACCTTGACAAAGAAGCTAGAAACACGTTCCGTACTGATTACAATCT 658
Query 695 GTTCAATCTCGGATCTATGGCGCTCCCGATCAACCTGCCCGGCTTTGCGTTCAACAAGGC 754
||||||| | || || |||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 659 GTTCAATGTTGGTTCCATGGCGCTCCCGATCAACCTACCTGGCTTTGCGTTCAGCAAGGC 718
Query 755 TCGCCGGGCGGTAATGAACCTGGAGAAGACGCTCTCCGTCTGTGCGGGAAAATCCAAAAA 814
|||||||||||| |||||||| ||| |||| |||||||||||||| |||||||||||| |
Sbjct 719 TCGCCGGGCGGTGATGAACCTTGAGGAGACACTCTCCGTCTGTGCCGGAAAATCCAAAGA 778
Query 815 GAGGATGGCTACAGGAGAGGAGCCAACATGCTTAATCGATTTTTGGATGCATGCATTCGT 874
|| |||||| ||||| |||||||||| |||| |||||||||| |||||||||||| ||||
Sbjct 779 GAAGATGGCGACAGGGGAGGAGCCAAAATGCCTAATCGATTTCTGGATGCATGCAATCGT 838
Query 875 CACGGAGATAGAATCCGGTAATCCACCGCCGCTTCACTCCGAAGACGAAGCCATCGGCGG 934
||||||||||||||| |||||||| || || |||||||||||||||||||| ||||| ||
Sbjct 839 CACGGAGATAGAATCTGGTAATCCGCCACCACTTCACTCCGAAGACGAAGCAATCGGTGG 898
Query 935 TTTGCTCTTCGATTTTCTCTTTGCCGCACAAGACGCGTCGACGTCATCACTCCTTTGGGC 994
||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 899 TTTGCTCTTTGATTTTCTCTTCGCTGCACAAGACGCGTCGACATCATCACTCCTTTGGGC 958
Query 995 GGTGACGTTTCTAGAATCTCATCCGAAAGTGCTGAGCAAAGTGAGGGAGGAAGTGGCCAA 1054
|||| ||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 959 GGTGGCGTTTCTTGAATCTAATCCGGAAGTGCTTAGCAAAGTGAGGGAGGAAGTGGCCAA 1018
Query 1055 GATTTGGTCACCTCAGTCTGGCCATCTGATCACGGCCGATCAGCTCGCGGAGATGAAGTA 1114
||||||||| ||| |||| ||| | || ||||||||||||||||||||||||||||||||
Sbjct 1019 GATTTGGTCGCCTGAGTCCGGCGAGCTTATCACGGCCGATCAGCTCGCGGAGATGAAGTA 1078
Query 1115 TACTCGCGCTGTGGCACGTGAGGTGGTGAGATATCGACCACCGGCAACTATGGTCCCACA 1174
|| ||||| || || ||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 1079 CACGCGCGCCACAGCTCGCGAGGTCGTGAGATACCGACCACCGGCAACAATGGTCCCGCA 1138
Query 1175 CATTGCTACTAATGATTTCCCTCTTACAGAATCGTACACTATCCCAAAAGGTACAATAGT 1234
||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 1139 CATTGCTACTAATGATTTCCCGCTCACGGAATCGTACACAATCCCAAAAGGTACAATCGT 1198
Query 1235 GTTTCCCTCGGTTTTCGACGCCTCGTTTCAAGGGTTTACTGAACCGAACCGGTTCGATCC 1294
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1199 TTTTCCCTCGGTTTTCGACTCATCGTTCCAAGGGTTTACTGAACCGAACCGGTTCGATCC 1258
Query 1295 GGACCGGTTTAGTGAGACAAGGCAAGAGGATCAAGTGTTCAAACGAAACTACCTAGCTTT 1354
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1259 GGACCGGTTTAGCGAGACAAGGCAAGAGGATCAAGTATTCAAACGCAACTACCTAGCTTT 1318
