BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34590.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482422 jgi|Araly1|482422|fgenesh2_kg.4__1482__AT2G34590.1 2015 0.0
Ahg473230 jgi|Araly1|473230|fgenesh2_kg.1__3184__AT1G30120.1 1133 0.0
> Ahg482422 jgi|Araly1|482422|fgenesh2_kg.4__1482__AT2G34590.1
Length=1332
Score = 2015 bits (1091), Expect = 0.0
Identities = 1202/1255 (96%), Gaps = 9/1255 (1%)
Strand=Plus/Plus
Query 103 CTCTCTTTGGTTTTCTCGGAAAAATGTCTGCG--A-TACTCC-A--A---GGAGCTGGAG 153
|||||| ||||||||||||||||||||||||| | |||||| | | ||||||||||
Sbjct 78 CTCTCTCTGGTTTTCTCGGAAAAATGTCTGCGATACTACTCCAAGGAGCTGGAGCTGGAG 137
Query 154 CTGCAACGGCTCTCTCGCCGTTTAATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTC 213
||||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||
Sbjct 138 CTGCAACGGCTCTCTCGCCGTTTAACTCTATTGATCCCAACAAACTCGTAGTTCCTTCTC 197
Query 214 GCTCTTCTCTTTCAGTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCT 273
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GCTCATCTCTTTCAGTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCT 257
Query 274 TTGGTTCTAGCCTCGTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGACGA 333
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 258 TTGGTTCTAGCCTCATAGTTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTGCGGCGA 317
Query 334 AGGCGGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGACATGAGCTATTACTTTTCG 393
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 318 AGGCAGACACTGCTGCGAGCTCTACTTCATCAAAGCCTGGACATGAGCTATTGCTTTTCG 377
Query 394 AGGCTCTTCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AGGCTCTTCAAGAAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGG 437
Query 454 GTGAAGATGTAGGCCATTACGGAGGCTCATACAAAGTAACTAAAGGCCTAGCTGATAAGT 513
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 438 GTGAAGACGTAGGCCATTACGGAGGCTCATACAAAGTAACCAAAGGGCTAGCTGACAAGT 497
Query 514 TTGGCGATCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCA 573
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCGGCGATCTCAGGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCA 557
Query 574 TTGGAGCCGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTCTAC 633
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTGGTGCTGCCATGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTCTAC 617
Query 634 TCTTAGCCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTATACATCCGGTGGTC 693
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 618 TCTTAGCCTTCAACCAAATCTCCAACAACTGTGGTATGCTTCACTACACATCCGGTGGTC 677
Query 694 AATTCACTATCCCGGTTGTTATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTCGGAGCCG 753
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 678 AATTCACTATCCCGGTTGTAATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTTGGAGCCG 737
Query 754 AGCATTCCCAGCGTCTCGAGTCTTACTTCCAGTCAATCCCTGGGATCCAGATGGTGGCTT 813
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 738 AGCATTCCCAGCGTCTCGAGTCATACTTCCAGTCAATTCCTGGGATCCAGATGGTGGCTT 797
Query 814 GCTCAACACCTTACAACGCTAAAGGATTGATGAAAGCGGCGATAAGAAGTGAGAATCCTG 873
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 798 GCTCAACACCTTACAACGCTAAAGGATTGATGAAAGCTGCGATAAGAAGCGAGAATCCTG 857
Query 874 TGATTCTGTTTGAACACGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAAT 933
