BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34640.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482428 jgi|Araly1|482428|fgenesh2_kg.4__1488__AT2G34640.1 2713 0.0
> Ahg482428 jgi|Araly1|482428|fgenesh2_kg.4__1488__AT2G34640.1
Length=1807
Score = 2713 bits (1469), Expect = 0.0
Identities = 1672/1769 (95%), Gaps = 18/1769 (1%)
Strand=Plus/Plus
Query 32 AGGAGATAAATGGATAAACCCAAAAACTGACAAGTGAAAACCTTTTGAAGCC--AAAACC 89
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 1 AGGAGATAAATGGATAAACCCAAAAACTGACAAGTGAAAACCTTTCGAAGCCAAAAAAAC 60
Query 90 CCCTTCAAAATCAAGC-TCCATGATAGAAAACCCTCTTCCTACATAATCTCCTGGTAAAA 148
||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 61 TCCTTCAAAATCAA-CGTCCATGATAGAAAAACCTCTTCCAACATAATCTCCTGGTAAAA 119
Query 149 CAAAAAG---TGAGA-AGTAGAAAGAGTGTAAATGGCGTCAATATCAACCACCACCTGGC 204
||||||| ||| | ||| | |||||| |||||||||||||||||||||||| ||||
Sbjct 120 CAAAAAGAAATGATACAGT-G--GGAGTGT-AATGGCGTCAATATCAACCACCACTTGGC 175
Query 205 TCTACCGAGGTCAAGTATGCACAGACAGTGGAAAGTCCAGTAATTGTATTGTGCAGAGAC 264
||||||||||| ||||| ||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 176 TCTACCGAGGTAAAGTAGGCACAGAGATTGGAAAGTCCAGTAATTGTCTTGTGCAGAGAC 235
Query 265 GGGTTAAATGTGGGTTTCCACTCAAGACATTGCATGCT-GGGATTACTTCTAGGGATCGG 323
||||||||||||| |||||| |||||||||| |||| | |||||||||||| |||||| |
Sbjct 236 GGGTTAAATGTGGATTTCCAATCAAGACATTACATG-TCGGGATTACTTCTGGGGATCTG 294
Query 324 TCTTTGCGACATTGTATCAAATGCAAGAAAGAGGATGGAGATGGTGATGTAAGTGAAGGG 383
|| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 295 TCATTGCGACATTGTATCAAATGTAAGAAAGGGGATGGAGATGGTGATGCAAGTGAAGGC 354
Query 384 TCTAAGAAGAGTGAAGAAGGATTTGAGTATGTGACTGTTGAGAGGCATCCTTACCATAGT 443
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 355 ACTAAAAAGAGTGAAGAAGGATTTGATTATGTGACTGTTGAGAGGCCTCCTTACTATAGT 414
Query 444 TATATGGATTCAACTTCTGGGAAGCTTGAGCCAGCGTCCGGGGCTCGGGCTAGTATTCCA 503
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 415 TATATGGATTCAACTTCTGGGAAACTCGAGCCAGCGTCGGGGGCTCGGGCTAGTATTCCA 474
Query 504 GGTGAGGATTATTGGCCTGAAGGAACTTCGAGCCGGGTTAGAGCTGCTAGAGCTCCTCAA 563
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 475 GGTGAAGATTATTGGCCTGAAGGAACTTCGAGCCGGGTTAGAGCTGCTAGGGCTCCTCAA 534
Query 564 CCAGCTGGTGAGTCTTCGAGTTTTCCTTCCTATGGAAAGAATCCTGGAAGTAGGAGAAAG 623
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 535 CCAGCTGGTGAGTCTTCGAGTTTCCCTTCGTATGGAAAAAATCCTGGAAGTAGGAGAAAG 594
Query 624 AAGAATAGGAAAGCTACTGAGGAGAATGTGACTGTTGAAACGAATGACGAAGTATCCGAT 683
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 595 AAGAATCGGAAAGCAACTGAGGAGAATGTGACTGTTGAAACGAATGATGAAGTATCAGAT 654
Query 684 TCTGAGGATAGCTCTGAAGAAGAGGAAAATGATTCCTCGGATGGGTTTGTTACCTATAAG 743
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 655 TCTGAGGATAGCTCTGAAGAAGAGGAAAATGATTCCTCGGACGGGTTTGTTACCTATAAC 714
Query 744 AATGAATTTGAGAGAGAAGAAGAGGAGACTGGTTTTGAATTAGACAAAAAGCTTGGAAGG 803
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 715 AATGAATTTGAGAGAGAAGAAGAGGAGAGTGGTTTCGAATTAGACAAAAAGCTTGGGCGG 774
Query 804 CCACATCCTTTCATTGATCCTACGAAAAAGAAACAAATTGAAAAGACACTCACGAGCGAT 863
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 775 CCACATCCTTTCATCGATCCTACGAAAAAGAAACAAATCGAAAAGACACTCACGGGCGAT 834
