BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34530.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901281 jgi|Araly1|901281|Al_scaffold_0004_1931 1230 0.0
> Ahg901281 jgi|Araly1|901281|Al_scaffold_0004_1931
Length=834
Score = 1230 bits (666), Expect = 0.0
Identities = 782/834 (94%), Gaps = 23/834 (3%)
Strand=Plus/Plus
Query 29 ATGAAAACCAAGTATGGAGCAGCAGTTGCACCTGTATTCCTCCTTGCTGCTGCATATGTC 88
||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 1 ATGAAGACCAAGTATGGAGCAGCACTTGCACCTGTCTTCCTCCTTGCTGGTGCATATGTC 60
Query 89 GCTTGGAACTACATAAATCGTGGTTTATGGAGAAAGAAAGACGATGAAAAT-G--GTCGA 145
||||||||||||||||||| |||||| |||||||||||||||||| ||||| | ||||
Sbjct 61 GCTTGGAACTACATAAATCATGGTTTGTGGAGAAAGAAAGACGATAAAAATAGTCGTCGG 120
Query 146 GATA-CAAGAAAAAGCATCGGTAAAAACATTTCAGAACAAAGAAGAGATGGTAATGTTAA 204
|||| | || |||| | | | ||||||||||||||||||||||||||| |||
Sbjct 121 GATATC-AG--AAAG---C-G------CGTTTCAGAACAAAGAAGAGATGGTAATGCTAA 167
Query 205 AAACATGGGTAAGGAGGCTTCTTCAGGAAGAGATGAAAGAACCCTCTCAAAATCTGTTTC 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AAACATGGGTAAGGAGGCTTCTTCAGGAAGAGATGAAAGAACCCTCTCAAAATCTGTTTC 227
Query 265 AATGGGAGCTATTCGAGGAGGAAAATTAGCACTACAGAGATTGCTTGATTTGCACTCATA 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AATGGGAGCTATTCGAGGAGGAAAATTAGCACTACAGAGATTGCTTGATTTGCACTCATA 287
Query 325 CCGCGGTGACACTTCTTCCCTTGCGAATGCTGA-ACTCGAATTTGAAGCATTGCTTTCCA 383
||||| ||| ||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 288 CCGCGTTGATACTTCTTCCCTTGCGAATGCTGAGA-TAGAATTTGAAGCATTGCTTTCCA 346
Query 384 AGGAAAAGCCGGACTTCGGGTTGCTTCAGAGAGACATTGTAAAAATGGAAATGAGTGgaa 443
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 347 AGGAAAACCCGGACTTTGGGTTGCTTCAGAGAGACATTGTGAAAATGGAAATGAGTGGAA 406
Query 444 aagaagcaaaaggagctg-agctattgaa-aaaggcattggagaaagcaagaaaagaagg 501
||||||||||||||| || |||||||||| |||| || ||||||||||||||||||||||
Sbjct 407 AAGAAGCAAAAGGAG-TGGAGCTATTGAAGAAAG-CACTGGAGAAAGCAAGAAAAGAAGG 464
Query 502 gaaagGTCATGAGGCTTATGAGATTGAGATGTTGCTTGTGGAGATGTTGATCTACTTGGG 561
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GAAAGGTCACGAGGCCTATGAGATTGAGATGTTGCTTGTGGAGATGTTGATCTACTTGGG 524
Query 562 AAACATGGAAGAGGCTTCAAAATGTAAGTGTTTAGAGGATGAAGTCATAACAGATGCAAG 621
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AAACATTGAAGAGGCTTCAAAATGTAAGTGTTTAGAGGATGAAGTCATAACAGATGCAAG 584
Query 622 ACGTCCTCTATATCAGACTATAATCCATTACCTTCAAGGTCATCCTATGAAGCAAGTCGA 681
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 585 ACGTCCTCTATATCAGACTATAATCCATTACCTTCGAGGTGATCCTATGAAGCAAGTCGA 644
Query 682 GGAGACATTCAACAGGTTCAGAGAGATTCAAATTGGTCTACAATGGCCTGGAAGCTCAGA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGAGACATTCAACAGGTTCAGAGAGATTCAAATTGGTCTACAATGGCCTGGAAGCTCAGA 704
Query 742 AGAATGTGAAATTGACCAAGTCACATTTGATGAGTTCAAGAAAGTTATGGAATCTCTCAA 801
||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 705 AGAATGTGAGATTGAACAAGTCACGTTTGATGAGTTCAAGAAAGTTATGGAGTCTCTCAA 764
Query 802 GCATGAAATCGAAGACGGCAACAAAAGAAAGTTGAAGTTAGTCAAAGATAAAAC 855
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 765 GCAAGAAATCGAAGACGGCAACAAAAGAAAATTGAAGTTAATCAAAGATAAAAC 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5