BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34630.2
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934063 jgi|Araly1|934063|scaffold_402051.1 2109 0.0
> Ahg934063 jgi|Araly1|934063|scaffold_402051.1
Length=1309
Score = 2109 bits (1142), Expect = 0.0
Identities = 1247/1299 (96%), Gaps = 2/1299 (0%)
Strand=Plus/Plus
Query 141 ATTTAGAAAATGTTATTCACGAGGAGTGTTGCTCGGATTTCTTCTAAGTTTCTGAGAAAC 200
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 12 ATTTAGAAAATGTTATTCTCGAGGAGTGTTGCTCGTATTTCTTCTAAGTTTCTGAGAAAC 71
Query 201 CGTAGCTTCTATGGCTCCTCTCAATCTCTCGCCTCTCATCGGTTCGCAATCATTCCCGAT 260
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 72 CGTAGCTTCTATGGCTGCTCTCAATCTCTCGCCTCTCACCGCTTCGCAATCATTCCCGAT 131
Query 261 CAGGGTCACTCTTGTTCTGACTCTC-CACACAAGGGTTACGTTTGCAGAACAACTTATTC 319
||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 132 CAGGGTCACTCTTGTTCTGACTC-CACACACAAGGGTTACGTTTGCAGAACAACATATTC 190
Query 320 ATTGAAATCTCCGGTTTTTGGTGGATTTAGTCATCAACTCTATCACCAGAGTAGCTCCTT 379
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 191 ATTGAAATCTCCCCTTTTTGGTGGATTTAGTCATCAACTCTATCACCAGAGCAGCTCCTT 250
Query 380 GGTTGAGGAGGAGCTTGACCCATTTTCGCTTGTTGCCGATGAGCTGTCACTTCTTAGTAA 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AGTTGAGGAGGAGCTTGACCCATTTTCGCTTGTTGCCGATGAGCTGTCACTTCTTAGTAA 310
Query 440 TAAGTTGAGAGAGATGGTACTTGCCGAGGTTCCAAAGCTTGCCTCTGCTGCTGAGTACTT 499
||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||
Sbjct 311 TAAGTTGAGAGAGATGGTAGTTGCCGAGGTTCCGAAGCTTGCCTCTGCAGCCGAGTACTT 370
Query 500 CTTCAAAAGGGGTGTGCAAGGAAAACAGTTTCGTTCAACTATTTTGCTGCTGATGGCGAC 559
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 371 CTTCAAAAGGGGTGTGCAAGGAAAACAGTTTCGTTCAACTGTTTTGCTGTTGATGGCGAC 430
Query 560 AGCTCTGAATGTACGAGTTCCAGAAGCATTGATTGGGGAATCAACAGATATAGTCACATC 619
|||||||||| |||| || ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 431 AGCTCTGAATTTACGCGTACCAGAAGCATTGATTGGCGAATCAACAGATATAGTCTCATC 490
Query 620 AGAATTACGCGTAAGGCAACGGGGTATTGCTGAAATCACTGAAATGATACACGTCGCAAG 679
||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 491 AGAGTTACGAGTAAGGCAACGGGGTATTGCTGAAATCACTGAAATGATACATGTTGCAAG 550
Query 680 TCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAA 739
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 551 TCTCCTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGGGGTGTTGGTTCCTTAAA 610
Query 740 TGTTGTAATGGGTAACAAGATGTCGGTATTAGCAGGAGACTTCTTGCTCTCCCGGGCTTG 799
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 611 TGTCGTAATGGGTAACAAGATGTCGGTATTAGCAGGAGACTTCTTGCTGTCCCGGGCTTG 670
Query 800 TGGGGCTCTCGCTGCTTTAAAGAACACAGAGGTTGTAGCATTACTTGCAACTGCTGTAGA 859
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGGGGCTCTCGCTGCCTTAAAGAACACAGAGGTTGTAGCATTACTTGCAACTGCTGTAGA 730
Query 860 ACATCTTGTTACCGGTGAAACCATGGAGATAACTAGTTCAACCGAGCAGCGTTATAGTAT 919
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 731 ACATCTTGTTACTGGTGAAACCATGGAAATAACTAGTACAACCGAGCAGCGTTATAGTAT 790
Query 920 GGACTACTACATGCAGAAGACATATTATAAGACAGCATCGCTAATCTCTAACAGCTGCAA 979
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 791 GGACTACTACATGCAAAAGACATATTATAAGACAGCATCACTAATTTCTAACAGCTGCAA 850
Query 980 AGCTGTTGCCGTTCTCACTGGACAAACAGCAGAAGTTGCCGTGTTAGCTTTTGAGTATGG 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AGCGGTTGCCGTTCTCACTGGACAAACAGCAGAAGTTGCCGTGTTAGCTTTTGAGTATGG 910
Query 1040 GAGGAATCTGGGTTTAGCATTCCAATTAATAGACGACATTCTTGATTTCACGGGCACATC 1099
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 911 GAAGAATCTGGGTTTAGCATTCCAATTGATTGACGACATTCTTGATTTCACGGGCACATC 970
Query 1100 TGCCTCTCTCGGAAAGGGATCGTTGTCAGATATTCGCCATGGAGTCATAACAGCCCCAAT 1159
||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 971 TGCCTCTCTCGGAAAGGGATCTTTATCAGATATCCGCCATGGAGTCATAACAGCTCCAAT 1030
Query 1160 CCTCTTTGCCATGGAAGAGTTTCCTCAACTACGCGAAGTTGTTGATCAAGTTGAAAAAGA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CCTCTTTGCCATGGAAGAGTTTCCTCAACTACGCGAAGTTGTTGATCAAGTTGAAAAAGA 1090
Query 1220 TCCTAGGAATGTTGACATTGCTTTAGAGTATCTTGGGAAGAGCAAGGGAATACAGAGGGC 1279
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TCCAAGGAATGTTGACATTGCTTTAGAGTATCTTGGGAAGAGCAAGGGAATACAGAGGGC 1150
Query 1280 AAGAGAATTAGCCATGGAACATGCGAATCTAGCAGCAGCTGCAATCGGGTCTCTACCTGA 1339
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1151 AAGAGAATTAGCCATGGAACATGCTAATCTCGCAGCAGCTGCAATAGGGTCTCTACCTGA 1210
Query 1340 AACAGACAATGAAGATGTCAAAAGATCGAGGCGGGCACTTATTGACTTGACCCATAGAGT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AACAGACAATGAAGATGTCAAAAGATCGAGGCGGGCACTTATTGACTTGACCCATAGAGT 1270
Query 1400 CATCACCAGAAACAAGTGAGATTAAGTAATGTTTCTCTC 1438
| |||||||||||||||||||||||| ||||||||||||
Sbjct 1271 CCTCACCAGAAACAAGTGAGATTAAGAAATGTTTCTCTC 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5