BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34500.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934048 jgi|Araly1|934048|scaffold_402036.1 2143 0.0
Ahg934047 jgi|Araly1|934047|scaffold_402035.1 1325 0.0
Ahg933351 jgi|Araly1|933351|scaffold_401339.1 1297 0.0
> Ahg934048 jgi|Araly1|934048|scaffold_402036.1
Length=1534
Score = 2143 bits (1160), Expect = 0.0
Identities = 1419/1543 (92%), Gaps = 22/1543 (1%)
Strand=Plus/Plus
Query 189 AAGCTAGAAACAAAGAAACATGGTTTTCTCT-GTTTCTATATTTGCCTCTCTTGCACCAT 247
||| || ||||||||||||||||||||| | | ||||||| |||||||||| |||||||
Sbjct 3 AAG-TAAAAACAAAGAAACATGGTTTTC-ATAGCTTCTATAATTGCCTCTCTCGCACCAT 60
Query 248 ACTTAATCTCAGCATTTCTTCTTTTCCTTCTCG-TCGAGCAACTCTCTTACCTTTTCAAG 306
|||||||||||||||| ||||| |||||||| | |||||||| |||||||||| ||||||
Sbjct 61 ACTTAATCTCAGCATTACTTCTCTTCCTTCT-GCTCGAGCAAGTCTCTTACCTCTTCAAG 119
Query 307 AAACGAAACATCCCTGGCCCT-TTCTTCGTCCCTCCAATCATCGGAAACGCCGTTGCACT 365
||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 120 AAACGAAACATCCCTGGCCCTCTT-TTCGTCCCTCCTATTATCGGCAACGCCGTTGCACT 178
Query 366 CGTTCGTGACCCCACTTCCTTCTGGGACAAGCAATCCTCCACGGC-GAACATCTCAGGCC 424
||| ||||| ||||||||||||||||||||||||||| || |||| | || |||||||
Sbjct 179 CGTCCGTGATCCCACTTCCTTCTGGGACAAGCAATCCGCCTCGGCTG-GCAAATCAGGCC 237
Query 425 TCTCCGCCAACTACCTCATCGGAAAATTCATCGTCTATATCAGAGACACTGAGCTTTCCC 484
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 238 TCTCCGCCAACTACCTCATAGGAAAATTCATTGTCTATATCAGAGACACAGAGCTTTCCC 297
Query 485 ATCAAATCTTCTCAAACGTTCGTCCCGATGCCTTCCACCTTATCGGACATCCCTTTGGTA 544
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 298 ATCAAATCTTCTCAAACGTTCGTCCCGATGCCTTCCACCTTATAGGCCATCCCTTTGGTA 357
Query 545 AGAAGCTCTTCGGTGACCACAACCTTATATACATGTTCGGCGAGGATCACAAATCCGTTC 604
||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||||
Sbjct 358 AGAAGCTCTTCGGTGACCACAACCTCATTTACATGTTCGGTGAAGATCACAAATCCGTTC 417
Query 605 GCCGTCAGCTAGCACCTAACTTCACTCCCAAGGCACTGTCCACTTACTCTGCCCTCCAGC 664
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 418 GCCGCCAGCTAGCTCCTAACTTCACCCCCAAGGCACTGTCCACCTACTCTGCCCTCCAGC 477
Query 665 AATTAGTTATTCTCCGTCATCTACGGCAG-TGGGAGGGGAGTACCTCCGGCGGATCTCGT 723
||||||||| |||||||||||||||| | ||||||| |||||||||||| |||||||||
Sbjct 478 GATTAGTTATCCTCCGTCATCTACGGC-GATGGGAGGAGAGTACCTCCGGTGGATCTCGT 536
Query 724 CCAGTGTCACTGCGACAGCTTGTCCGTGAACTCAACCTAGAAACTTCGCAGACGGTTTTT 783