Query 1355 TGGATGGGGTGCACACCAATGCGTAGGCCAGCGTTACGCATTGAACCACCTCGTGCTCTT 1414
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct 1319 TGGATGGGGTGCGCACCAGTGCGTAGGCCAGCGTTACGCGCTGAACCACCTCGTTCTCTT 1378
Query 1415 CATCGCTATGTTCTCATCGTTGTTTGATTTCAAGAGACTTCAATCGGACGGTTGCGATGA 1474
|||||| |||||||| || ||||||||||||||||| |||||| | ||||| ||||||||
Sbjct 1379 CATCGCAATGTTCTCCTCTTTGTTTGATTTCAAGAGGCTTCAAACTGACGGCTGCGATGA 1438
Query 1475 CATCATATACTGTCCCACGATATCGCCAAAGGACGGGTGCACGGTGTTCTTGTCTAAGCG 1534
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1439 CATCATATACTGCCCCACGATATCGCCGAAGGACGGGTGCACGGTCTTCTTGTCTAAGCG 1498
Query 1535 CATCGTAACGTATCCGAACCTCTGATTTGGATTTTTGTTACAAATTATT 1583
| ||||||| ||||||||||| ||||| |||||||| ||| ||||||||
Sbjct 1499 CGTCGTAACTTATCCGAACCTTTGATT-GGATTTTTATTA-AAATTATT 1545
> Ahg934048 jgi|Araly1|934048|scaffold_402036.1
Length=1534
Score = 1295 bits (701), Expect = 0.0
Identities = 1256/1519 (83%), Gaps = 57/1519 (4%)
Strand=Plus/Plus
Query 60 ATGGTTTTC-TCAGTTTCCATTTTTGCCTCTCTCGCTCCGTACTTAGTCTCTGCGTTACT 118
||||||||| | || ||| || ||||||||||||| || |||||| |||| || |||||
Sbjct 21 ATGGTTTTCAT-AGCTTCTATAATTGCCTCTCTCGCACCATACTTAATCTCAGCATTACT 79
Query 119 ACTCTTCTTTCT-CATCGAGC-AGCTCTCTTACCTCGTCAAGAAACGTAACCTCCCTGGT 176
|||||| |||| | |||||| || ||||||||||| |||||||||| ||| |||||||
Sbjct 80 TCTCTTCCTTCTGC-TCGAGCAAG-TCTCTTACCTCTTCAAGAAACGAAACATCCCTGGC 137
Query 177 CCTCTCTTT-GTCCCTCCGATCATCGGAAACGCCATTTCACTCGTCCGTGATCCTACTTC 235
||||| ||| |||||||| || ||||| |||||| || |||||||||||||||| |||||
Sbjct 138 CCTCT-TTTCGTCCCTCCTATTATCGGCAACGCCGTTGCACTCGTCCGTGATCCCACTTC 196
Query 236 CTTCTGGTTCAAGCAATCCGACACGGCAGGCACTTCCCCTGGCCTCGCTGCTAACTACCT 295
||||||| ||||||||||| | |||| |||| | | |||||| | || ||||||||
Sbjct 197 CTTCTGGGACAAGCAATCCGCCTCGGCTGGCAAAT---CAGGCCTCTCCGCCAACTACCT 253
Query 296 CATCGGCAAATTCATCATCTACATCAGAGACACAGAGCTTTCTCATCAAATATTCTCCAA 355
||| || |||||||| |||| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 254 CATAGGAAAATTCATTGTCTATATCAGAGACACAGAGCTTTCCCATCAAATCTTCTCAAA 313
Query 356 CGTTCGTCTTGAAGCTTTTCACCCTCTAGGACATCCTTTTGGCAAACAA-CTATTCGGTG 414
|||||||| || || || |||| | |||| ||||| ||||| || || || |||||||
Sbjct 314 CGTTCGTCCCGATGCCTTCCACCTTATAGGCCATCCCTTTGG-TAAGAAGCTCTTCGGTG 372
Query 415 ATCATAGCCTAATCTACTTGTTTGGTGAGGATCACAAAACTGTTCGCCGTCACCTTGCTC 474
| || | ||| || ||| |||| ||||| ||||||||| | |||||||| || || ||||
