BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34510.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934049 jgi|Araly1|934049|scaffold_402037.1 1851 0.0
Ahg912808 jgi|Araly1|912808|Al_scaffold_0001_3062 809 0.0
> Ahg934049 jgi|Araly1|934049|scaffold_402037.1
Length=1244
Score = 1851 bits (1002), Expect = 0.0
Identities = 1166/1246 (94%), Gaps = 7/1246 (1%)
Strand=Plus/Plus
Query 129 TTCACAGAGAAAGAGAG--AGATGATGCTTTACAGCAACAATAGTTGGAGATCGAATTCC 186
||||||||||||||||| ||||| ||||||||| | ||| || |||||||| | ||||
Sbjct 1 TTCACAGAGAAAGAGAGAAAGATGGTGCTTTACAACTACAGTACTTGGAGATTGGTTTCC 60
Query 187 ATTTTAATACTTCTACTTGGTCTCTCCATTGTGGCCGCCGCAGACTCCGCCGGCAAAACT 246
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 61 ATTTTAATACTTCTACTTGGTCCCTCCATCGTCGCCGCCGCAGACTCCGCCGGCAAAACT 120
Query 247 TCACCGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGACACCGCCGTCAAACGGC 306
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 TTACCGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGACTCCACCGTCAAACGGC 180
Query 307 TTCCCTGATGACGCAATCATCGAGGACACCTCCGAGATCCCGAGCTGGCGATCCGATGGT 366
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 181 TTCCCTGATGACGCAATCATCGAGGAGTCCTCCGAGATACCGAGCTGGCGATCCGATGGC 240
Query 367 ACGGTGGAGCTAATCAAGTCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCTGAG 426
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ACGGTGGAGCTAATCAAATCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCCGAG 300
Query 427 GGCCGTCACGCTGTTAGATTAGGAAACGATGCAGAGATCAGCCAAGAACTTACGGTGGAG 486
|| |||||||| || |||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 301 GGTCGTCACGCCGTCAGATTAGGAAACGATGCAGAAATCAGCCAAGAACTTCCCGTAGAG 360
Query 487 AAAGGCTCTATCTACTCCGTCACGTTCAGTGCAGCCCGCACATGTGCACAACTCGAGTCG 546
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 361 AAAGGCTCTATCTACTCTGTCACGTTCAGTGCCGCCCGCACATGTGCACAGCTCGAGTCG 420
Query 547 CTGAATGTTTCGGTAGCTTCTTCTGATGAACCTATCGCATCGCAAACCATTGACTTGCAA 606
|||||||| || || ||||| | ||||||| || ||||| || |||||||||||||||
Sbjct 421 CTGAATGTGTCAGTGGCTTC--C-AATGAACCCATAGCATCACAGACCATTGACTTGCAA 477
Query 607 ACGGTGTACAGCGTTCAAGGATGGGATCCATATGCATGGGCGTTTGAAGCGGTTGTGGAT 666
||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 478 ACGGTCTACAGCGTTCAAGGGTGGGATCCATATGCATGGGCGTTTGAAGCAGTGGTTGAT 537
Query 667 CGCGTCCGGTTGGTTTTTAAGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATC 726
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGCGTCCGGTTGGTTTTTAGGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATC 597
Query 727 ATTGACGACATTGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTG 786
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATTGACGACATCGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTG 657
Query 787 ATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTTAGGAACACTACCTTAGGTGTTCTG 846
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 658 ATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTCAGGAACACGACATTAGGTGTTCTT 717