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 537 CCAGTGTCACTGCGACACCTTGTCCGTGAACTCAACCTCGAAACTTCCCAGACGGTTTTC 596
Query 784 GTTGGACCCTACCTTGACAAGGAAGCCAAGAACAGGTTCCGTACTGATTATAATTTGTTC 843
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 597 GTTGGACCTTACCTTGACAAGGAAGCCAAGAACAGGTTCCGTACTGATTACAATCTGTTC 656
Query 844 AATCTCGGATCCATGGCTCTCCCCATAGACCTCCCTGGCTT-TGCGTTCGGCGAGGCTCG 902
||||||||||||||||| || ||||| |||||||||||||| | ||||||||||||||||
Sbjct 657 AATCTCGGATCCATGGCGCTTCCCATCGACCTCCCTGGCTTCT-CGTTCGGCGAGGCTCG 715
Query 903 CAGGGCTGTAAAGAGGCTAGGGGAGACGCTCGGCATTTGCGCGGGAAAATCCAAAGCGAG 962
| |||| ||| |||||||| ||||||||||| ||| ||||| |||||||||||||| ||
Sbjct 716 CCGGGCAGTAGCGAGGCTAGCGGAGACGCTCGCCATCTGCGCAGGAAAATCCAAAGCAAG 775
Query 963 GATGGCAGCAGGAGAAGAACCAGCATGCCTAATCGATTTCTGGATGCAGGCGATCGTCGC 1022
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 776 GATGGCAGGAGGAGAAGAACCAACATGCCTAATCGATTTCTGGATGCAGGCGATAGCCAC 835
Query 1023 GGAGAATCCGCAGCCACCGCACTCGGGAGACGAAGAGATCGGTGGTTTGCTCTTCGATTT 1082
||||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct 836 GGAGAATCCGCCGCCACCACATTCCGGAGACGAAGAGATCGGCGGTTTGCTCTTCGATTT 895
Query 1083 TCTCTTTGCCGCTCAAGACGCGTCCACGTCATCACTCCTCTGGGCCGTGACGCTT-CTTG 1141
|||||||||||| || |||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 896 TCTCTTTGCCGCGCAGGACGCGTCCACGTCATCACTGCTCTGGGCCGTGACG-TTGCTTG 954
Query 1142 ATTCAGAGCCAGAGGTGCTGAACAGAGTAAGAGAAGAAGTAGCCAAGATCTGGTCACCTG 1201
| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 955 AATCAGAGCCAGAGGTGCTGAACAGAGTAAGAGAGGAAGTAGCCAAGATCTGGCCACCGG 1014
Query 1202 AGTCCAACGCCTTGATCACCGTTGATCAGCTCGCAGAGATGAAGTATACACGCTCCGTGG 1261
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1015 AGTCAAACGCCTTGATCACCGTTGATCAGCTCGCAGAGATGAAGTACACGCGCTCCGTAG 1074
Query 1262 CGCGTGAGGTCATTAGATACAGGCCTCCTGCAACTATGGTCCCACACGTCGCTGCTATAG 1321
||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1075 CGCGTGAGGTCGTGAGATACAGGCCTCCGGCAACTATGGTCCCACACGTCGCTGCTACAG 1134
Query 1322 ACTTCCCTCTCACGGAAACGTACACTATCCCAAAAGGTACAATTGTCTTTCCTTCGGTTT 1381
||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1135 ACTTCCCTCTCACGGAATCGTACACTATCCCCAAAGGTACAATAGTCTTTCCTTCGGTTT 1194
Query 1382 TCGACTCCTCGTTCCAAGGGTTTACTGAACCGGACCGGTTTGATCCTGACCGGTTTAGCG 1441
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1195 TCGACTCCTCGTTCCAAGGGTTTACCGAACCGGACCGGTTTGATCCTGACCGATTTAGCG 1254
