BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34620.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497370 jgi|Araly1|497370|fgenesh2_kg.270__3__AT2G34620.1 1511 0.0
Ahg482425 jgi|Araly1|482425|fgenesh2_kg.4__1485__AT2G34620.1 1485 0.0
> Ahg497370 jgi|Araly1|497370|fgenesh2_kg.270__3__AT2G34620.1
Length=997
Score = 1511 bits (818), Expect = 0.0
Identities = 929/983 (95%), Gaps = 6/983 (1%)
Strand=Plus/Plus
Query 1 GGCCACATCATCTCTTTCCACCATGTCTGCAGCATTGAGCTCGTCTCTCTACATTTCCCC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1 GGCCACATCATCTCTTTCCACCATGTCTGCAGCACTGAGCTCGTCTCTCTACATTTCACC 60
Query 61 AAAGAAACCTTCATGTCCACAACAATCTCAATCCACATTCTTATCCACGAAACCAACCAC 120
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 61 AAAGAAACCATCATGTCCACAACAATCTCAATCCACAATCTTATCCACGAAACCCACGTC 120
Query 121 CATCAAAACCAATCTCCATAGCCATCCTCTCTTCACTGTAGCTGATCAGACAGTAACCCT 180
||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 121 CATCAAAACCACTCTACATAGCCACCCTCTCTTCTCTGTAGCCGATCAGACAGTAACCCT 180
Query 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTAATGGGAATTGACTCAGGAAAAGCCCT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTCATGGGAATTGACTCAGGCAAAGCCCT 240
Query 241 TTCTCTCAACCCATGTCTCTGCTCAGCCCCCCTTGACTCCATCCAATCCGTCCTCCATTT 300
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 241 CTCTCTCAACCCATGTCTCTGCTCAGCCTCCCTTGACTCCATCGAATCCGTCCTCCATTT 300
Query 301 CCTTCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
Query 361 GATCCTCACTTCCGACGTCAGAACAGAACTGTACCCTGTTTTCATGTTCCTGTCGAATGA 420
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 361 GATCCTCACTTCCGACGTCAGAACAGAACTCCACCCTGTCTTCATGTTCCTGTCGAATGA 420
Query 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTCCTTAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTTCTGAT 480
Query 481 TAGCAGTGTAGAAGACCAGCTCAAACCTGCTCTCTTCTACTTGCAGAGACTTGGTCTCAA 540
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 481 TAGCAGTGTAGAAGACCAGCTCAAGCCTGCTCTTTTCTACTTGCAGAGACTTGGTTTCAA 540
Query 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTGTTGGTGTCTAGTGTTGAACACAC 600
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTACTGGTGTCTAGTGTTGAACACAC 600
Query 601 TCTCATCCCAAAGCTTAGATTCTTGGAGAGTATAGGGTTCTCAAGACCAGAAGCGATTGG 660
|||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 601 TCTCATCCCAAAACTTAGATTCTTGGAGAGTATAGGGTACTCGAGAGCAGAAGCGATTGG 660
Query 661 AATGATCCTAAGATGTCCAGCAT-TATTCACATTCAGCATAGAGAACAACTTCAAACCAA 719
|||||| || ||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 661 AATGATACTTAGATGTCCAGC-TCTATTCACATTCAGCATAGAGAACAATTTCAAACCAA 719
Query 720 AACTGGATTACTTCATGAGTGAGATCAAAGGAAAACTAGAGAATCTAAAGGAGTTTCCAC 779
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 AACTGGATTACTTCATGAGTGGGATCAAAGGAAAACTGGAGAATCTAAAGGAGTTTCCAC 779
Query 780 AGTATTTTGCCTTCAGTCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAATGGAGA 839
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 AGTATTTTGCCTTCAGCCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAAAAGAGA 839
Query 840 GAGGATTAGAGTTGCCACTGTCATTGATGCTTAAGAGCACTGATGAAGAGTTCGAGCAGT 899
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 840 GAGGTTTAGAGTTGCCATTGTCATTGATGCTTAAGAGCACTGATGAAGAATTCGAGCAAT 899
Query 900 TGCTCACAAACCCCTCTTCAGTGGCAAACGTG-TAACATTTATTGTATA-GTGGTGAATG 957
|||||||||| |||||||||| ||||||| | |||||||||||||||| |||| |||||
Sbjct 900 TGCTCACAAAGGCCTCTTCAGTTGCAAACG-GATAACATTTATTGTATATGTGG-GAATG 957
Query 958 TTATTGATTGTGTTCATAGCTTT 980
||| |||||||||||||||||||
Sbjct 958 TTAATGATTGTGTTCATAGCTTT 980
