BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34520.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482413 jgi|Araly1|482413|fgenesh2_kg.4__1473__AT2G34520.1 998 0.0
> Ahg482413 jgi|Araly1|482413|fgenesh2_kg.4__1473__AT2G34520.1
Length=800
Score = 998 bits (540), Expect = 0.0
Identities = 740/829 (89%), Gaps = 44/829 (5%)
Strand=Plus/Plus
Query 3 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCT-CG-------GAATCAATGGCGAG 54
|||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 AGAGAACCCTAAAACCATTTCCGCGGCGGCGTTTCTCCGATTTCCCGAATCAATGGCGAG 60
Query 55 TCTCCGAAGAGTCCTGCTCAACGTAACTTCCTATTGCCAACGTTCTCTCACTCAATCGTC 114
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TCTCCGAGGAGTCCTGCTCAACGTAACTTCCTATTGCCAGCGTTCTCTCACTCAATCGTC 120
Query 115 GTATTCTACGTCGGGGATGTTATCCCGATCGGTGGTCAAGCATGCGAACAATCTCGGTCA 174
| ||||||| |||||| | || || ||||| |||| |||||| ||||||||||||||||
Sbjct 121 GCATTCTACCTCGGGGCTATTGTCTCGATCTATGGTGAAGCATCCGAACAATCTCGGTCA 180
Query 175 AATTCAAGCTAGACATTTCACGACAACGCTTATGAAATCGGGACCAAAGCATAGTGGTAC 234
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTTCAAGCTAAACATTTCACGACAACGCTTATGAAATCGGGACCGAAGCATAGTGGTAC 240
Query 235 AGAGCAAGGCGTGAAGCGAAACAGTGCAGATCACAGACGTAGATTGCTCGCGGCTAGATT 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 AGAGCAAGGCGTGAAGCGAAACAGTGCCGATCACAGACGTAGATTGCTCGCGGCTAGATT 300
Query 295 TGAACTGAGAAGAAAGCTATACAAAGCGTTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 354
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CGAACTGAGAAGAAAGCTATACAAAGCATTTTGCAAAGATCCAGATCTTCCCAGCGAAAT 360
Query 355 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGAGAAT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GCGAGACAAGAATCGTTATAAGCTCTCGAAATTGCCGAGAAACAGTGCCTTTGCGCGAAT 420
Query 415 CAGGAACAGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACTGAGCTGTTCCGTGTTTC 474
||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 421 CAGAAACCGATGTGTGTTCACTGGTCGATCTCGTTCTGTGACGGAGCTGTTTCGTGTGTC 480
Query 475 TCGAATCGTTTTCCGTGGATTAGCATCTAAAGGTGCTTTGATGGGGAT-AACGAAATCGT 533
||||||||| ||||||||||||||| |||||||||||||||||| || || ||| ||||
Sbjct 481 TCGAATCGTGTTCCGTGGATTAGCAAATAAAGGTGCTTTGATGGGAATCAA-GAAGTCGT 539
Query 534 CTTGGTAGCTGCATTATGTGACTGATCTA---T--GG-AAGAAGCTGATTCTGAAGAAAT 587
|||||||||||||| |||||||||||| | | || |||||| |||||||||||||||
Sbjct 540 CTTGGTAGCTGCATCATGTGACTGATCCAAAGTTAGGGAAGAAGATGATTCTGAAGAAAT 599
Query 588 GGGAGCAAGGAATACAAAGAACGTTTGTGGTAAATACAGTTACCAAAGTAGCTGTTTGTA 647
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 600 GGGAGCAAGGAAAACAAAGAACTTTTGTGGTAAATACAATTACCAAAGTAGCTGTTTGTT 659
Query 648 TGATGGTGGTGGAAACATTTTGACACCATCACAAAACTTAGTTTGCTTTTCACTAGTGAT 707
||||||||| || |||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 660 TGATGGTGG---AATCATTTTAACACCATTGCAAAACTTAGTTTGCTTTTCACTAGTGTT 716
Query 708 GCTCTCTCTTTGTTTTACGATCTTGCTCAGCTATTCTAGCAATTCTCGTTGAATAAGTTA 767
||||||| | | | || ||| |||| | | |||||||||||||
Sbjct 717 GCTCTCT---------A---T-T--CT-AGCAATTC---C----C--GTTGAATAAGTTA 751
Query 768 TACAAAGTCACAAATCTTGCTTCTTTTTTATGATCTCGATTTTGTAGTT 816
||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 752 AACAAAGTCACAAATCTTGCTTCTTTTTAATGATCTCGGTTTTGTAGTT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5