Query 1442 AGACAAGACAAGAGGACCAGGTGTTCAAACGCAACTTCCTAGCTTTTGGATGGGGGCCTC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGACAAGACAAGAGGACCAGGTGTTCAAACGCAACTTCCTAGCTTTTGGATGGGGGCCTC 1314
Query 1502 ACCAATGCGTAGGCCAGCGTTACGCGTTGAACCACCTCGTACTCTTCATTGCAATGTTCT 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ACCAATGCGTAGGCCAGCGTTACGCGTTGAACCACCTCGTACTCTTCATTGCAATGTTCT 1374
Query 1562 CGTCGTTGTTGGATTTCAAGAGGCTTCGATCAGACGGTTGTGATGAGATCGTGTACTGCC 1621
||||| || ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1375 CGTCGCTGCTGGATTTCAAGAGACTTCGATCGGACGGTTGTGATGATATCGTGTACTGCC 1434
Query 1622 CTACTATATCGCCCAAGGATGGGTGCACCGTGTTCTTGTCTAGGCGCGTCGCAAAGTATC 1681
|||| |||||||| ||||| || || || ||||||||||| |||||||||||||||||||
Sbjct 1435 CTACGATATCGCCAAAGGACGGTTGTACGGTGTTCTTGTCCAGGCGCGTCGCAAAGTATC 1494
Query 1682 CCAACTT-TTCCTAAATT--TTTTG-GATTTTTCTTAAATTTA 1720
| ||| | ||| | |||| |||| |||| ||||||||||
Sbjct 1495 CTAACCTCTTCTTGAATTGATTTTTAGATT---CTTAAATTTA 1534
> Ahg934047 jgi|Araly1|934047|scaffold_402035.1
Length=1545
Score = 1325 bits (717), Expect = 0.0
Identities = 1262/1524 (83%), Gaps = 41/1524 (3%)
Strand=Plus/Plus
Query 194 AGAAACAAAGAAACATGGTTTTCTCTGTTTCTATATTTGCCTCTCTTGCACCATACTTAA 253
||||| ||| ||| |||| |||||| ||||| | |||||||||||| ||||||||||||
Sbjct 12 AGAAA-AAA-AAAAATGGCTTTCTCAGTTTCCAGATTTGCCTCTCTCGCACCATACTTAG 69
Query 254 TCTCAGCATTTCTTCTTTTCCTTCTCGTCGAGCAACTCTCTTACCTTTTCAAGAAACGAA 313
|||| || ||||| |||||||| |||||||| ||||||||||| |||||||||| |
Sbjct 70 TCTCTTTGTTACTTCTCTTCCTTCTAATCGAGCAAATCTCTTACCTTGTCAAGAAACGTA 129
Query 314 ACATCCCTGGCCCTTTCTTCGTCCCTCCAATCATCGGAAACGCCGTTGCACTCGTTCGTG 373
|| ||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 130 ACCTCCCTGGCCCTCTCTTTGTCCCTCCGATCATCGGAAACGCCGTTTCACTCGTTCGTG 189
Query 374 ACCCCACTTCCTTCTGGGACAAGCAATCCTCCACGGC--GAACATCTC-AGGCCTCTCCG 430
|||| |||||||||||| ||||||||||| | ||||| | || || | |||||||| |
Sbjct 190 ACCCAACTTCCTTCTGGTACAAGCAATCCGCAACGGCGGGCACTTCCCGTGGCCTCTCTG 249
Query 431 CCAACTACCTCATCGGAAAATTCATCGTCTATATCAGAGACACTGAGCTTTCCCATCAAA 490
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 250 CCAACTACCTCATCGGAAAATTCATCATCTACATCAGAGACACTGAGCTTTCCCATCAAA 309
Query 491 TCTTCTCAAACGTTCGTCCCGATGCCTTCCACCTTATCGGACATCCCTTTGGTAAG-AAG 549
||||||| ||||| ||| | |||| || |||| | |||||||||| ||||| || ||
Sbjct 310 TCTTCTCCAACGTGGGTCTCAATGCATTTCACCCTCTCGGACATCCTTTTGGCAAACAA- 368
Query 550 CTCTTCGGTGACCACAACCTTATATACATGTTCGGCGAGGATCACAAATCCGTTCGCCGT 609
