BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34560.2
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482419 jgi|Araly1|482419|fgenesh2_kg.4__1479__AT2G34560.2 2122 0.0
> Ahg482419 jgi|Araly1|482419|fgenesh2_kg.4__1479__AT2G34560.2
Length=1359
Score = 2122 bits (1149), Expect = 0.0
Identities = 1275/1332 (96%), Gaps = 24/1332 (2%)
Strand=Plus/Plus
Query 75 AAAGATGGCCACCGATGAGCCTTCTCAAACTCGCTGGAGCTTTCTGGAATTTAAAACGTT 134
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAGATGGCCACCGATGAGCCTTCTCAAACTCGCTGGAGCTTTCTGGAGTTTAAAACGTT 60
Query 135 TTATGATGCCAAGTTTGGGAGGAAGAAGCTGCCTGAAGAAGATGTATCAAACAAGGACCA 194
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 61 TTATGATGCCAAGTTTGGGAGGAAGAAGCTGCCTGAAGAAGACGAATCCAACAAGGACCA 120
Query 195 ACCAGAAGATGGATCATCCAACGGTAATAACGGTGATGTCAACAACAACTCTTCCCCAGT 254
||||||||||||||||| | | ||| ||||||||||||||||||||||||| |||
Sbjct 121 ACCAGAAGATGGATCAT-C--C---AAT---GGTGATGTCAACAACAACTCTTCCCAAGT 171
Query 255 CACCAATCAGGATGGTAACACAGCCTTGGCCAATGGCAATGTGATTCGCGAGAAGCCGAA 314
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 172 CACCAATCAGGATGGTAACACAGGCTTGGCCAATGGCAATGTGATTCGCGAGAAGCCGAA 231
Query 315 AAAGTCCATGTTTCCCCCGTTTGAGTCTGCGGAAACTCGTACTCTCGCTGAGAGTTTGAG 374
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 232 AAAGTCCATGTTTCCACCTTTTGAATCTGCGGAAACTCGTACTCTCGCTGAGAGTTTGAG 291
Query 375 TAGGGATATCATCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGTTTGGAGAA 434
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 292 TAGGGATATCATCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGGTTGGAGAA 351
Query 435 CGCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACGTACTTTAA 494
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 352 CGCGAAAAAGCTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACCTACTTTAA 411
Query 495 TGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGAC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCTCCTGGTACCGGAAAGAC 471
Query 555 TATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTC 614
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 472 TATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAATATCTCAGCCTC 531
Query 615 ATCTGTTGTTAGCAAATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTTCTGTTCGATCT 674
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 ATCTGTTGTTAGCAAATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTTCTTTTCGATCT 591
Query 675 AGCTAGGCATCATGCACCTTCGACAATATTTCTTGATGAGATCGACGCGATCATAAGCCA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGCTAGGCATCATGCACCTTCGACAATATTTCTTGATGAGATCGACGCGATCATAAGCCA 651
Query 735 ACGTGGTGGTGAAGGCCGCAGTGAACATGAAGCTAGCAGGCGTCTCAAAACCGAGCTGCT 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACGTGGTGGTGAAGGCCGCAGTGAACATGAAGCTAGCAGGCGTCTCAAAACCGAGCTGCT 711
Query 795 CATTCAGATGGATGGGTTACAGAAAACGAATGAGCTCGTATTTGTTTTAGCAGCAACAAA 854
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 712 CATTCAGATGGATGGGTTACAGAAAACGAATGAGCTCGTTTTTGTTTTAGCAGCAACAAA 771
Query 855 TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAATTCTTGTACC 914
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGTCGTCTAGAGAAACGAATTCTTGTACC 831
Query 915 TTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCT-TATACCGTCACAACCAG 973
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 832 TTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCTCT-TGCCGTCACAACCAG 890
Query 974 GTGATGAGCCATTGCCTCATGATGTGTTGGTTGAGAAATCTGAGGGCTACTCTGGTTCAG 1033
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 891 GCGATGAGCCATTGCCTCATGATGTGCTGGTTGAGAAATCTGAGGGCTACTCTGGTTCAG 950
Query 1034 ACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTT 1010
Query 1094 TGGAAGACAGAGAAGATGTTGTGCCTGAAGACGAGCTGCCAAAAATTGGTCCCATCCTGC 1153
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1011 TGGAAGACAGAGAAGATGTTGTGCCTGAAGATGAGCTGCCAAAAATTGGACCCATCCTAC 1070
Query 1154 CAGAAGACATTGATCGAGCTCTGAGCAACACTCGACCATCGGCTCATCTGCACGCCCATC 1213
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1071 CAGAAGACATTGATCGAGCTCTGAGTAACACTCGACCATCGGCTCATCTGCACGCCCATC 1130
Query 1214 TTTACGACAAGTTCAATGATGATTATGGTAGCCAAATTCTCAAGTAAATTCGATGTAATA 1273
|||||||||||||||||||||||||||||||||||||||| ||| | | || |
Sbjct 1131 TTTACGACAAGTTCAATGATGATTATGGTAGCCAAATTCT----TAA----G-T--AA-A 1178
Query 1274 TATACATCTATGCCATCTAGAACTTGCTCATTATTTGTATGGAAGCATCCAAATTACGGA 1333
||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 1179 -ATACATCTATGTCATCTAGAACTTGATCATTATTTGTATGGAAGCATTCACATTACGGA 1237
Query 1334 TGCTCAATGAACTTTTCTGTCTTAAATTATGAATAAATGCTCCTAGTTCCTTGGGACTCA 1393
||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 1238 TGCTCAAAGAACTTTTCTGTCTTAAATTATGAATAAACGCTCCTACTTGCTTGGGACTCA 1297
Query 1394 GTTTCAGCGTAT 1405
||||||| ||||
Sbjct 1298 GTTTCAGGGTAT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5