BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G34610.1

Length=1126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1        1424    0.0  
  Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1         1397    0.0  


> Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1
Length=1079

 Score = 1424 bits (771),  Expect = 0.0
 Identities = 996/1098 (91%), Gaps = 41/1098 (4%)
 Strand=Plus/Plus

Query  19    CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG  78
             |||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  11    CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG  69

Query  79    ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG--  135
             |||||||||||||||||||||| | |||| |||  | |||||||||||||||||||||  
Sbjct  70    ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA  128

Query  136   A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT  194
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129   ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT  188

Query  195   TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT  254
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  189   TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT  248

Query  255   GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA  314
             ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  249   GTTTGTCATCTCCAACGCACTTATCATCATCATAGCCGCCGATTACGGAGCATTCACTGA  308

Query  315   CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG  373
              |||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| ||
Sbjct  309   TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG  367

Query  374   AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC  432
             ||||||||||||||||||| | ||  ||| ||||| | |||||||||||||| |||||||
Sbjct  368   AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC  426

Query  433   CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC  492
             |||||||||||||||| || |  |||||  ||||||||||||  ||||||||||||||||
Sbjct  427   CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTGCCTAAC  486

Query  493   AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC  552
             ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  487   AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC  546

Query  553   A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA  610
             | || | ||  |||||| | |||||| |||||||| ||||  ||| ||||| |||||| |
Sbjct  547   ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA  604

Query  611   AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT  670
             |||||||||||||||  | || |  ||| |  ||| |    |  |||||| |||||||||
Sbjct  605   AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT  649

Query  671   CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA  730
             |||||||||||||||||||| || || |||||||| | ||||||||||| ||||||||||
Sbjct  650   CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA  709

Query  731   GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG  790
             ||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct  710   GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG  769

Query  791   GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA  848
              || | |||||||| | | |||||||| | |||||||||||||||||||||||||| |||
Sbjct  770   TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA  824

Query  849   AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT  908
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  825   AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT  884

Query  909   CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG  968
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  885   CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG  944

Query  969   TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT  1027
             |||| ||||||||||||||||||||||||||||||| ||||||||  || || || ||||
Sbjct  945   TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTC--TTCTTCTT-TTTT  1001

Query  1028  GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT  1086
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1002  GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT  1061

Query  1087  AGTTTAATTTCAAGGGTT  1104
             ||||||||||||| ||||
Sbjct  1062  AGTTTAATTTCAATGGTT  1079


> Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1
Length=1079

 Score = 1397 bits (756),  Expect = 0.0
 Identities = 991/1098 (90%), Gaps = 41/1098 (4%)
 Strand=Plus/Plus

Query  19    CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG  78
             |||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  11    CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG  69

Query  79    ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG--  135
             |||||||||||||||||||||| | |||| |||  | |||||||||||||||||||||  
Sbjct  70    ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA  128

Query  136   A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT  194
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129   ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT  188

Query  195   TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT  254
             |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct  189   TTTGATCTTCCACGTTCTCGACGTCTCTCCTTGGTCGATCTTCAACGACACGAAGGTCTT  248

Query  255   GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA  314
             ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct  249   GTTCGTCATCTCCAACGCACTTATCATCATCATAGCAGCCGATTACGGAGCATTCACTGA  308

Query  315   CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG  373
              |||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| ||
Sbjct  309   TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG  367

Query  374   AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC  432
             ||||||||||||||||||| | ||  ||| ||||| | |||||||||||||| |||||||
Sbjct  368   AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC  426

Query  433   CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC  492
             |||||||||||||||| || |  |||||  ||||||||||||  ||||||||| ||||||
Sbjct  427   CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTACCTAAC  486

Query  493   AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC  552
             ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  487   AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC  546

Query  553   A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA  610
             | || | ||  |||||| | |||||| |||||||| ||||  ||| ||||| |||||| |
Sbjct  547   ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA  604

Query  611   AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT  670
             |||||||||||||||  | || |  ||| |  ||| |    |  |||||| |||||||||
Sbjct  605   AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT  649

Query  671   CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA  730
             |||||||||||||||||||| || || |||||||| | ||||||||||| ||||||||||
Sbjct  650   CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA  709

Query  731   GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG  790
             ||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct  710   GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG  769

Query  791   GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA  848
              || | |||||||| | | |||||||| | |||||||||||||||||||||||||| |||
Sbjct  770   TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA  824

Query  849   AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT  908
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  825   AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT  884

Query  909   CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG  968
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  885   CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG  944

Query  969   TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT  1027
             |||| ||||||||||||||||||||||||||||||| |||||||   || || || ||||
Sbjct  945   TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTG--TTCTTCTT-TTTT  1001

Query  1028  GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT  1086
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1002  GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT  1061

Query  1087  AGTTTAATTTCAAGGGTT  1104
             ||||||||||||| ||||
Sbjct  1062  AGTTTAATTTCAATGGTT  1079



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41973331617


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5