Sbjct 373 ACCACAACCTCATTTACATGTTCGGTGAAGATCACAAATCCGTTCGCCGCCAGCTAGCTC 432
Query 475 CTAACTTCACCCCCAAGGCACTCTCCACTTACTCTGATCTCCAACAAATAGTTATGCTCC 534
|||||||||||||||||||||| ||||| ||||||| ||||| | | ||||||| ||||
Sbjct 433 CTAACTTCACCCCCAAGGCACTGTCCACCTACTCTGCCCTCCAGCGATTAGTTATCCTCC 492
Query 535 GTCATCTACGACAG-TGGGAGGAAAGTTTCTCCGGCGGAACTAAG-CCGGTTTCTA-TGC 591
|||||||||| | | |||||||| ||| |||||| ||| || | || || || | |||
Sbjct 493 GTCATCTACGGC-GATGGGAGGAGAGTACCTCCGGTGGATCT-CGTCCAGTGTC-ACTGC 549
Query 592 GAGACCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACGGTTTTCGTTGGACCCTACC 651
|| ||||||||||||||||||| || || ||||| || ||||||||||||||||| ||||
Sbjct 550 GACACCTTGTCCGTGAACTCAACCTCGAAACTTCCCAGACGGTTTTCGTTGGACCTTACC 609
Query 652 TTGACAAGGAAGCTAGGAACACGTTCTGTACTGATTACAATCTGTTCAATCTCGGATCTA 711
||||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 610 TTGACAAGGAAGCCAAGAACAGGTTCCGTACTGATTACAATCTGTTCAATCTCGGATCCA 669
Query 712 TGGCGCT-CCCGATCAACCTGCCC-GGCTT-TGCGTTCAACAAGGCTCGCCGGGCGGTAA 768
||||||| ||| ||| |||| ||| ||||| | ||||| | ||||||||||||| |||
Sbjct 670 TGGCGCTTCCC-ATCGACCT-CCCTGGCTTCT-CGTTCGGCGAGGCTCGCCGGGCAGTAG 726
Query 769 TGAACCTGGAGAAGACGCTCTCCGTCTGTGCGGGAAAATCCAAAA-AGAGGATGGCTAC- 826
|| || | | |||||||| || |||| || |||||||||||| | |||||||| |
Sbjct 727 CGAGGCTAGCGGAGACGCTCGCCATCTGCGCAGGAAAATCCAAAGCA-AGGATGGC-AGG 784
Query 827 AGGAGAGGAGCCAACATGCTTAATCGATTTTTGGATGCATGC-ATTCGTCACGGAGATAG 885
|||||| || ||||||||| |||||||||| |||||||| || || | |||||||| |
Sbjct 785 AGGAGAAGAACCAACATGCCTAATCGATTTCTGGATGCAGGCGATA-GCCACGGAGA-A- 841
Query 886 AATCCGGTAATCCACCGCCGCTTCACTCCGAAGACGAAGCCATCGGCGGTTTGCTCTTCG 945
|||| || || || | | |||| |||||||| |||||||||||||||||||
Sbjct 842 --TCCG-----CCGCCACCACAT---TCCGGAGACGAAGAGATCGGCGGTTTGCTCTTCG 891
Query 946 ATTTTCTCTTTGCCGCACAAGACGCGTCGACGTCATCACTCCTTTGGGCGGTGACGTTTC 1005
|||||||||||||||| || |||||||| ||||||||||| || ||||| |||||||| |
Sbjct 892 ATTTTCTCTTTGCCGCGCAGGACGCGTCCACGTCATCACTGCTCTGGGCCGTGACGTTGC 951
Query 1006 TAGAATCTCATCCGAAAG-TGCTGAGCAAAGTGAGGGAGGAAGTGGCCAAGATTTGGTCA 1064
| ||||| | || | || |||||| || ||| || |||||||| |||||||| ||| ||
Sbjct 952 TTGAATCAGAGCC-AGAGGTGCTGAACAGAGTAAGAGAGGAAGTAGCCAAGATCTGGCCA 1010
Query 1065 CCTCAGTCTG--GCCATCTGATCACGGCCGATCAGCTCGCGGAGATGAAGTATACTCGCG 1122
|| |||| ||| | ||||||| | ||||||||||| ||||||||||| || |||
Sbjct 1011 CCGGAGTCAAACGCC-T-TGATCACCGTTGATCAGCTCGCAGAGATGAAGTACACGCGCT 1068