|||||||| || || | ||| || ||| ||||||| |||||||||||| |||||||||||
Sbjct 369 CTCTTCGGCGATCATAGCCTAATCTACTTGTTCGGTGAGGATCACAAAACCGTTCGCCGT 428
Query 610 CAGCTAGCACCTAACTTCACTCCCAAGGCACTGTCCACTTACTCTGCCCTCCAGCAATTA 669
|| || || || |||||||| ||||||||||| ||||||||||||| || || ||| ||
Sbjct 429 CACCTTGCTCCCAACTTCACCCCCAAGGCACTCTCCACTTACTCTGATCTTCAACAAATA 488
Query 670 GTTAT-TCTCCGTCATCTACGGCAGTGGGAGGGGAGTACCTCCGGCGGATCTC-GTCCAG 727
||||| | ||||||||||||| |||||||||| ||| ||| |||||| || | || |
Sbjct 489 GTTATGT-TCCGTCATCTACGACAGTGGGAGGAAAGTTTCTCTGGCGGAACTAAG-CCGG 546
Query 728 TGTC-ACTGCGACAGCTTGTCCGTGAACTCAACCTAGAAACTTCGCAGACGGTTTTTGTT 786
| || | ||||| | ||||||||||||||||| || || ||||| || || ||||| |||
Sbjct 547 TTTCTA-TGCGAGATCTTGTCCGTGAACTCAATCTTGAGACTTCTCAAACTGTTTTCGTT 605
Query 787 GGACCCTACCTTGACAAGGAAGCCAAGAA-CAGGTTCCGTACTGATTATAATTTGTTCAA 845
||||||||||||||||| ||||| | ||| || ||||||||||||||| ||| |||||||
Sbjct 606 GGACCCTACCTTGACAAAGAAGCTA-GAAACACGTTCCGTACTGATTACAATCTGTTCAA 664
Query 846 TCTCGGATCCATGGCTCTCCCCAT-AGACCTCCCTGGCTTTGCGTTCGGCGAGGCTCGCA 904
| | || |||||||| ||||| || | |||| ||||||||||||||| || ||||||||
Sbjct 665 TGTTGGTTCCATGGCGCTCCCGATCA-ACCTACCTGGCTTTGCGTTCAGCAAGGCTCGCC 723
Query 905 GGGCTGTAAAGAGGCTAGGGGAGACGCTCGGCATTTGCGCGGGAAAATCCAAAGCGAGGA 964
|||| || | || || | |||||| ||| | | || || ||||||||||||| || ||
Sbjct 724 GGGCGGTGATGAACCTTGAGGAGACACTCTCCGTCTGTGCCGGAAAATCCAAAGAGAAGA 783
Query 965 TGGC-AGCAGGAGAAGAACCAGCATGCCTAATCGATTTCTGGATGCAGGCGATCGTCGCG 1023
|||| | |||| || || ||| |||||||||||||||||||||||| || |||||| ||
Sbjct 784 TGGCGA-CAGGGGAGGAGCCAAAATGCCTAATCGATTTCTGGATGCATGCAATCGTCACG 842
Query 1024 GAGA-A---TCCGC-A----GCCACCGC---ACTCGGGAGACGAAG-AGATCGGTGGTTT 1070
|||| | || | | |||||| | |||| | |||||||| | |||||||||||
Sbjct 843 GAGATAGAATCTGGTAATCCGCCACCACTTCACTCCGAAGACGAAGCA-ATCGGTGGTTT 901
Query 1071 GCTCTTCGATTTTCTCTTTGCCGCTCAAGACGCGTCCACGTCATCACTCCTCTGGGCCGT 1130
|||||| ||||||||||| || || ||||||||||| || ||||||||||| ||||| ||
Sbjct 902 GCTCTTTGATTTTCTCTTCGCTGCACAAGACGCGTCGACATCATCACTCCTTTGGGCGGT 961
Query 1131 GACGCTTCTTGATTC-AGAGCCAGAGGTGCTGAACAGAGTAAGAGAAGAAGTAGCCAAGA 1189
| || ||||||| || | | || || ||||| | || ||| || || ||||| |||||||
Sbjct 962 GGCGTTTCTTGAATCTA-ATCCGGAAGTGCTTAGCAAAGTGAGGGAGGAAGTGGCCAAGA 1020
Query 1190 TCTGGTCACCTGAGTCCAACGC-CTTGATCACCGTTGATCAGCTCGCAGAGATGAAGTAT 1248
| ||||| ||||||||| || ||| ||||| | ||||||||||| |||||||||||
