BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34600.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333262 jgi|Araly1|333262|fgenesh1_pm.C_scaffold_270000001 549 9e-156
Ahg482423 jgi|Araly1|482423|fgenesh2_kg.4__1483__AT2G34600.1 435 3e-121
> Ahg333262 jgi|Araly1|333262|fgenesh1_pm.C_scaffold_270000001
Length=393
Score = 549 bits (297), Expect = 9e-156
Identities = 356/384 (93%), Gaps = 5/384 (1%)
Strand=Plus/Plus
Query 144 ATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCTTCTTATGATTCT 203
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1 ATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCTTCATATGCTTCT 60
Query 204 ---GATTTCCATAGCTCGTTGGACGAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAA 260
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGATTTCCATAGCTCGGTGGACAAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAT 120
Query 261 GAATCTCAGATATTAACCATTTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACC 320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAATCTCAGATATTAACCATCTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACC 180
Query 321 CATCTTGAGGCTAACGCTATACTATCGCTAGCGAGTAGAGATGTGGAAGAGAAATCTTTA 380
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 181 CACCTTGAGGCTAAAGCTATACTATCGCTAGCGAGTAGAGATGTGGAAGAGAGATCGTTA 240
Query 381 TCCTTGAGAAGTTCAGACGGTTCGGATCCTCCAACAATCCCAAACA-ATTCGACTCGATT 439
|| |||| ||| ||||||| |||||| ||||||||| ||||||| | ||||||| |||||
Sbjct 241 TCGTTGAAAAGCTCAGACGATTCGGAACCTCCAACACTCCCAAA-ATATTCGACCCGATT 299
Query 440 TCATTATCAAAAGGCCTCTATGAAGAGATCTCTTCACAGTTTTCTTCAGAAACGAAGTCT 499
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 300 TCATAATCAAAAGGTCTCTATGAAGAGATCTCTTCGGAGTTTTCTTCAGAAACGAAATGT 359
Query 500 TCGGATTCAAGCAACTTCCCCTTA 523
||||||||||||||||||||||||
Sbjct 360 TCGGATTCAAGCAACTTCCCCTTA 383
> Ahg482423 jgi|Araly1|482423|fgenesh2_kg.4__1483__AT2G34600.1
Length=519
Score = 435 bits (235), Expect = 3e-121
Identities = 282/305 (92%), Gaps = 2/305 (1%)
Strand=Plus/Plus
Query 220 TGGACGAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAAGAATCTCAGATATTAACCA 279
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 173 TGGACAAATCAAGCAGCTCTGAAATTTCACAACCAAAGCATGAATCTCAGATATTAACCA 232
Query 280 TTTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACCCATCTTGAGGCTAACGCTA 339
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 233 TCTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACCCACCTTGAGGCTAAAGCTA 292
Query 340 TACTATCGCTAGCGAGTAGAGATGTGGAAGAGAAATCTTTATCCTTGAGAAGTTCAGACG 399
||||||||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||||
Sbjct 293 TACTATCGCTAGCGAGTAGAGATGTGGAAGAGAGATCGTTATCGTTGAAAAGCTCAGACG 352
Query 400 GTTCGGATCCTCCAACAATCCCAAACA-ATTCGACTCGATTTCATTATCAAAAGGCCTCT 458
|||||| ||||||||| ||||||| | ||||| | ||||||||| ||||||||| ||||
Sbjct 353 ATTCGGAACCTCCAACACTCCCAAA-ATATTCGCCCCGATTTCATAATCAAAAGGTCTCT 411
Query 459 ATGAAGAGATCTCTTCACAGTTTTCTTCAGAAACGAAGTCTTCGGATTCAAGCAACTTCC 518
|||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 412 ATGAAGAGATCTCTTCGGAGTTTTCTTCAGAAACGAAATGTTCGGATTCAAGCAACTTCC 471
Query 519 CCTTA 523
|||||
Sbjct 472 CCTTA 476
Score = 143 bits (77), Expect = 2e-33
Identities = 129/151 (85%), Gaps = 15/151 (10%)
Strand=Plus/Plus
Query 77 ACTGACACATACAATCATGATCATCATCATCAAAAACTGCGACAAGC--CTTTACTCA-A 133
|||||||| |||||| ||||||||||||||||||| | |||||| |||||||| |
Sbjct 1 ACTGACAC--ACAATC---ATCATCATCATCAAAAACTAC-ACAAGCATATTTACTCACA 54
Query 134 TTTCAA-AGA-GATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCT 191
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ACT-AAGAGATCATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCT 113
Query 192 TCTTATGATTCT---GATTTCCATAGCTCGT 219
|| |||| |||| ||||||||||||||||
Sbjct 114 TCATATGCTTCTTCTGATTTCCATAGCTCGT 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5