BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34580.1

Length=990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg901286 jgi|Araly1|901286|Al_scaffold_0004_1936                    610    6e-174


> Ahg901286 jgi|Araly1|901286|Al_scaffold_0004_1936
Length=441

 Score =  610 bits (330),  Expect = 6e-174
 Identities = 397/430 (92%), Gaps = 2/430 (0%)
 Strand=Plus/Plus

Query  34   ATGGCGCTTTCTTCAGCTTTCAAGGAGAGGCTCGATCAAATGGAGTTCACCAGAAACCAA  93
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGCTTTCTTCAGCTTTCAAGGAGAGACTCGATCAAATGGAGTTCACCAGAAACCAA  60

Query  94   CGACTCAATCTTCTCCAGGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCA  153
            |||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||
Sbjct  61   CGACTCGATCTTCTCCAGGCGGAGAAAGAGTTACAAGTGAACAAATCACAGATTTTAGCA  120

Query  154  TCGAAGCACGCAACTATACAATCCATTGAACGCAGATGTTTGATGCTAGAACAGAAAATA  213
            ||||||||| ||| |||||||||||| ||||||||||||||||| || || || ||||| 
Sbjct  121  TCGAAGCACACAAGTATACAATCCATAGAACGCAGATGTTTGATACTCGACCAAAAAATT  180

Query  214  GCAGCACAAAACCTGAAGATCACAATTCTCAGATCTAACATCGATGATCTCGACTCCAAA  273
            || ||||||||||| ||||||||| |||||| |||||||||||| |||||||| ||||||
Sbjct  181  GCTGCACAAAACCTCAAGATCACAGTTCTCAAATCTAACATCGAAGATCTCGATTCCAAA  240

Query  274  TACCACAGCTATATACAACAATTGAGGA-CACTGAAGATTGAGGTTGAGGAGCTGAAAGA  332
            |||||| ||| ||||||||| ||||||| | ||||||| ||||||||| ||||||| |||
Sbjct  241  TACCACGGCTCTATACAACAGTTGAGGAGC-CTGAAGAGTGAGGTTGAAGAGCTGAGAGA  299

Query  333  GTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTAT  392
            |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GTTAGACGAAGAAAGGGACAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTAT  359

Query  393  GCAAAATGTTGAGAGGTTTAGATCAGAGAACCGGTTACAAATCGAGAACCTGCGAAACCG  452
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  360  GCAAAATGTTGAGAGGTTTAGATCAGAGAACCGGGTACAAATCGAGAACCTGAGAAACCG  419

Query  453  AATCAAGGAG  462
            |||||| |||
Sbjct  420  AATCAAAGAG  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36788614905


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5