Query 1123 CTGTGGCACGTGAGGTGGTGAGATATC-GACCACCGGCAACTATGGTCCCACACATTGCT 1181
| || || |||||||| |||||||| | | || ||||||||||||||||||||| | |||
Sbjct 1069 CCGTAGCGCGTGAGGTCGTGAGATA-CAGGCCTCCGGCAACTATGGTCCCACACGTCGCT 1127
Query 1182 ACTA-ATGATTTCCCTCTTACAGAATCGTACACTATCCCAAAAGGTACAATAGTGTTTCC 1240
||| | || |||||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 1128 GCTACA-GACTTCCCTCTCACGGAATCGTACACTATCCCCAAAGGTACAATAGTCTTTCC 1186
Query 1241 CTCGGTTTTCGACGCCTCGTTTCAAGGGTTTACTGAACCGAACCGGTTCGATCCGGACCG 1300
|||||||||||| ||||||| ||||||||||| |||||| ||||||| ||||| |||||
Sbjct 1187 TTCGGTTTTCGACTCCTCGTTCCAAGGGTTTACCGAACCGGACCGGTTTGATCCTGACCG 1246
Query 1301 GTTTAGTGAGACAAGGCAAGAGGATCAAGTGTTCAAACGAAACTACCTAGCTTTTGGATG 1360
||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||
Sbjct 1247 ATTTAGCGAGACAAGACAAGAGGACCAGGTGTTCAAACGCAACTTCCTAGCTTTTGGATG 1306
Query 1361 GGGTGCA-CACCAATGCGTAGGCCAGCGTTACGCATTGAACCACCTCGTGCTCTTCATCG 1419
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1307 GGG-GCCTCACCAATGCGTAGGCCAGCGTTACGCGTTGAACCACCTCGTACTCTTCATTG 1365
Query 1420 CTATGTTCTCATCGTTGTTTGATTTCAAGAGACTTCAATCGGACGGTTGCGATGACATCA 1479
| |||||||| ||| || | |||||||||||||||| |||||||||||| ||||| |||
Sbjct 1366 CAATGTTCTCGTCGCTGCTGGATTTCAAGAGACTTCGATCGGACGGTTGTGATGATATCG 1425
Query 1480 TATACTGTCCC-ACGATATCGCCAAAGGACGGGTGCACGGTGTTCTTGTCTAAGCGCATC 1538
| ||||| ||| |||||||||||||||||||| || |||||||||||||| | |||| ||
Sbjct 1426 TGTACTG-CCCTACGATATCGCCAAAGGACGGTTGTACGGTGTTCTTGTCCAGGCGCGTC 1484
Query 1539 GTAACGTATCCGAACCTCT 1557
| || |||||| |||||||
Sbjct 1485 GCAAAGTATCCTAACCTCT 1503
> Ahg933351 jgi|Araly1|933351|scaffold_401339.1
Length=1530
Score = 1077 bits (583), Expect = 0.0
Identities = 1215/1513 (80%), Gaps = 71/1513 (5%)
Strand=Plus/Plus
Query 49 Gaaaa-aaa-aG-GATGGTTTTCTCAGTTTCCATTTTTGCCTCTCTCGCTCCGTACTTAG 105
||||| ||| || ||||||| |||| ||||| | ||||||||||| || ||||||||||
Sbjct 7 GAAAACAAAGAGTAATGGTTTCCTCAATTTCCCTATTTGCCTCTCTTGCACCGTACTTAG 66
Query 106 TCTCTGCGTTACTACTCTTCTTTCT-CATCGAGCAGCTCTCTTACCTCGTCAAGAAACGT 164
|||| || ||||| || ||| |||| | ||||||| ||||||||||| ||||||||||||
Sbjct 67 TCTCAGCATTACTTCTATTCCTTCTGC-TCGAGCAACTCTCTTACCTTGTCAAGAAACGT 125
Query 165 AACCTCCCTGGTCCTCTCTTTGTCCCTCCGATCATCGGAAACGCCATTTCACTCGTCCGT 224
|||||||||||||||||||| |||| ||||||||| ||||||| || |||| ||||||
Sbjct 126 AACCTCCCTGGTCCTCTCTTCGTCCTTCCGATCATTGGAAACGTTGTTGCACTTGTCCGT 185
