BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34610.1 Length=1126 Score E Sequences producing significant alignments: (Bits) Value Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1 1424 0.0 Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1 1397 0.0 > Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1 Length=1079 Score = 1424 bits (771), Expect = 0.0 Identities = 996/1098 (91%), Gaps = 41/1098 (4%) Strand=Plus/Plus Query 19 CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG 78 |||||||| |||| || ||||||||||||||||||| |||| |||||||||||||||||| Sbjct 11 CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG 69 Query 79 ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG-- 135 |||||||||||||||||||||| | |||| ||| | ||||||||||||||||||||| Sbjct 70 ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA 128 Query 136 A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 194 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 188 Query 195 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 248 Query 255 GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA 314 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 249 GTTTGTCATCTCCAACGCACTTATCATCATCATAGCCGCCGATTACGGAGCATTCACTGA 308 Query 315 CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG 373 |||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| || Sbjct 309 TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG 367 Query 374 AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC 432 ||||||||||||||||||| | || ||| ||||| | |||||||||||||| ||||||| Sbjct 368 AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC 426 Query 433 CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC 492 |||||||||||||||| || | ||||| |||||||||||| |||||||||||||||| Sbjct 427 CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTGCCTAAC 486 Query 493 AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC 552 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 487 AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC 546 Query 553 A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA 610 | || | || |||||| | |||||| |||||||| |||| ||| ||||| |||||| | Sbjct 547 ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA 604 Query 611 AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT 670 ||||||||||||||| | || | ||| | ||| | | |||||| ||||||||| Sbjct 605 AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT 649 Query 671 CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA 730 |||||||||||||||||||| || || |||||||| | ||||||||||| |||||||||| Sbjct 650 CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA 709 Query 731 GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 790 ||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 710 GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 769 Query 791 GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA 848 || | |||||||| | | |||||||| | |||||||||||||||||||||||||| ||| Sbjct 770 TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA 824 Query 849 AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT 908 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 825 AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT 884 Query 909 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 944 Query 969 TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT 1027 |||| ||||||||||||||||||||||||||||||| |||||||| || || || |||| Sbjct 945 TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTC--TTCTTCTT-TTTT 1001 Query 1028 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT 1086 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1002 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT 1061 Query 1087 AGTTTAATTTCAAGGGTT 1104 ||||||||||||| |||| Sbjct 1062 AGTTTAATTTCAATGGTT 1079 > Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1 Length=1079 Score = 1397 bits (756), Expect = 0.0 Identities = 991/1098 (90%), Gaps = 41/1098 (4%) Strand=Plus/Plus Query 19 CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG 78 |||||||| |||| || ||||||||||||||||||| |||| |||||||||||||||||| Sbjct 11 CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG 69 Query 79 ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG-- 135 |||||||||||||||||||||| | |||| ||| | ||||||||||||||||||||| Sbjct 70 ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA 128 Query 136 A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 194 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 188 Query 195 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 254 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| Sbjct 189 TTTGATCTTCCACGTTCTCGACGTCTCTCCTTGGTCGATCTTCAACGACACGAAGGTCTT 248 Query 255 GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA 314 ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 249 GTTCGTCATCTCCAACGCACTTATCATCATCATAGCAGCCGATTACGGAGCATTCACTGA 308 Query 315 CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG 373 |||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| || Sbjct 309 TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG 367 Query 374 AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC 432 ||||||||||||||||||| | || ||| ||||| | |||||||||||||| ||||||| Sbjct 368 AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC 426 Query 433 CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC 492 |||||||||||||||| || | ||||| |||||||||||| ||||||||| |||||| Sbjct 427 CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTACCTAAC 486 Query 493 AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC 552 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 487 AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC 546 Query 553 A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA 610 | || | || |||||| | |||||| |||||||| |||| ||| ||||| |||||| | Sbjct 547 ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA 604 Query 611 AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT 670 ||||||||||||||| | || | ||| | ||| | | |||||| ||||||||| Sbjct 605 AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT 649 Query 671 CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA 730 |||||||||||||||||||| || || |||||||| | ||||||||||| |||||||||| Sbjct 650 CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA 709 Query 731 GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 790 ||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 710 GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 769 Query 791 GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA 848 || | |||||||| | | |||||||| | |||||||||||||||||||||||||| ||| Sbjct 770 TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA 824 Query 849 AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT 908 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 825 AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT 884 Query 909 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 968 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 944 Query 969 TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT 1027 |||| ||||||||||||||||||||||||||||||| ||||||| || || || |||| Sbjct 945 TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTG--TTCTTCTT-TTTT 1001 Query 1028 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT 1086 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1002 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT 1061 Query 1087 AGTTTAATTTCAAGGGTT 1104 ||||||||||||| |||| Sbjct 1062 AGTTTAATTTCAATGGTT 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41973331617 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5