BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34540.2
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482416 jgi|Araly1|482416|fgenesh2_kg.4__1476__AT2G34540.2 1480 0.0
> Ahg482416 jgi|Araly1|482416|fgenesh2_kg.4__1476__AT2G34540.2
Length=1104
Score = 1480 bits (801), Expect = 0.0
Identities = 1012/1110 (91%), Gaps = 29/1110 (3%)
Strand=Plus/Plus
Query 1 ATGCAATAAAAATCCAATTTTA-T-T-A-----ACTCATAGGAAGAAAAATGGCTTCTAC 52
|||||||||||||||||||||| | | | |||||||||||||||||||||||| ||
Sbjct 1 ATGCAATAAAAATCCAATTTTATTATCATTTTGACTCATAGGAAGAAAAATGGCTTCAAC 60
Query 53 ATTTCTTCAAGGCCATACTCAAAAACTCACCCTTCCTTTATCTCATTTCACTTCCACACA 112
|||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 61 ATTTCTTCTAGGCCATACTCAGAAACTCACACTTCCTTTTTCTAATTTCACTTCCACACA 120
Query 113 TAAACCAACTCTTAGAT-TC-----CAAAA-CATATATATTGGTTTCCCCTCCAATGGAG 165
||||||||||||||||| || ||||| | | |||||||| |||||||||||||| |
Sbjct 121 TAAACCAACTCTTAGATCTCAAAGTCAAAACCCT-TATATTGGCTTCCCCTCCAATGGCG 179
Query 166 GTCAAAGCCGCCGTTTGATCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAAGA 225
||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GTCGAAGCGGCTGTTTGTTCATCAGATCACCAATCACGGTCGCCAAATCAAACAGCAA-A 238
Query 226 A-TGATTCTCACGATGATAAAAAGCAATTAAGGCCATTGAAAATGGCGGCGGGAGCATCC 284
| ||||| ||||||||||||||||| || | |||||| |||||||| || |||||||||
Sbjct 239 AGTGATTATCACGATGATAAAAAGCTCTTTACGCCATTAAAAATGGCAGCAGGAGCATCC 298
Query 285 CTAGCACTAGCTTGCGCCATAAGTATCTTTGGCTTTAAGATAAATAATATGAGCTACACT 344
|||||||||||||| ||| |||||||||| || ||||||||||| |||||||||||||||
Sbjct 299 CTAGCACTAGCTTGTGCCTTAAGTATCTTCGGGTTTAAGATAAAGAATATGAGCTACACT 358
Query 345 GCCGCGGCAGCTGCCTATCCAAGCTCTGCCGACATGATCATATCCGGGAAGCCGACTTCA 404
|| || ||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 359 GCTGCCGCAGCTGCCAATCCAAGCGCCGCCGACATGATCATATCCGGGAAGCCGACTTCA 418
Query 405 GCCGCATCCGCTACTTCCGGTATCTATCCTTTCCCAGCTAAATTCGCATTGCGGTCTCTC 464
|||| |||||||||||||||||| |||||||| |||||||| || |||||||||||||||
Sbjct 419 GCCGTATCCGCTACTTCCGGTATGTATCCTTTGCCAGCTAAGTTTGCATTGCGGTCTCTC 478
Query 465 TTTGAAGTTAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAAACCATTCAAT 524
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 479 TTTGAAGTAAGCTCAATGCTTGCTTCGGCTAAACCCATTCCTTCTCAAAGGCCATTTAAT 538
Query 525 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGACGATATTGACTCCATCAAGATGGAGGCG 584
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 539 CTTCACAAGCTCCCTTCTTTGCCTTCAAAGGAAGATATTGATTCCATTAAGATGGAGGCG 598
Query 585 GTACGGAAGATGAAGGAAGGAAAATGTGAAGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 644
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 GTACGGAAGATGAAGGAAGGAAAATGTGAGGAGGCGGTGCAGCTCCTTCGTGACGCAAAC 658
Query 645 ATGCGATACAGAAACGAGCCTGAGGCCAACTTCAACGTGCAGATGGCTCTTGTTGAAATT 704
|||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 659 ATGCGATACAAAAACGAGCCTGAGGCCGACTTCAACGTGCAGATGGCTCTCGTTGAGATC 718
Query 705 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAATATTGCTGGAAAGGTATCAAGAAGCTGCTGAGTATAGTTGTCTAAATGACGAGAAT 778
Query 765 GCCCAAATTTCTGATGTTCGGATCCCTCTTTATAAGGCAATTATATACACGATGTTAGAC 824
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 779 GCCCAGATTTCTGATGTTCGAATCCCTCTTTATAAGGCAATTATATACACGATGCTAGAC 838
Query 825 AAAGACACGGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 884
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAGATACTGAAGCCAAGCAGTGTTGGAAAGAGTTCAGAAAATCTATTGGTGAAGGATTT 898
Query 885 GACCCTTTCAGCTTCGAAGATTAATTAATACTTTTAGATCGATCGATTACTTAAAAATTA 944
|||||||||||||||||||| |||||| ||||| |||||||||| ||||| |||||||||
Sbjct 899 GACCCTTTCAGCTTCGAAGAATAATTAGTACTTGTAGATCGATCTATTACCTAAAAATTA 958
Query 945 TC-TCGTGCCTAAAAACATTCTTGCCACCAGCGGCTAGTGGTGAATAAATTTTAAAAAAT 1003
| || | ||||||| |||| || |||||||| ||||||||||||||||| |||||||
Sbjct 959 TTGTCATCCCTAAAA-CATTTTTACCACCAGCAACTAGTGGTGAATAAATT--AAAAAAT 1015
Query 1004 GTTCGAATGTTAGAAAA--CTTCA-T--T-CCTACGGATATTCTTCCGATTGTTGCACTC 1057
||||||||||||||||| ||||| | | ||||||||||||||||| ||||||||||||
Sbjct 1016 GTTCGAATGTTAGAAAAAACTTCAATCATTCCTACGGATATTCTTCC-ATTGTTGCACTC 1074
Query 1058 GGTCACGTTGTATTTGTTTTTATGCAATAT 1087
| |||||||| ||||| |||||||||||||
Sbjct 1075 GCTCACGTTGAATTTGATTTTATGCAATAT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5