Query 847 CTTCCAACAAACCTCGATGAAGAAATATCGTCTCTTCCTGGATGGACCGTCGAATCGAAC 906
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 718 CTTCCGACAAACCTCGACGAAGAAATATCGTCTCTTCCCGGATGGACCGTCGAATCAAAC 777
Query 907 CGAGCAGTACGGTTTATTGACTCAGACCATTTCTCGGTCCCCGAGGGGAAGCGAGCTTTG 966
||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 778 CGAGCGGTCCGGTTTATTGACTCAGACCATTTCTCGGTCCCTGAGGGAAAGCGAGCTTTG 837
Query 967 GAACTTTTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGACAAAGGCGAACATT 1026
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGCTTCTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGACAAAGGCGAACATT 897
Query 1027 CCGTACAAGATGTCTTTCTCTTTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCT 1086
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 898 CCGTACAAGCTGTCTTTCTCATTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCC 957
Query 1087 GTAATGGCTTTTGCTGGAGATCAAGCACAGAACTTTCATTATATGGCGCAAGCAAACTCG 1146
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 958 GTAATGGCTTTTGCCGGAGATCAAGCACAGAACTTTCATTATATGGCGCAGGCGAACTCT 1017
Query 1147 AGTTTCGAAAGATCGGAGTTGAACTTCACTGCGAAAGCTGAACGTACGAGGATCGCCTTC 1206
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1018 AGTTTCGAAAGATCGGAGTTGAACTTCACGGCGAAAGCTGAACGAACGAGGATCGCCTTC 1077
Query 1207 TACAGCATTTATTACAATACGAGGACGGACGATATGACTTCATTGTGTGGACCTGTGATT 1266
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1078 TACAGCATTTATTACAATACGAGGACGGACGACATGAGTTCATTGTGTGGACCTGTGATT 1137
Query 1267 GATGACGTTAAGGTTTGGTTCTCCGGGTCTAGTAGAATTGGATTTAGTTTTCC-GCTTTT 1325
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 1138 GATGACGTTAAGGTTTGGTTCTCCGGGTCTAGTAGAATTGGATTTGGTTTTCCAG-TTTT 1196
Query 1326 TATTCTTCTTTCTTTGGTTTTCATCTAGATTGTTCCGGTTCAGAAA 1371
|||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1197 TATTCTTCTTTCATTGGTTTTCATCTAGATTGTTCCTGTTCAGAAA 1242
> Ahg912808 jgi|Araly1|912808|Al_scaffold_0001_3062
Length=1122
Score = 809 bits (438), Expect = 0.0
Identities = 864/1065 (81%), Gaps = 48/1065 (5%)
Strand=Plus/Plus
Query 274 AACGGCGACTTTGAGACACCGCCGTCAAACGGCTTCCCTGATGACGCAATCATCGA-GGA 332
||||||||||| || ||| | |||||||| |||||||| || |||| | | | ||| |||
Sbjct 19 AACGGCGACTTCGAAACATCACCGTCAAATGGCTTCCCAGACGACGGAGTAACCGACGGA 78
Query 333 CACCTCCGAGATCCCGAGCTGGCGATCCGATGGTACGGTGGAGCTAATCAAGTCCGGTCA 392
| | ||||| ||||| |||||| |||| | |||||||||||||||||||| ||||||||
Sbjct 79 C-CATCCGATATCCCAAGCTGGAAATCCAACGGTACGGTGGAGCTAATCAACTCCGGTCA 137
Query 393 AAAACAAGGCGGGATGATCTTGATCGTGCCTGAGGGCCGTCACGCTGTTAGATTAGGAAA 452
|||||||||||| |||||| | || || || | ||||||||||| || ||||||| ||
Sbjct 138 AAAACAAGGCGGAATGATCCTCATTGTCCCACAAGGCCGTCACGCCGTCCGATTAGGCAA 197
Query 453 CGATGCAGAGATCAGCCAAGAACTTACGGTGGAGAAAGGCTCTATCTACTCCGTCACGTT 512
|| ||||||||||||||||| || ||||| |||||||| | | ||||||| ||||||||
Sbjct 198 TGACGCAGAGATCAGCCAAGATCTAACGGTTGAGAAAGGTTTTGTCTACTCAGTCACGTT 257
Query 513 CAGTGCAGCCCGCACATGTGCACAACTCGAGTCGCTGAATGTTTCGGTAGCTTCTTCTG- 571