> Ahg482425 jgi|Araly1|482425|fgenesh2_kg.4__1485__AT2G34620.1
Length=982
Score = 1485 bits (804), Expect = 0.0
Identities = 925/984 (94%), Gaps = 6/984 (1%)
Strand=Plus/Plus
Query 1 GGCCACATCATCTCTTTCCACCATGTCTGCAGCATTGAGCTCGTCTCTCTACATTTCCCC 60
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GGCCACACCATCTCTCTCCACCATGTCTGCAGCATTGAGCTCGTCTCTCTACATTTCACC 60
Query 61 AAAGAAACCTTCATGTCCACAACAATCTCAATCCACATTCTTATCCACGAAACCAACCAC 120
||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||| || |
Sbjct 61 AAAGAAACCGTCATGCCCACAACAATCTCAACCCACAATCTTATCCACGAAACCCACGTC 120
Query 121 CATCAAAACCAATCTCCATAGCCATCCTCTCTTCACTGTAGCTGATCAGACAGTAACCCT 180
||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 121 CATCAAAACCACTCTACATAGCCACCCTCTCTTCTCTGTAGCCGATCAGACAGTAACCCT 180
Query 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTAATGGGAATTGACTCAGGAAAAGCCCT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 181 CCAGATGAAAGAGAAGATCCTCTGTCTCGAGCTCATGGGAATTGACTCAGGCAAAGCCCT 240
Query 241 TTCTCTCAACCCATGTCTCTGCTCAGCCCCCCTTGACTCCATCCAATCCGTCCTCCATTT 300
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 241 CTCTCTCAACCCATGTCTCTGCTCAGCCTCCCTTGACTCCATCGAATCCGTCCTCCATTT 300
Query 301 CCTTCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCCAATCAAAAGGAATCTACCCAAATGACCTCCCAAGAATCTTGGGGATGTGTCCTAA 360
Query 361 GATCCTCACTTCCGACGTCAGAACAGAACTGTACCCTGTTTTCATGTTCCTGTCGAATGA 420
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 361 GATCCTCACTTCCGACGTCAGAACAGAACTCCACCCTGTCTTCATGTTCCTGTCGAATGA 420
Query 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTCCTTAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 TCTCCATGTCCCTGAGAATGCGTTCAGAAGAGTGATCAAGAAATGTCCAAGGCTTCTGAT 480
Query 481 TAGCAGTGTAGAAGACCAGCTCAAACCTGCTCTCTTCTACTTGCAGAGACTTGGTCTCAA 540
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 481 TAGCAGTGTAGAAGACCAGCTCAAGCCTGCTCTTTTCTACTTGCAGAGACTTGGTTTCAA 540
Query 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTGTTGGTGTCTAGTGTTGAACACAC 600
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 GGATCTTGAAGCTCTTGCTTACCAAGATCCTATCTTACTGGTGTCTAGTGTTGAACACAC 600
Query 601 TCTCATCCCAAAGCTTAGATTCTTGGAGAGTATAGGGTTCTCAAGACCAGAAGCGATTGG 660
|||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct 601 TCTCATCCCAAAACTTAGATTCTTGGAGAGTATAGGGTACTCGAGAGCAGAAGCGATTGG 660
Query 661 AATGATCCTAAGATGTCCAGCAT-TATTCACATTCAGCATAGAGAACAACTTCAAACCAA 719
|||||| || ||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 661 AATGATACTTAGATGTCCAGC-TCTATTCACATTCAGCATAGAGAACAATTTCAAACCAA 719
Query 720 AACTGGATTACTTCATGAGTGAGATCAAAGGAAAACTAGAGAATCTAAAGGAGTTTCCAC 779
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 AACTGGATTACTTCATGAGTGGGATCAAAGGAAAACTGGAGAATCTAAAGGAGTTTCCAC 779
Query 780 AGTATTTTGCCTTCAGTCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAATGGAGA 839
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 AGTATTTTGCCTTCAGCCTAGAGAAAAGGATAAAGCCAAGACACTTAGAATCAAAAGAGA 839
Query 840 GAGGATTAGAGTTGCCACTGTCATTGATGCTTAAGAGCACTGATGAAGAGTTCGAGCAGT 899
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 840 GAGGTTTAGAGTTGCCATTGTCATTGATGCTTAAGAGCACTGATGAAGAATTCGAGCAAT 899
Query 900 TGCTCACAAACCCCTCTTCAGTGGCAAACGTG-TAACATTTATTGTATA-GTGGT-GAAT 956
|||||||||| |||||||||| ||||||| | |||||||||||||||| |||| ||||
Sbjct 900 TGCTCACAAAGGCCTCTTCAGTTGCAAACG-GATAACATTTATTGTATATGTGGGAGAAT 958
Query 957 GTTATTGATTGTGTTCATAGCTTT 980
|||| |||| ||||||||||||||
Sbjct 959 GTTAATGATCGTGTTCATAGCTTT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5