Sbjct 1021 TTTGGTCGCCTGAGTCCGGCGAGCTT-ATCACGGCCGATCAGCTCGCGGAGATGAAGTAC 1079
Query 1249 ACACGCTCCGTGGCGCGTGAGGTCATTAGATACAGGCCTCCTGCAACTATGGTCCCACAC 1308
|| ||| || || || |||||| | |||||| | || || ||||| |||||||| |||
Sbjct 1080 ACGCGCGCCACAGCTCGCGAGGTCGTGAGATACCGACCACCGGCAACAATGGTCCCGCAC 1139
Query 1309 GTCGCTGCTA-TAGACTTCCCTCTCACGGAAACGTACACTATCCCAAAAGGTACAATTGT 1367
| ||| ||| | || ||||| ||||||||| ||||||| ||||||||||||||||| ||
Sbjct 1140 ATTGCTACTAAT-GATTTCCCGCTCACGGAATCGTACACAATCCCAAAAGGTACAATCGT 1198
Query 1368 CTTTCCTTCGGTTTTCGACTCCTCGTTCCAAGGGTTTACTGAACCGGACCGGTTTGATCC 1427
||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 1199 TTTTCCCTCGGTTTTCGACTCATCGTTCCAAGGGTTTACTGAACCGAACCGGTTCGATCC 1258
Query 1428 TGACCGGTTTAGCGAGACAAGACAAGAGGACCAGGTGTTCAAACGCAACTTCCTAGCTTT 1487
|||||||||||||||||||| |||||||| || || ||||||||||||| |||||||||
Sbjct 1259 GGACCGGTTTAGCGAGACAAGGCAAGAGGATCAAGTATTCAAACGCAACTACCTAGCTTT 1318
Query 1488 TGGATGGGG-GCCTCACCAATGCGTAGGCCAGCGTTACGCGTTGAACCACCTCGTACTCT 1546
||||||||| || ||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1319 TGGATGGGGTGCG-CACCAGTGCGTAGGCCAGCGTTACGCGCTGAACCACCTCGTTCTCT 1377
Query 1547 TCATTGCAATGTTCTCGTCGTTGTTGGATTTCAAGAGGCTTCGATCAGACGGTTGTGATG 1606
|||| ||||||||||| || ||||| |||||||||||||||| | | ||||| || ||||
Sbjct 1378 TCATCGCAATGTTCTCCTCTTTGTTTGATTTCAAGAGGCTTCAAACTGACGGCTGCGATG 1437
Query 1607 AGATCGTGTACTGCCCTACTATATCGCCCAAGGATGGGTGCACCGTGTTCTTGTCTAGGC 1666
| ||| | |||||||| || |||||||| ||||| |||||||| || |||||||||| ||
Sbjct 1438 ACATCATATACTGCCCCACGATATCGCCGAAGGACGGGTGCACGGTCTTCTTGTCTAAGC 1497
Query 1667 GCGTCGCAAAGTATCCCAACTTTT 1690
|||||| || ||||| ||| |||
Sbjct 1498 GCGTCGTAACTTATCCGAACCTTT 1521
> Ahg933351 jgi|Araly1|933351|scaffold_401339.1
Length=1530
Score = 1297 bits (702), Expect = 0.0
Identities = 1242/1502 (83%), Gaps = 40/1502 (3%)
Strand=Plus/Plus
Query 193 TAG-AAACAAAGA-AACATGGTTTTCTCTGTTTCTATATTTGCCTCTCTTGCACCATACT 250
||| ||||||||| | ||||||| ||| |||| ||||||||||||||||||| ||||
Sbjct 5 TAGAAAACAAAGAGTA-ATGGTTTCCTCAATTTCCCTATTTGCCTCTCTTGCACCGTACT 63
Query 251 TAATCTCAGCATTTCTTCTTTTCCTTCTCG-TCGAGCAACTCTCTTACCTTTTCAAGAAA 309
|| |||||||||| ||||| |||||||| | |||||||||||||||||||| ||||||||
Sbjct 64 TAGTCTCAGCATTACTTCTATTCCTTCT-GCTCGAGCAACTCTCTTACCTTGTCAAGAAA 122
Query 310 CGAAACATCCCTGGCCCTTTCTTCGTCCCTCCAATCATCGGAAACGCCGTTGCACTCGTT 369
|| ||| ||||||| ||| ||||||||| ||| ||||| ||||||| |||||||| ||
