BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34570.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482420 jgi|Araly1|482420|fgenesh2_kg.4__1480__AT2G34570.1 1413 0.0
> Ahg482420 jgi|Araly1|482420|fgenesh2_kg.4__1480__AT2G34570.1
Length=973
Score = 1413 bits (765), Expect = 0.0
Identities = 874/927 (94%), Gaps = 5/927 (1%)
Strand=Plus/Plus
Query 96 aagaagatgagagtgaagaggcagaagaaaaacaggagaaccgtgagaTTCTTCACGGTC 155
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 AAGAAGATGAGAGTTAAGAGGCAGAAGAAAAACAGGAGAACCGTGAGATTCTTCACGGTC 108
Query 156 TGTTACGGATTCCGTCAACCCTACAAAGTCCTTTGCGACGGCACTTTCGTCCACCATCTT 215
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 TGTTATGGATTCCGACAGCCCTACAAAGTCCTTTGCGACGGCACTTTCGTCCACCATCTT 168
Query 216 GTCACTAATGAGATCACTCCCGCCGACACTGCTGTCTCTGAACTCCTCGGAGGTCCCGTC 275
|| ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 169 GTTTCTAATGAGATCACTCCCGCCGACACTGCTATCTCCGAACTCCTCGGTGGTCCCGTC 228
Query 276 AAGCTCTTCACCACCAGATGTGTGATTGCGGAGTTGGAGAAACTGGGTAAAGATTTTGCG 335
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 229 AAGCTCTTCACCACCAGATGTGTGATTGCGGAGTTGGAGAAATTGGGGAAAGATTTTGCG 288
Query 336 GAATCTCTCGAAGCTGCCCAGACGCTTAATACAGCAACATGTGAGCACGAGGAGGCAAAA 395
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 289 GAATCTCTCGAAGCTGCCCAGATGCTTAGTACAGCAACATGTGAGCACGAGGAGGCAAAA 348
Query 396 ACAGCAGACGAGTGTTTGTCAGAGGTAATAGGGGT-ACAAAATACTGAGCATTTCTTCCT 454
||||||| ||||||||||||||||| ||||| | | ||||| ||||||||||||||||
Sbjct 349 GCAGCAGATGAGTGTTTGTCAGAGGTGATAGGTATGA-AAAATTCTGAGCATTTCTTCCT 407
Query 455 TGGTACTCAGGACGCGGAGTTTAGGAGAAAGCTTCAGCAGGAGTCTATAGTTCCTCTTGT 514
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 408 CGGTACTCAGGATGCGGAGTTTAGGAGAAAACTTCAGCAGGAGTCTATCGTTCCTCTTGT 467
Query 515 GTTTGGTCTAAGGAACATACTGCTGATTGATCAACCTTCTGATTTCCAACGTCAGAGTGC 574
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 468 GTTTGGTTTAAGGAACATACTGCTGATTGATCAACCGTCTGATTTCCAACGTCAGACCGC 527
Query 575 CAAAGACTCTGAAAATAAGCGCTTAACTATGACCGATACGGaaaaaaaGTTGTTGGTGAA 634
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 528 CAAAGACTCTGAAAATAAGCGCTTAACTATGACCGAGACAGAAAAAAAGATGTTGGTGAA 587
Query 635 ACGGACTGCGAAAATCATAGCTTCTAATAGA-AAAGAAGCAACAATTGCAAATGAAGAAT 693
||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||
Sbjct 588 ACGGACTGCGAAAATCATAGCTTCTAATAGAGAAA-AAGGAACAATTGAAAATGAAGAAT 646
Query 694 GGGGAATGCCTCGAGTAGTTTCTACAAAAAATGGACTTGGTGTGAAGGATAGACCTCAGT 753
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 647 GGGGAATGCCTAGAGTAGTTTCTACAAGAAATGGACTTGGTGTGAAGGATAGACCTCAGT 706
Query 754 TCAAGCGAAATAGAGCCAAGGGTCCAAACCCACTTTCATGCATGAAGAAAAAGAAGGAGA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TCAAGCGAAATAGAGCCAAGGGTCCAAACCCACTTTCATGCATGAAGAAAAAGAAGGAGA 766
Query 814 ATCCTCAATCCAAATCCAAAGCCGATTCTAACTCTAATGCAcaaaaggaaaagaaagaag 873
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 767 AACCTCAATCCAAATCCAAAGCCGATTCTAACTCTGGTGCACAAAAGGAAAAGAAAGAAG 826
Query 874 gcgggagcgatacacaaaagaggtcaagaaaacggtcaaaaaaaGGAAAGTCTGGTCCGG 933
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCGAGAGCGATACAAAAAAGAGGTCAAGAAAACGGTCAAAAAAAGGAAAGTCTGGTCCGG 886
Query 934 AGAGAACCGAGTGAAAACA-GTTGTTTTATATATAACACATCTTGAGTCCTTACTTTTTC 992
|||||||||| |||||| | ||| ||| |||| |||||| |||| | || ||||||||||
Sbjct 887 AGAGAACCGACTGAAAAGATGTTATTTCATATTTAACACTTCTTTAATCGTTACTTTTTC 946
Query 993 TACTGCATACAAAAATTTTGGTCACCA 1019
|||||||||||||||||||||||||||
Sbjct 947 TACTGCATACAAAAATTTTGGTCACCA 973
Score = 87.9 bits (47), Expect = 1e-16
Identities = 50/51 (98%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 21 aaaaaaaaCTAAAACCCTAATTCCAGCGTCGTCTTCGCGCTCTgagaaaaa 71
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAAAAAACTAAAACCCTAATTCCAGCGTCGTCTTCGCGCTCTGA-AAAAA 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5