BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34555.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482417 jgi|Araly1|482417|fgenesh2_kg.4__1477__AT2G34555.1 1722 0.0
> Ahg482417 jgi|Araly1|482417|fgenesh2_kg.4__1477__AT2G34555.1
Length=1121
Score = 1722 bits (932), Expect = 0.0
Identities = 1060/1123 (94%), Gaps = 4/1123 (0%)
Strand=Plus/Plus
Query 3 AACAAGCGACTATAAATTAGTGCTAAGAAAACACCCTTTTCACCAAATTCACTCTCTTTT 62
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AACAAGCGACTATAAAATACTGCTAAGAAGACACCCTTTTCACCAAATTCACTCTCTTCG 60
Query 63 CAACAATCTTTATTTTTCAAAGTTCTT-GTTTAAAAGACCAAAAGAGTAGACCATGGTAA 121
|||||||||||||| ||||||||| || |||||| ||||||||||||||||| |||||||
Sbjct 61 CAACAATCTTTATTCTTCAAAGTT-TTGGTTTAATAGACCAAAAGAGTAGACTATGGTAA 119
Query 122 TTGTGTTACAGCCAGCCAGTTTTGATAGCAACCTCTATGTTAATCCAAAATGCAAACCGC 181
|| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 120 TTATCTTACAGCCAGCCACTTTTGATAGCAACCTCTATGTTAACCCAAAATGCAAACCGA 179
Query 182 GTCCGGTTTTAATCCCTGTTATAGACTTAACCGACTCAGATGCCAAAACCCAAATCGTCA 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 GTCCGGTTTTAATCCCTGTTATAGACTTAACCGACTCAGACGCCAAAACCCAAATCGTCA 239
Query 242 AGGCATGTGAAGAGTTTGGGTTCTTCAAAGTCATCAACCATGGGGTCCGACCCGATCTTT 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 AGGCATGTGAAGAGTTTGGGTTCTTCAAAGTCATCAACCATGAGGTCCGACCCGATCTTT 299
Query 302 TGACTCAGTTGGAGCAAGAAGCCATCAACTTCTTTGCTTTGCATCACTCTCTCAAAGACA 361
|| | ||||||||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 300 TGTCCCAGTTGGAGCAAGAAGCCATCAAGTTCTTTGCTTCGCCTCACTCTCTCAAAGACA 359
Query 362 AAGCGGGTCCACCTGACCCGTTTGGTTACGGTACTAAAAGGATTGGACCCAATGGTGACC 421
| || ||||||| ||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 360 AGGCAAGTCCACCCGACCCGTTTGGATACGGTACTAAACGGATCGGACCCAATGGTGACG 419
Query 422 TTGGCTGGCTTGAGTACATTCTCCTTAATGCTAATCTTTGCCTTGAGTCTCACAAAACCA 481
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 TAGGCTGGCTTGAGTATATTCTTCTTAATGCTAATCTTTGCCTTGAGTCTCACAAAACCA 479
Query 482 CCGCCATTTTCCGGCACACCCCTGCAATTTTCAGAGAGGCAGTGGAAGAGTACATTAAAG 541
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 CAGCCGTTTTCCGGCACACCCCTGCAATTTTCAGAGAGGCAGTGGAAGAGTACATGAAAG 539
Query 542 AGATGAAGAGAATGTCGAGCAAATTTCTGGAAATGGTAGAGGAAGAGCTAAAGATAGAGC 601
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 540 AGATGAAGAGAATGTCGAGCAAAGTTCTTGAAATGGTAGAGGAAGAGTTAAAGATAGAGC 599
Query 602 CAAAGGAGAAGCTGAGCCGTTTGGTGAAAGTGAAAGAAAGTGATTCGTGCCTGAGAATGA 661
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 600 CAAAGGAGAAGCTGAGCCATTTGGTGAAAGTGAAGGAAAGTGATTCGTGTCTGAGGATGA 659
Query 662 ACCATTACCCGGAGAAGGAAGAGACTCCGGTCAAGGAAGAGATTGGGTTCGGTGAGCACA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACCATTACCCGGAGAAGGAAGAGACTCCGGTCAAGGAAGAGATTGGGTTCGGTGAGCACA 719
Query 722 CTGATCCACAGTTGATATCACTGCTCAGATCAAACGACACAGA-GGGTTTGCAAATCTGT 780
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 720 CTGATCTACAGTTGATATCACTGCTCAGATCAAACGACAC-GAAGGGTTTTCAAATCTGT 778
Query 781 GTCAAAGATGGAACATGGGTTGATGTTACACCTGATCACTCCTCTTTCTTCGTTCTTGTC 840
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GTCAAAGATGGAACTTGGGTCGATGTTACACCTGATCACTCCTCTTTCTTCCTTCTTGTC 838
Query 841 GGAGATACTCTTCAGGTGATGACAAACGGAAGATTCAAGAGTGTGAAACATAGAGTGGTG 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGAGATACTCTTCAGGTGATGACAAACGGAAGATTCAAGAGTGTGAAACATAGAGTGGTC 898
Query 901 ACAAATACAAAGAGGTCAAGGATATCGATGATCTACTTCGCAGGTCCTCCTTTGAGCGAG 960
|| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 899 ACTAATACAAAAAGGTCAAGAATATCGATGATCTACTTCGCAGGTCCTCCTTTAAGCGAG 958
Query 961 AAGATTGCACCATTATCATGCCTTGTGCCAAAGCAAGATGATTGCCTTTATAATGAGTTT 1020
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 AAGATTGCACCATTGTCATGCCTTGTCCCAAAGCAAGATGATTGCCTTTATAATGAGTTT 1018
Query 1021 ACTTGGTCTCAATACAAGTTATCTGCTTACAAAACTAAGCTTGGTGACTATAGGCTTGGT 1080
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1019 ACTTGGTCTCAATACAAGTTATCTGCTTACAAGACTAAGCTTGGTGGCTATAGGCTTGGT 1078
Query 1081 CTCTTTGAGAAACGACCTCCATTTTCTCTATCCAATGTTTGAG 1123
|||||||||| || ||||||||||||| |||||| ||||||||
Sbjct 1079 CTCTTTGAGAGACCACCTCCATTTTCTTTATCCAGTGTTTGAG 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5