BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34610.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1 1424 0.0
Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1 1397 0.0
> Ahg482424 jgi|Araly1|482424|fgenesh2_kg.4__1484__AT2G34610.1
Length=1079
Score = 1424 bits (771), Expect = 0.0
Identities = 996/1098 (91%), Gaps = 41/1098 (4%)
Strand=Plus/Plus
Query 19 CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG 78
|||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 11 CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG 69
Query 79 ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG-- 135
|||||||||||||||||||||| | |||| ||| | |||||||||||||||||||||
Sbjct 70 ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA 128
Query 136 A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 188
Query 195 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 248
Query 255 GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA 314
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 249 GTTTGTCATCTCCAACGCACTTATCATCATCATAGCCGCCGATTACGGAGCATTCACTGA 308
Query 315 CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG 373
|||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| ||
Sbjct 309 TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG 367
Query 374 AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC 432
||||||||||||||||||| | || ||| ||||| | |||||||||||||| |||||||
Sbjct 368 AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC 426
Query 433 CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC 492
|||||||||||||||| || | ||||| |||||||||||| ||||||||||||||||
Sbjct 427 CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTGCCTAAC 486
Query 493 AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC 552
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 487 AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC 546
Query 553 A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA 610
| || | || |||||| | |||||| |||||||| |||| ||| ||||| |||||| |
Sbjct 547 ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA 604
Query 611 AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT 670
||||||||||||||| | || | ||| | ||| | | |||||| |||||||||
Sbjct 605 AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT 649
Query 671 CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA 730
|||||||||||||||||||| || || |||||||| | ||||||||||| ||||||||||
Sbjct 650 CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA 709
Query 731 GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 790
||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 710 GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 769
Query 791 GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA 848
|| | |||||||| | | |||||||| | |||||||||||||||||||||||||| |||
Sbjct 770 TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA 824
Query 849 AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT 908
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT 884
Query 909 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 944
Query 969 TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT 1027
|||| ||||||||||||||||||||||||||||||| |||||||| || || || ||||
Sbjct 945 TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTC--TTCTTCTT-TTTT 1001
Query 1028 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT 1086
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1002 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT 1061
Query 1087 AGTTTAATTTCAAGGGTT 1104
||||||||||||| ||||
Sbjct 1062 AGTTTAATTTCAATGGTT 1079
> Ahg497369 jgi|Araly1|497369|fgenesh2_kg.270__2__AT2G34610.1
Length=1079
Score = 1397 bits (756), Expect = 0.0
Identities = 991/1098 (90%), Gaps = 41/1098 (4%)
