BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34540.2 Length=1100 Score E Sequences producing significant alignments: (Bits) Value Ahg482416 jgi|Araly1|482416|fgenesh2_kg.4__1476__AT2G34540.2 1480 0.0 > Ahg482416 jgi|Araly1|482416|fgenesh2_kg.4__1476__AT2G34540.2 Length=1104 Score = 1480 bits (801), Expect = 0.0 Identities = 1012/1110 (91%), Gaps = 29/1110 (3%) Strand=Plus/Plus Query 1 ATGCAATAAAAATCCAATTTTA-T-T-A-----ACTCATAGGAAGAAAAATGGCTTCTAC 52 |||||||||||||||||||||| | | | |||||||||||||||||||||||| || Sbjct 1 ATGCAATAAAAATCCAATTTTATTATCATTTTGACTCATAGGAAGAAAAATGGCTTCAAC 60 Query 53 ATTTCTTCAAGGCCATACTCAAAAACTCACCCTTCCTTTATCTCATTTCACTTCCACACA 112 |||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||||||| Sbjct 61 ATTTCTTCTAGGCCATACTCAGAAACTCACACTTCCTTTTTCTAATTTCACTTCCACACA 120 Query 113 TAAACCAACTCTTAGAT-TC-----CAAAA-CATATATATTGGTTTCCCCTCCAATGGAG 165 ||||||||||||||||| || ||||| | | |||||||| |||||||||||||| | Sbjct 121 TAAACCAACTCTTAGATCTCAAAGTCAAAACCCT-TATATTGGCTTCCCCTCCAATGGCG 179 Query 166 GTCAAAGCCGCCGTTTGATCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAAGA 225 ||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 180 GTCGAAGCGGCTGTTTGTTCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAA-A 238 Query 226 A-TGATTCTCACGATGATAAAAAGCAATTAAGGCCATTGAAAATGGCGGCGGGAGCATCC 284 | ||||| ||||||||||||||||| || | |||||| |||||||| || ||||||||| Sbjct 239 AGTGATTATCACGATGATAAAAAGCTCTTTACGCCATTAAAAATGGCAGCAGGAGCATCC 298 Query 285 CTAGCACTAGCTTGCGCCATAAGTATCTTTGGCTTTAAGATAAATAATATGAGCTACACT 344 |||||||||||||| ||| |||||||||| || ||||||||||| ||||||||||||||| Sbjct 299 CTAGCACTAGCTTGTGCCTTAAGTATCTTCGGGTTTAAGATAAAGAATATGAGCTACACT 358 Query 345 GCCGCGGCAGCTGCCTATCCAAGCTCTGCCGACATGATCATATCCGGGAAGCCGACTTCA 404 || || ||||||||| |||||||| | ||||||||||||||||||||||||||||||||| Sbjct 359 GCTGCCGCAGCTGCCAATCCAAGCGCCGCCGACATGATCATATCCGGGAAGCCGACTTCA 418 Query 405 GCCGCATCCGCTACTTCCGGTATCTATCCTTTCCCAGCTAAATTCGCATTGCGGTCTCTC 464 |||| |||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct 419 GCCGTATCCGCTACTTCCGGTATGTATCCTTTGCCAGCTAAGTTTGCATTGCGGTCTCTC 478 Query 465 TTTGAAGTTAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAAACCATTCAAT 524 |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 479 TTTGAAGTAAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAGGCCATTTAAT 538 Query 525 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGACGATATTGACTCCATCAAGATGGAGGCG 584 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 539 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGAAGATATTGATTCCATTAAGATGGAGGCG 598 Query 585 GTACGGAAGATGAAGGAAGGAAAATGTGAAGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 644 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 599 GTACGGAAGATGAAGGAAGGAAAATGTGAGGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 658 Query 645 ATGCGATACAGAAACGAGCCTGAGGCCAACTTCAACGTGCAGATGGCTCTTGTTGAAATT 704 |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 659 ATGCGATACAAAAACGAGCCTGAGGCCGACTTCAACGTGCAGATGGCTCTCGTTGAGATC 718 Query 705 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 778 Query 765 GCCCAAATTTCTGATGTTCGGATCCCTCTTTATAAGGCAATTATATACACGATGTTAGAC 824 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 779 GCCCAGATTTCTGATGTTCGAATCCCTCTTTATAAGGCAATTATATACACGATGCTAGAC 838 Query 825 AAAGACACGGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 884 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 AAAGATACTGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 898 Query 885 GACCCTTTCAGCTTCGAAGATTAATTAATACTTTTAGATCGATCGATTACTTAAAAATTA 944 |||||||||||||||||||| |||||| ||||| |||||||||| ||||| ||||||||| Sbjct 899 GACCCTTTCAGCTTCGAAGAATAATTAGTACTTGTAGATCGATCTATTACCTAAAAATTA 958 Query 945 TC-TCGTGCCTAAAAACATTCTTGCCACCAGCGGCTAGTGGTGAATAAATTTTAAAAAAT 1003 | || | ||||||| |||| || |||||||| ||||||||||||||||| ||||||| Sbjct 959 TTGTCATCCCTAAAA-CATTTTTACCACCAGCAACTAGTGGTGAATAAATT--AAAAAAT 1015 Query 1004 GTTCGAATGTTAGAAAA--CTTCA-T--T-CCTACGGATATTCTTCCGATTGTTGCACTC 1057 ||||||||||||||||| ||||| | | ||||||||||||||||| |||||||||||| Sbjct 1016 GTTCGAATGTTAGAAAAAACTTCAATCATTCCTACGGATATTCTTCC-ATTGTTGCACTC 1074 Query 1058 GGTCACGTTGTATTTGTTTTTATGCAATAT 1087 | |||||||| ||||| ||||||||||||| Sbjct 1075 GCTCACGTTGAATTTGATTTTATGCAATAT 1104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40982135775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5