Sbjct 123 CGTAACCTCCCTGGTCCTCTCTTCGTCCTTCCGATCATTGGAAACGTTGTTGCACTTGTC 182
Query 370 CGTGACCCCACTTCCTTCTGGGACAAGCAATCCTCCACGGC-GA-ACAT-C-TCAGGCCT 425
|||||||| |||||||||||||||||||||||| | | ||| || || | | | |||||
Sbjct 183 CGTGACCCAACTTCCTTCTGGGACAAGCAATCCGCGATGGCGGACACTTCCGT-TGGCCT 241
Query 426 CTCCGCCAACTACCTCATCGGAAAATTCATCGTCTATATCAGAGACACTGAGCTTTCCCA 485
||||| ||||||||| || |||||||||||| | || || | |||| | ||||| ||| |
Sbjct 242 CTCCGTCAACTACCTTATTGGAAAATTCATCATATACATTAAAGACGCAGAGCTCTCCAA 301
Query 486 TCAAATCTTCTCAAACGTTCGTCCCGATGCCTTCCACCTTATCGGACATCCCTTTGGTAA 545
| |||||||||| ||| ||||||| ||||| ||||| ||| | |||||||| || | ||
Sbjct 302 TAAAATCTTCTCCAACATTCGTCCTGATGCTTTCCAACTTGTTGGACATCCATTCAGAAA 361
Query 546 GAAGCTCTTCGGTGACCACAACCTTATATACATGTTCGGCGAGGATCACAAATCCGTTCG 605
|||||||||||||| |||| |||||| | ||||| |||||||||||||||||||||||
Sbjct 362 AAAGCTCTTCGGTGATCACAGCCTTATCTTTATGTTTGGCGAGGATCACAAATCCGTTCG 421
Query 606 CCGTC-AGCTAGCACCTAACTTCACTCC--CAAGGCACTGTCCACTTACTCTGCCCTCCA 662
|||| || | || ||||||||||| || ||| |||| || | || ||| ||||| |
Sbjct 422 TCGTCAAG-TCGCTCCTAACTTCAC-CCGACAA-CCACTCTCTGCCTATTCTTCCCTCGA 478
Query 663 GCAATTAGTTATTCTCCGTCATCTACGGCAGTGGGAGGGGA-GTACCTCCGGCGGATCTC 721
|||| ||||||| ||||||||| ||||||||||||| || | || ||| | |||||||
Sbjct 479 GCAAATAGTTATCCTCCGTCATTTACGGCAGTGGGA-GGAATGTTTTTCCAGTGGATCTC 537
Query 722 GTCCAGTGTC-ACTGCGACAGCTTGTCCGTGAACTCAACCTAGAAACTTCGCAGACGGTT 780
| || || || | || |||| || |||||||||| ||||| || ||||| ||||| |||
Sbjct 538 GGCCGGTTTCGA-TGAGACAACTAATCCGTGAACTAAACCTCGAGACTTCCCAGACCGTT 596
Query 781 TTTGTTGGACCCTACCTTGACAAGGAAGCCAAGAACAGGTTCCGTACTGATTATAATTTG 840
||||||||||| ||||| || |||||| |||||||| | ||||||||||||| ||| ||
Sbjct 597 TTTGTTGGACCATACCTCAACGAGGAAGTCAAGAACACGATCCGTACTGATTACAATGTG 656
Query 841 TTCAATCTCGGATCCATGGCTCTCCCCATAGACCTCCCTGGCTTTGCGTTCGGCGAGGCT 900
||||||| |||| | ||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct 657 TTCAATCCCGGAACAATGGCCCTCCCGATCGACCTCCCTGGCTTCACGTTCGGCGAGGCT 716
Query 901 CG-CAGGGCTGTAAAGAGGCTAGGGGAGACGCTCGGC-ATTTGCGCGGGAAAATCCAAAG 958
|| | |||| ||| ||| |||| | | || | ||| |||||| | |||||| ||||
Sbjct 717 CGTC-GGGCGGTATCGAGACTAGTGAATACAAT-GGCTGTTTGCGTAGTAAAATCAAAAG 774
Query 959 CGAGGATGGCAGCAGGAGAAGAA-CCAGCATGCCTAATCGATTTCTGGATGCAGGCGATC 1017
| | |||||| ||||||| |||| ||| |||| ||| |||||||||||| ||| |||||
Sbjct 775 CAAAGATGGCTGCAGGAG-AGAATCCAACATGTCTAGTCGATTTCTGGACGCATTCGATC 833