Query 225 GATCCTACTTCCTTCTGGTTCAAGCAATCCGAC-ACGGCAGG-CACTTCCCCTGGCCTCG 282
|| || |||||||||||| ||||||||||| | | ||| || ||||||| |||||||
Sbjct 186 GACCCAACTTCCTTCTGGGACAAGCAATCCG-CGATGGC-GGACACTTCCGTTGGCCTCT 243
Query 283 CTG-CTAACTACCTCATCGGCAAATTCATCATCTACATCAGAGACACAGAGCTTTCTCA- 340
| | | |||||||| || || ||||||||||| ||||| | |||| ||||||| || ||
Sbjct 244 CCGTC-AACTACCTTATTGGAAAATTCATCATATACATTAAAGACGCAGAGCTCTC-CAA 301
Query 341 TCAAATATTCTCCAACGTTCGTCTTGAAGCTTTTCACCCTCTAGGACATCCTTTTGGCAA 400
| |||| ||||||||| |||||| ||| ||||| || | | | |||||||| || | ||
Sbjct 302 TAAAATCTTCTCCAACATTCGTCCTGATGCTTTCCAACTTGTTGGACATCCATTCAGAAA 361
Query 401 ACAA-CTATTCGGTGATCATAGCCTAATCTACT-TGTTTGGTGAGGATCACAAAACTGTT 458
| || || ||||||||||| ||||| |||| | ||||||| |||||||||||| | |||
Sbjct 362 A-AAGCTCTTCGGTGATCACAGCCTTATCTT-TATGTTTGGCGAGGATCACAAATCCGTT 419
Query 459 CGCCGTCACCTTGCTCCTAACTTCACCCC-CAAGGCACTCTCCACTTACTCTGATCTCCA 517
|| ||||| | |||||||||||||||| ||| ||||||| | || ||| ||| |
Sbjct 420 CGTCGTCAAGTCGCTCCTAACTTCACCCGACAAC-CACTCTCTGCCTATTCTTCCCTCGA 478
Query 518 ACAAATAGTTATGCTCCGTCATCTACGACAGTGGGAGGAAAGTTTCTCCGGCGGAACTAA 577
||||||||||| ||||||||| |||| |||||||||||| |||| ||| | ||| ||
Sbjct 479 GCAAATAGTTATCCTCCGTCATTTACGGCAGTGGGAGGAATGTTTTTCCAGTGGATCTCG 538
Query 578 GCCGGTTTCTATGCGAGACCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACGGTTTT 637
||||||||| ||| || | || |||||||||| || || |||||||| || || |||||
Sbjct 539 GCCGGTTTCGATGAGACAACTAATCCGTGAACTAAACCTCGAGACTTCCCAGACCGTTTT 598
Query 638 CGTTGGACCCTACCTTGACAAGGAAG-CTAGGAACACGTTCTGTACTGATTACAATCTGT 696
|||||||| ||||| || |||||| | || |||||| || |||||||||||||| |||
Sbjct 599 TGTTGGACCATACCTCAACGAGGAAGTCAAG-AACACGATCCGTACTGATTACAATGTGT 657
Query 697 TCAATCTCGGATCTATGGCGCTCCCGATCAACCTGCCC-GGCTTTGCGTTCAACAAGGCT 755
|||||| |||| | ||||| ||||||||| |||| ||| ||||| ||||| | |||||
Sbjct 658 TCAATCCCGGAACAATGGCCCTCCCGATCGACCT-CCCTGGCTTCACGTTCGGCGAGGCT 716
Query 756 CGCCGGGCGGTAAT-GA-ACCTGGAGAAGACGCTCTCCGTCTGTGCGG-G-AAAATCCAA 811
|| ||||||||| | || || | | ||| || | | || | |||| | |||||| ||
Sbjct 717 CGTCGGGCGGTA-TCGAGAC-TAGTGAATACAATGGCTGT-T-TGCGTAGTAAAATCAAA 772
Query 812 A--AAGAGGATGGCTACAGGAGAGGAGCCAACATG-CTTAATCGATTTTTGGATGCATGC 868
| || || |||||| |||||||| | |||||||| || | ||||||| |||| |||| |
Sbjct 773 AGCAA-AG-ATGGCTGCAGGAGAGAATCCAACATGTCT-AGTCGATTTCTGGACGCATTC 829
Query 869 -ATTCGTCACGGAGATAGAATCCGGTAATCCACCGCCGCTTCACTCCGAAGACGAAGCCA 927