||||||||| ||||| || || |||||||| ||| | || || ||||| || || | ||
Sbjct 258 CAGTGCAGCTCGCACGTGCGCTCAACTCGAATCGATAAACGTGTCGGTGGCGTC-TGTGA 316
Query 572 ATG-A-AC-C------TA---TCGCATCGC-AAACCATTGACTTGCAAACGGTGTACAGC 618
| | | || | || | || |||| ||| | | || ||||||||| |||| |||
Sbjct 317 ACGCAGACGCGGATGATATGGTTGCGTCGCGAAA-CGTGGATTTGCAAACGCTGTATAGC 375
Query 619 GTTCAAGGATGGGATCCATATGCATGGGCGTTTGAAGCGGTTG-TGGATCGCGTCCGGTT 677
|||||||| |||||||| |||||||||||||||||||||| | | |||| || |||||
Sbjct 376 GTTCAAGGGTGGGATCCTTATGCATGGGCGTTTGAAGCGGAAGAT-GATCATGTACGGTT 434
Query 678 GGTTTTTAAGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATCATTGACGACAT 737
||||||||| ||||| || ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct 435 GGTTTTTAAAAACCCGGGTATGGAAGATGACCCGACTTGTGGACCAATCATCGATGACAT 494
Query 738 TGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTGATTAATGGAGA 797
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 495 TGCTATTAAGAAGCTCTTTACTCCTGATAAACCCAAAGATAATGCGGTGATTAATGGAGA 554
Query 798 TTTTGAAGAAGGTCCATGGATGTTTAGGAACAC-TAC-CTTAGGTGTTCTGCTTCCAACA 855
||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||| |||
Sbjct 555 TTTCGAAGAAGGTCCATGGATGTTTAGGAACACGT-CTCTT-GGTGTTTTACTTCCGACA 612
Query 856 AACCTCGATGAAGAAATATCGTCTCTTCCTGGATGGACCGTCGAATCGAACCGAGCAGTA 915
|||||||| ||||||| || |||||||| || ||||| || ||||||||| | || ||
Sbjct 613 AACCTCGACGAAGAAACCTCATCTCTTCCGGGTTGGACTGTTGAATCGAACAGGGCGGTT 672
Query 916 CGGTTTATTGACTCAGACCATTTCTCGGTCCCCG-AGGGGAAGCGAGCT-TTGGAACTTT 973
|||||| ||||||| || || ||||| || || | ||| || ||||| ||| | ||
Sbjct 673 CGGTTTGTTGACTCGGATCACTTCTCAGTTCCAGGAGGCAAA-CGAGCCGTTG-AG-TTA 729
Query 974 -TATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGAC-AAAGGC-GA-ACATTCCG 1029
| || |||||||||||||| ||||| |||||||||||||| |||| | || | | |||
Sbjct 730 CTCTCAGGCAAAGAAGGCATTATTTCACAAATGGTTGAGACCAAAG-CAGATAAA--CCG 786
Query 1030 TACAAGAT-GTCTTTCTCTTTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCTGT 1088
|||| || | ||||||| | ||||||||||| || || || |||||||| |||||| |
Sbjct 787 TACAC-ATTGACTTTCTCGCTAGGACACGCAGGTGATAAATGCAAGGAACCATTGGCTAT 845
Query 1089 AATGGCTTTTGCTGGAGATCAAGCACAGAACTTTCATTATATGGCGCAAGCAAACTCGAG 1148
|||||| || || || ||||| || |||||||||||||| ||||||||||| ||||| ||
Sbjct 846 AATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCATTACATGGCGCAAGCGAACTCTAG 905
Query 1149 TTTCGAAA-GATCGGAGTTGAACTTCACTGCGAAAGCTGAACGTACGAG-GATCGCCTTC 1206
|||||||| | ||| ||||| ||||| || || ||||| || || || | |||| |||
Sbjct 906 TTTCGAAAAGGCCGGT-TTGAATTTCACGGCTAAGGCTGATCGAACCAGAG-TCGCGTTC 963
Query 1207 TACAGCATTTATTACAATACGAGGACGGACGATATGA-CTTCATTGTGTGGACCTGTGAT 1265
||||| ||||||||||||||||||| || ||||||| || | |||||||||||||||||
Sbjct 964 TACAGTGTTTATTACAATACGAGGACTGATGATATGAGCTCC-TTGTGTGGACCTGTGAT 1022
Query 1266 TGATGACGTTA-AGGTTTGGTTCTCCGGGTCTA-GTAGAATTGGA 1308
|||||||||| || |||||||||||||||| | | ||||| |||
Sbjct 1023 CGATGACGTTAGAG-TTTGGTTCTCCGGGTCGAAG-AGAATCGGA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5