Query 864 GAATCGTGGTGGAACTGGAGGAAACCGGAGAAAGAACAATGGTCAAGATGGCAAAGAAGA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAATCGTGGTGGAACTGGAGGAAACCGGAGAAAGAACAATGGTCAAGATGGCAAAGAAGA 894
Query 924 CGTCCTGATGTTGAAACGGTTTTCCTCAAGGCAATGGCAGAAACAGGACAAGTGAAGCTC 983
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 895 CGTCCTGATGTTGAAACGGTTTTTCTCAAGGCAATGGCAGAAACAGGACAAGTGAAGCTC 954
Query 984 TATGGGGAAGAACCAACACTCACAGAAACTTCTCTTTATAGAGCAAGAAGGCATCTTTTC 1043
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TATGGGAAAGAACCAACACTCACAGAAACTTCTCTTTATAGAGCAAGAAGGCATCTTTTC 1014
Query 1044 AAGGAAGAGAGGCTGCAAGCTGAGCGAGAGAGATTAGCGAAAGAAGGTCCAATGGCTTTT 1103
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 AAGGAAGAGAGGCTGCAAGCTGAGCGAGAGAGATTAGCTAAAGAAGGTCCAATGGCTTTT 1074
Query 1104 TATTCTGAATGGGTTAAAGCATGGAAGAGAGACACGTCAAGAGAAGCTGTACAAAAACAT 1163
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1075 TATTCTGAATGGGTTAAAGCATGGAAGAGAGATACGTCGCGAGAAGCTGTACAGAAACAT 1134
Query 1164 TTTGAAGAGACAGGTGAAGATGAAAACACACAACTGATTGAGATGTTCTCTCATCAAACA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTTGAAGAGACAGGTGAAGATGAAAACACACAACTGATTGAGATGTTCTCTCATCAAACA 1194
Query 1224 GATAGAGAATACCGGATAATGATGGGAACTGATATTAGGATCAAGAGAGATCCATTGGCA 1283
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1195 GATCGAGAATACCGGATAATGATGGGAACTGATATTAGGATCAAGAGAGATCCTTTGGCA 1254
Query 1284 ATGCGGATGAGGGAGGATCAAATTAAGCAAATTTGGGGCGGGGATCCAGTTTACCCGACA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATGCGGATGAGGGAGGATCAAATTAAGCAAATTTGGGGCGGGGATCCAGTTTACCCGACA 1314
Query 1344 ATTAACTACATTCAAGATCCTAATGCGGTTATGGATTTCAGAGGACCTGATTTTCATGAG 1403
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1315 ATTAACTACATTCAAGATCCTAATGCGGTTATGGATTTCAGAGGACCCGATTTTCATGAG 1374
Query 1404 CCTACACCAAATATGCTCTCTTATCTAAAGGAGAATGGCAAAGTCATCTCAAGAGAGATG 1463
|| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1375 CCGACACCAAATATGCTTTCTTATTTAAAAGAGAATGGCAAAGTCATCTCAAGAGAGATG 1434
Query 1464 CATGAAGCACTACTGACAAAAGAGAAAACCGAGCAGCTCGAGGTACCTGACATGGATGAT 1523
|||||||||||||| || ||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 1435 CATGAAGCACTACTAACTAAAGAAAAAACTGAGCAGCTCGAGGTGCCTGACATTGATGAT 1494
Query 1524 GCAATGGCACAAGCTGTTGATATTGGTGAAAACGATGACGACGAAGACGATGCAGATGTA 1583
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1495 GCAATGGCACAAGCTGTTGATATTGGTGAAAACGATGACGAGGAAGATGATGCAGATGTA 1554
Query 1584 GAAAAAGACGACGAGAAAGTGCCGAGGAACTGGAGTGTCTTGAAG-GAAACCCCTGAGCT 1642
|||||||||||||||||||||| |||||| ||||||||||||||| | | ||||||||||
Sbjct 1555 GAAAAAGACGACGAGAAAGTGCTGAGGAATTGGAGTGTCTTGAAGAGTA-CCCCTGAGCT 1613
Query 1643 TCGCACCGCCAAGCCTAAACCAAAGAAGGAAGGTCGGATGTCTCTAGACGAGGCCGTGGA 1702
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TCGCACCGCCAAGCCTACACCAAAGAAGGAAGGTCGGATGTCTCTAGACGAGGCCGTGGA 1673
Query 1703 TGATGCTGAGAACTTAACTGATTTTCTCATGGACTTTGAAGAGGAGACTGATCCTTAAAC 1762
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1674 TGATTCTGAGAACTTAACTGATTTTCTCATGGACTTTGAAGAGGAAACTGATCCTTAAAC 1733
Query 1763 CT-GGTTTTCGTATTTCTTATGTAAAGAC 1790
| |||||| |||||||| ||||||||||
Sbjct 1734 CCCGGTTTTTGTATTTCT-ATGTAAAGAC 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5