BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34585.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934057 jgi|Araly1|934057|scaffold_402045.1 440 5e-123
> Ahg934057 jgi|Araly1|934057|scaffold_402045.1
Length=286
Score = 440 bits (238), Expect = 5e-123
Identities = 270/286 (94%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 146 AGAGAGAAAGAGAGATCTCAATGGCGGCGATAACAAGCGCGGTGATAGCAATAGCCGGAA 205
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAGAGAGAAAGATCTCAATGGCGGCGATAACAAGCGCGGTGATAGCAATAGCCGGAA 60
Query 206 TAATCTTGGGATGGATAACGATAGAGTTAGCTTGTAAGCCTTGCCTGGAGTCGGGCCGTG 265
| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 TTATATTGGGATGGATAACGATAGAGTTAGCTTGTAAGCCTTGCCTGGAAACAGGCCGTG 120
Query 266 AAGCCATCGACAGATCTCTCAATCCCGATTACGATCCTGATGACCAAGACGTCGACTCAT 325
||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 121 AAGTCATCGACAGATCTCTCAATCCTGATTACGATCCCGATGACCAAGACGTCGACACAT 180
Query 326 CTTCCGATGTTCGTGCTCCTCTCATCCCTAATCATCCTCCCGATAATTCCGATCCTGATC 385
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 181 CTTCCGATGTTCGTGCTCCTCTCATCCCAAATCATCCTCCAGATAACTCCGATCCTGATC 240
Query 386 CCACCACCGCGATCAAGTCCGTCTGATCGATCTTGAGTTTTGTTTG 431
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCCACCGCGATCAAGTCCGTCTGATCGATCTTGAGTTTTGTTTG 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5