|| | | | ||||| ||||||| |||||||| | |||||| ||||||||| |
Sbjct 830 GAT-CAT-A-GGAGA--GAATCCG-----CCACCGCC--T-CACTCCAAAGACGAAGAGA 876
Query 928 TCGGCGGTTTGCTC-TTCGATTTTCTCTTTGCCGCACAAGACGCGTCGACGTCATCACTC 986
|| | || ||||| || |||||||| |||||| |||| |||||||| || |||||||||
Sbjct 877 TCAGTTGTGTGCTCGTT-GATTTTCTGTTTGCCTCACAGGACGCGTCTACATCATCACTC 935
Query 987 CTTTGGGCGGTGACGTTTCTAGAATCTCATCC-GAAAGTGCTGAGCAA-AGTGAGGGAGG 1044
|| ||||| ||| | | || || || | || ||| ||||| || || ||| |||||||
Sbjct 936 CTCTGGGCAGTGGTGCTACTTGAGTCGGAGCCAGAA-GTGCTAAG-AAGAGTAAGGGAGG 993
Query 1045 AAGTGGCCAAGA-TTTGGTCACCTCAGTCTGGCCA-TCTGATCACGGCCGATCAGCTCGC 1102
|||| || |||| ||||||| ||| |||| | | | |||| || || |||||||||||
Sbjct 994 AAGTCGC-AAGAGTTTGGTCGCCTGAGTCCAACGAGT-TGATAACAGCTGATCAGCTCGC 1051
Query 1103 GGAGATGAAGTATACTCGCG-CTGTGGCACGTGAGGTGGTGAGATATCGACCACC-GGCA 1160
|||||||||||| ||||| | ||||||| |||||||| | ||||| |||||||| || |
Sbjct 1052 GGAGATGAAGTACACTCG-GTCTGTGGCGCGTGAGGTCCTTAGATACCGACCACCAGG-A 1109
Query 1161 ACTATGGTCCCACACATTGCTACTAATGATTTCCCTCTTACAGAATCGTACACTATCCCA 1220
| |||||||||||| ||||| || ||| |||| ||| || ||||||||||| ||||||
Sbjct 1110 ATTATGGTCCCACATGTTGCTGTTAGTGACTTCCATCTCACGGAATCGTACACAATCCCA 1169
Query 1221 AAAGGTACAATAGTGTTTCCCTCGGTTTTCGACGCCTCGTTTCAAGGGTTTACTGAACC- 1279
||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1170 AAAGGTACAATTGTCTTTCCTTCCCTTTTCGACGCCTCGTTTCAAGGGTTTACTGAACCA 1229
Query 1280 GAACCGGTTCGATCCGGACCGGTTTAGTGAGACAAGGCAAGAGGATCAAGTGTTCAAACG 1339
|| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1230 GA-CCGGTTCGATCCTGACCGGTTTAGCGAGACAAGGCAAGAGGATCAGGTGTTCAAACG 1288
Query 1340 AAACTACCTAGCTTTTGGA-TGGGGTGCACACCAATGCGTAGGCCAGCGTTACGC-ATTG 1397
|| | |||| |||||||| | || | | ||||| ||||||||||| |||||||| || |
Sbjct 1289 CAATTTCCTAACTTTTGGAATTGGCT-CGCACCAGTGCGTAGGCCAACGTTACGCGAT-G 1346
Query 1398 AACCACCTCGTGCTCTTCATCGCTATGTTCTCATCGTTGTTTGATTTCAAGAGACTTCAA 1457
|||||||||||||||||||| || |||||||| || |||||||||||||||| | | |
Sbjct 1347 AACCACCTCGTGCTCTTCATTGCCATGTTCTCCTCCATGTTTGATTTCAAGAGGGTCCGA 1406
Query 1458 TCGGACGGTTGCGATGACATCATATACTGTCCCACGATATCGCCAAAGGACGGGTGCACG 1517
|| || ||||| ||||| || | | || ||||| || ||||| ||||||||||||||
Sbjct 1407 TCAGATGGTTGTGATGAGATTGTGCATTGCCCCACCATGTCGCCTAAGGACGGGTGCACA 1466
Query 1518 GTGTTCTTGTCTA 1530
|||||||||||||
Sbjct 1467 GTGTTCTTGTCTA 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5