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGATTCTGTTTGAACATGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAAT 917
Query 934 ACATATGTAATCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGA 993
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 918 ACATCTGTAATCTGGAAGAAGCGGAAATGGTCAGACCCGGTGAACACATCACGATACTGA 977
Query 994 CGTATTCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CGTATTCAAGGATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGT 1037
Query 1054 ATGATCCAGAGGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCTCTACACAATTGGAA 1113
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1038 ATGATCCAGAGGTTATCGACATTAGGTCGTTGAAGCCGTTCGATCTCTACACCATTGGAA 1097
Query 1114 ACTCGGTGAAGAAGACACACCGGGTTTTGATTGTGGAGGAATGTATGAGAACGGGAGGAA 1173
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1098 ACTCCGTGAAGAAGACACACCGGGTTTTAATTGTGGAGGAATGTATGAGAACGGGAGGAA 1157
Query 1174 TCGGAGCCAGTTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTAGATGCTCCGG 1233
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1158 TCGGAGCCAGCTTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTGGATGCTCCAG 1217
Query 1234 TGATGTGTTTGTCTTCTCAGGATGTCCCAACTCCTTACGCCGGTACATTGGAAGAATGGA 1293
||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||||||
Sbjct 1218 TGATGTGTTTGTCTTCTCAAGATGTTCCAACTCCTTACGCTGGCACATTGGAGGAATGGA 1277
Query 1294 CGGTTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTTTGCCAGTAATT 1348
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1278 CGGTTGTTCAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTCTGCCAGTAATT 1332
Score = 87.9 bits (47), Expect = 2e-16
Identities = 75/87 (86%), Gaps = 8/87 (9%)
Strand=Plus/Plus
Query 1 CGATTTCTCCGCTCTTCTCCACTCTTCTTCTCTGTTCTATCGCAG-AC-ATTTTTGTTTA 58
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1 CGATTTCTCCGCTCTTCTCCACTCTTCTTCTCTGTTCTATCT-ATCACCATTTTTGTTTA 59
Query 59 TATGCATACATAATAATAATACACTCT 85
||| || |||| | ||||| |||||
Sbjct 60 TAT--ATGCATAC-A-TAATA-ACTCT 81
> Ahg473230 jgi|Araly1|473230|fgenesh2_kg.1__3184__AT1G30120.1
Length=1490
Score = 1133 bits (613), Expect = 0.0
Identities = 1041/1245 (84%), Gaps = 40/1245 (3%)
Strand=Plus/Plus
Query 122 AAAAATGTCTGCGATACTCCAAGGAGCTGGAGCTGC-A--ACGGC-TCTCTCGCCGTTTA 177
|||||||||| ||||| |||| |||||||||||||| | ||| | | | ||| ||||||
Sbjct 86 AAAAATGTCTTCGATAATCCATGGAGCTGGAGCTGCTACGACGACGT-TATCGACGTTTA 144
Query 178 ATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGTGAGGAGCA 237
|||| |||||||||| | |||||| |||||||||||| | ||||||||||||||||
Sbjct 145 ATTCCGTCGATTCCAAGATACTCGTAGCTCCTTCTCGCACAAATCTTTCAGTGAGGAGCC 204
Query 238 AGAGATACATTGTTGCCGGATCTGAT---AGT-A-A--AAG--CTTTGGTTCTAGCCTC- 287
||||||| || || || ||||||||| ||| | | ||| |||||||||| | |||
Sbjct 205 AGAGATATATAGTGGCTGGATCTGATGCGAGTAAGAGGAAGAACTTTGGTTCTGGACTCA 264
Query 288 GTAGCTCGTCGCTCTGAGCCGTTGATACCAAATGCTGTTACGACGAAGGCGGACACTGCT 347
| || ||||| |||| || ||||| |||||||||||| ||||||| || | |
Sbjct 265 G-AGTTCGTCACTCTCAGAAATTGATTCCAAATGCTGTTGCGACGAA---GG--A--G-- 314
Query 348 GCGAGCTCTACTTCAT-CAAAGC-CTGGACATGAGCTATTACTTTTCGAGGCTCTTCAAG 405
||| | | || || | | ||| |||||||||| ||||| ||||||||||||||||| |
Sbjct 315 GCG-G-AC-ACATC-TGC-GAGCACTGGACATGAACTATTGCTTTTCGAGGCTCTTCAGG 369
Query 406 AAGGTCTAGAAGAAGAGATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTAG 465