Strand=Plus/Plus
Query 19 CCTCAAGGTTCAATTTTTCAAATCCAATGCCCAACTTATCAGGAGCTATCCCTGAAAATG 78
|||||||| |||| || ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 11 CCTCAAGGCTCAA-TTCTCAAATCCAATGCCCAACTCATCACGAGCTATCCCTGAAAATG 69
Query 79 ACAGAAATGCCCTCGTACGTTG-TCGAAACCCCCCTCTTCGAGCCTTACAAGCCCAAG-- 135
|||||||||||||||||||||| | |||| ||| | |||||||||||||||||||||
Sbjct 70 ACAGAAATGCCCTCGTACGTTGTTGGAAA-CCCTATTTTCGAGCCTTACAAGCCCAAGAA 128
Query 136 A-AACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ACAACAATACAAATTGTACTCTTCGTTGCTCCCGATCATCTTATCTATCTTCACCTACAT 188
Query 195 TTTGATCTTCCACGTTCTCGACGTGTCTCCTTTGTCGATCTTCAACGACACGAAGATCTT 254
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 189 TTTGATCTTCCACGTTCTCGACGTCTCTCCTTGGTCGATCTTCAACGACACGAAGGTCTT 248
Query 255 GTTCGTCATCTCCAACGCACTTATCATCATCATTGCCGCCGATTACGGTGCATTCACTGA 314
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 249 GTTCGTCATCTCCAACGCACTTATCATCATCATAGCAGCCGATTACGGAGCATTCACTGA 308
Query 315 CAAAGAGAACCTCGATTTTTACGGAGAATACACAGCCGCGATGAGAAG-GGATGCACAAG 373
|||||||||| ||||||||||||||||||||||||| |||||| ||| || ||||| ||
Sbjct 309 TAAAGAGAACCACGATTTTTACGGAGAATACACAGCCTCGATGACAAGAGG-TGCACGAG 367
Query 374 AAAACCCTAGACCGGAAAAGTCGGTCTATGGGGTG-AGTATGGCGGAAGAAACCAAGAAC 432
||||||||||||||||||| | || ||| ||||| | |||||||||||||| |||||||
Sbjct 368 AAAACCCTAGACCGGAAAACTTGGGATATCGGGTGGA-TATGGCGGAAGAAATCAAGAAC 426
Query 433 CGTGAGAAACAAGAAGGACCAGTGGGAGCGAGAGACTTACAAGATCAGTATTTGCCTAAC 492
|||||||||||||||| || | ||||| |||||||||||| ||||||||| ||||||
Sbjct 427 CGTGAGAAACAAGAAGAACTAACGGGAGAAAGAGACTTACAACTTCAGTATTTACCTAAC 486
Query 493 AAGAAAGCGAAAGTTACTGAGAGAATCATACAAGCCGTGAGCAAGAACCAACCGAGAAAC 552
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 487 AAGAAAGCGAAAGTTCCTGAGAGAATCATTCAAGCCGTGAGCAAGAACCAACCGAGAAAC 546
Query 553 A-AAGCCATTGAAAAGTGT-GAGCCAGTGACTGAGCAAAATGTTCATATAATAGCTGCAA 610
| || | || |||||| | |||||| |||||||| |||| ||| ||||| |||||| |
Sbjct 547 ACAA-CTATCCAAAAGT-TCGAGCCAATGACTGAGAAAAACATTCCTATAAAAGCTGCCA 604
Query 611 AAGAAGAAACTTGCAACGCAAGCAATCTGATGAACTCTAAAGCCTACGGGCGAAGCAAAT 670
||||||||||||||| | || | ||| | ||| | | |||||| |||||||||
Sbjct 605 AAGAAGAAACTTGCAT-G-AA-C--TCT-A--AAC-C----G--TACGGGAGAAGCAAAT 649
Query 671 CGGATAAGGCTCGTGGGTCAGTGATATCCAAGGAACGTCGTCGTCAAGAGATCAAACATA 730
|||||||||||||||||||| || || |||||||| | ||||||||||| ||||||||||
Sbjct 650 CGGATAAGGCTCGTGGGTCAATGGTAACCAAGGAAAGCCGTCGTCAAGACATCAAACATA 709
Query 731 GACATAAAAGTTACGATCGGAGTCAATCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 790
||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 710 GACCTAAAAGTTACGATCGAAGCCAGTCGGATAGCTCGAAATGGATGGTTGTTCACAAGG 769
Query 791 GGA-AGAAGGCTGACGAGGAGATGGAGGA-GGCGACGAAGAAGTGGGAGAATGTAAAAGA 848
|| | |||||||| | | |||||||| | |||||||||||||||||||||||||| |||
Sbjct 770 TGACA-AAGGCTGA-G-G-AGATGGAG-ATGGCGACGAAGAAGTGGGAGAATGTAAGAGA 824
Query 849 AGAGTCGGAGGAGTTCTCGAAGATGTCGAACGAGGAGTTGAACAGACGAGTCGAAGATTT 908
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 AGAGTCGGAGGAGTTCTCGAAGATGTCAAACGAGGAGTTGAACAGACGAGTCGAAGATTT 884
Query 909 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CATCCAACGGTTCAATCGAGATATCAAACGACAAATTTAGTTTAATGTAATTTGTTGTTG 944
Query 969 TACCAATACGGCAAATTTAGTCAACCTTTTTGTGTCGTTTCCTTCCCttttt-ttCTTTT 1027
|||| ||||||||||||||||||||||||||||||| ||||||| || || || ||||
Sbjct 945 TACCGATACGGCAAATTTAGTCAACCTTTTTGTGTCATTTCCTTG--TTCTTCTT-TTTT 1001
Query 1028 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATA-TTAATCGTT 1086
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1002 GTCATTCTTGCATCTTGTTTATTAGAGTTGGTAATGAGATCATGGAGATAATTAATCGTT 1061
Query 1087 AGTTTAATTTCAAGGGTT 1104
||||||||||||| ||||
Sbjct 1062 AGTTTAATTTCAATGGTT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5