Query 1018 GTCGCG-GAGAATCCG-CAGCCACCGCACTCGGGAGACGAAGAGATCGGTGGTTTGCTC- 1074
| | | ||||||||| || || || ||||| ||||||||||||| || || |||||
Sbjct 834 ATAG-GAGAGAATCCGCCA-CCGCCTCACTCCAAAGACGAAGAGATCAGTTGTGTGCTCG 891
Query 1075 TTCGATTTTCTCTTTGCCGCTCAAGACGCGTCCACGTCATCACTCCTCTGGGCCGTGACG 1134
|| |||||||| |||||| | || |||||||| || ||||||||||||||||| ||| |
Sbjct 892 TT-GATTTTCTGTTTGCCTCACAGGACGCGTCTACATCATCACTCCTCTGGGCAGTGGTG 950
Query 1135 CTTCTTGATTCAGAGCCAGAGGTGCTGAA-CAGAGTAAGAGAAGAAGTAGCCAAGA-TCT 1192
|| ||||| || |||||||| ||||| || |||||||| || ||||| | ||||| | |
Sbjct 951 CTACTTGAGTCGGAGCCAGAAGTGCT-AAGAAGAGTAAGGGAGGAAGTCG-CAAGAGTTT 1008
Query 1193 GGTCACCTGAGTCCAACGCCTTGATCACCGTTGATCAGCTCGCAGAGATGAAGTATACAC 1252
|||| ||||||||||||| ||||| || | |||||||||||| ||||||||||| || |
Sbjct 1009 GGTCGCCTGAGTCCAACGAGTTGATAACAGCTGATCAGCTCGCGGAGATGAAGTACACTC 1068
Query 1253 GCTCCGTGGCGCGTGAGGTCATTAGATACAGGCCTCCTGCAACTATGGTCCCACACGTCG 1312
| || ||||||||||||||| |||||||| | || || | || |||||||||||| || |
Sbjct 1069 GGTCTGTGGCGCGTGAGGTCCTTAGATACCGACCACCAGGAATTATGGTCCCACATGTTG 1128
Query 1313 CTGCTA-TAGACTTCCCTCTCACGGAAACGTACACTATCCCAAAAGGTACAATTGTCTTT 1371
||| || | ||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1129 CTGTTAGT-GACTTCCATCTCACGGAATCGTACACAATCCCAAAAGGTACAATTGTCTTT 1187
Query 1372 CCTTCGGTTTTCGACTCCTCGTTCCAAGGGTTTACTGAACCGGACCGGTTTGATCCTGAC 1431
||||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1188 CCTTCCCTTTTCGACGCCTCGTTTCAAGGGTTTACTGAACCAGACCGGTTCGATCCTGAC 1247
Query 1432 CGGTTTAGCGAGACAAGACAAGAGGACCAGGTGTTCAAACGCAACTTCCTAGCTTTTGGA 1491
||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1248 CGGTTTAGCGAGACAAGGCAAGAGGATCAGGTGTTCAAACGCAATTTCCTAACTTTTGGA 1307
Query 1492 -TGGGGGCCTCACCAATGCGTAGGCCAGCGTTACGCGTTGAACCACCTCGTACTCTTCAT 1550
| || | ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1308 ATTGGCTCG-CACCAGTGCGTAGGCCAACGTTACGCGATGAACCACCTCGTGCTCTTCAT 1366
Query 1551 TGCAATGTTCTCGTCGTTGTTGGATTTCAAGAGGCTTCGATCAGACGGTTGTGATGAGAT 1610
||| |||||||| || |||| |||||||||||| | |||||||| ||||||||||||||
Sbjct 1367 TGCCATGTTCTCCTCCATGTTTGATTTCAAGAGGGTCCGATCAGATGGTTGTGATGAGAT 1426
Query 1611 CGTGTACTGCCCTACTATATCGCCCAAGGATGGGTGCACCGTGTTCTTGTCTAGGCGCGT 1670
||| | ||||| || || ||||| ||||| |||||||| |||||||||||||| || ||
Sbjct 1427 TGTGCATTGCCCCACCATGTCGCCTAAGGACGGGTGCACAGTGTTCTTGTCTAGCCGTGT 1486
Query 1671 CG 1672
||
Sbjct 1487 CG 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5