||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 370 AAGGTCTGGAAGAAGAAATGGACAGAGATCCACATGTCTGTGTTATGGGTGAAGATGTTG 429
Query 466 GCCATTACGGAGGCTCATACAAAGTAACTAAAGGCCTAGCTGATAAGTTTGGCGATCTCA 525
|||||||||||||||| ||||| ||||| ||||| || |||||||| || ||||| ||||
Sbjct 430 GCCATTACGGAGGCTCTTACAAGGTAACCAAAGGTCTTGCTGATAAATTCGGCGACCTCA 489
Query 526 GGGTTCTGGACACTCCAATCTGTGAAAACGCCTTCACCGGTATGGGCATTGGAGCCGCCA 585
||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 490 GGGTTCTCGACACTCCTATTTGTGAAAATGCATTCACCGGTATGGGCATTGGAGCCGCCA 549
Query 586 TGACAGGACTAAGACCCGTCATCGAAGGTATGAACATGGGGTTTC-TACTCTTAGCCTTC 644
|||| || |||||||||||||| ||||||||||||||||| |||| | ||| | ||||||
Sbjct 550 TGACTGGTCTAAGACCCGTCATTGAAGGTATGAACATGGG-TTTCCTCCTCCTCGCCTTC 608
Query 645 AACCAAATCTCCAACAACTGTGGTATGCTTCACTATACATCCGGTGGTCAATTCACTATC 704
||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||| |||
Sbjct 609 AACCAAATCTCTAACAACTGTGGAATGCTTCACTACACATCTGGTGGTCAGTTCACGATC 668
Query 705 CCGGTTGTTATCCGTGGGCCTGGAGGTGTGGGCCGGCAGCTCGGAGCCGAGCATTCCCAG 764
|| ||||| |||||||||||||| || ||||| || ||||| || || |||||||| |||
Sbjct 669 CCAGTTGTCATCCGTGGGCCTGGTGGAGTGGGACGTCAGCTTGGCGCTGAGCATTCACAG 728
Query 765 CG-TCTCGAGTCTTACTTCCAGTCAATCCCTGGGATCCAGATGGTGGCTTGCTCAACACC 823
|| | | || |||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 729 CGGT-TAGAATCTTACTTCCAGTCCATCCCTGGGATCCAGATGGTTGCTTGCTCTACTCC 787
Query 824 TTACAACGCTAAAGGATTGATGAAAGCGGCGATAAGAAGTGAGAATCCTGTGATTCTGTT 883
||||||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 788 TTACAACGCCAAAGGCTTGATGAAAGCCGCGATAAGAAGCGAGAACCCCGTGATTCTGTT 847
Query 884 TGAACACGTTCTGCTCTATAACCTCAAGGAGAGTATTCCGGATGAAGAATACATATGTAA 943
|||||||||||||| || || |||||||||| || ||||||||||| ||||| |||||
Sbjct 848 CGAACACGTTCTGCTTTACAATCTCAAGGAGAAAATCCCGGATGAAGATTACATCTGTAA 907
Query 944 TCTGGAAGAAGCAGAAATGGTCAGACCCGGTGAACACATCACGATACTGACGTATTCAAG 1003
|| |||||||| || ||||||||||| || || ||||| || || || || || || |
Sbjct 908 CCTTGAAGAAGCTGAGATGGTCAGACCTGGCGAGCACATTACCATCCTCACTTACTCGCG 967
Query 1004 GATGAGGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCAGA 1063
||||||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||
Sbjct 968 GATGAGGTACCATGTGATGCAGGCAGCAAAAACTCTGGTGAACAAAGGGTATGACCCTGA 1027
Query 1064 GGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCT-CTACACAATTGGAAACTCGGTGA 1122
|||||||||||| ||||| |||| || || || || | ||||||| |||||||| || |
Sbjct 1028 GGTTATCGACATCAGGTCACTGAAACCCTTCGACCTTC-ACACAATCGGAAACTCAGTAA 1086
Query 1123 AGAAGACACACCGGGTTTTGATTGTGGAGGAATGTATGAGAACGGGAGGAATCGGAGCCA 1182
|||| ||||||||||||||||| |||||||| ||||||||||| || || || || || |
Sbjct 1087 AGAAAACACACCGGGTTTTGATCGTGGAGGAGTGTATGAGAACTGGTGGGATTGGGGCAA 1146
Query 1183 GT-TTGACGGCTGCAATAAACGAGAACTTTCATGATTACTTAGATGCTCCGGTGATGTGT 1241
|| || || ||||| || ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1147 GTCTT-ACAGCTGCCATCAACGAGAACTTCCATGACTACTTAGATTCTCCGGTGATGTGC 1205
Query 1242 TTGTCTTCTCAGGATGTCCCAACTCCTTACGCCGGTACATTGGAAGAATGGACGGTTGTT 1301
|| |||||||| || || || || || ||||| |||||| |||| || ||||| || |||
Sbjct 1206 TTATCTTCTCAAGACGTTCCTACACCATACGCTGGTACACTGGAGGAGTGGACAGTGGTT 1265
Query 1302 CAGCCAGCTCAGATCGTCACTGCCGTCGAACAACTTTGCCAGTAA 1346
|| || ||||||||||| || || ||||| || ||||||||||||
Sbjct 1266 CAACCGGCTCAGATCGTGACCGCTGTCGAGCAGCTTTGCCAGTAA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5